Wall clock time and date at job start Wed Apr 1 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38775 * 119.90116 * 2 1 4 4 N 1.31774 * 120.12065 * 179.97438 * 3 2 1 5 5 C 1.33038 * 119.92962 * 0.03409 * 4 3 2 6 6 C 1.48142 * 120.09571 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99787 * 172.83473 * 6 5 4 8 8 N 1.34780 * 120.00352 * 352.82874 * 6 5 4 9 9 C 1.46921 * 120.63489 * 169.85665 * 8 6 5 10 10 C 1.53188 * 108.77931 * 126.36766 * 9 8 6 11 11 C 1.53040 * 109.31187 * 54.63468 * 10 9 8 12 12 N 1.46498 * 109.45948 * 178.62579 * 11 10 9 13 13 C 1.36940 * 119.99713 * 60.02848 * 12 11 10 14 14 H 1.07993 * 119.99974 * 18.16451 * 13 12 11 15 15 C 1.38816 * 119.99770 * 198.16208 * 13 12 11 16 16 N 1.31617 * 119.99935 * 21.83399 * 15 13 12 17 17 Si 1.86799 * 119.99880 * 201.82517 * 15 13 12 18 18 H 1.48499 * 109.46890 * 94.99364 * 17 15 13 19 19 H 1.48503 * 109.47156 * 214.99216 * 17 15 13 20 20 H 1.48496 * 109.47155 * 334.99535 * 17 15 13 21 21 C 1.46504 * 120.00264 * 240.02630 * 12 11 10 22 22 C 1.53002 * 109.46736 * 84.18529 * 21 12 11 23 23 C 1.53002 * 117.49869 * 243.62070 * 22 21 12 24 24 C 1.52994 * 60.00010 * 252.51526 * 23 22 21 25 25 C 1.53036 * 109.53753 * 298.63719 * 11 10 9 26 26 C 1.46931 * 120.62484 * 349.82931 * 8 6 5 27 27 C 1.39396 * 119.80527 * 0.26583 * 5 4 3 28 28 N 1.32106 * 119.90587 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46748 * 90.00278 * 1 2 3 30 30 H 1.08998 * 109.46778 * 209.99250 * 1 2 3 31 31 H 1.08997 * 109.47346 * 329.99593 * 1 2 3 32 32 H 1.07997 * 119.93902 * 0.02771 * 3 2 1 33 33 H 1.09001 * 109.58393 * 6.57381 * 9 8 6 34 34 H 1.09002 * 109.70049 * 246.23227 * 9 8 6 35 35 H 1.08997 * 109.49495 * 294.68073 * 10 9 8 36 36 H 1.08998 * 109.49290 * 174.58389 * 10 9 8 37 37 H 1.09000 * 109.45895 * 58.65372 * 11 10 9 38 38 H 0.96999 * 120.00288 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.47059 * 204.18647 * 21 12 11 40 40 H 1.09002 * 109.46719 * 324.18679 * 21 12 11 41 41 H 1.08997 * 115.54716 * 29.33360 * 22 21 12 42 42 H 1.08999 * 117.49464 * 0.02562 * 23 22 21 43 43 H 1.08994 * 117.49571 * 145.02085 * 23 22 21 44 44 H 1.09001 * 117.50306 * 252.50830 * 24 23 22 45 45 H 1.09008 * 117.49977 * 107.48858 * 24 23 22 46 46 H 1.09003 * 109.49979 * 181.31907 * 25 11 10 47 47 H 1.09003 * 109.49920 * 301.40950 * 25 11 10 48 48 H 1.08994 * 109.58811 * 353.41719 * 26 8 6 49 49 H 1.09004 * 109.57970 * 113.84815 * 26 8 6 50 50 H 1.08004 * 120.06175 * 179.70730 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0577 0.0003 6 6 5.6661 0.0590 0.0015 7 8 6.2746 -0.9846 0.1326 8 7 6.3391 1.2178 -0.1430 9 6 7.7909 1.2727 0.0758 10 6 8.4533 1.8867 -1.1616 11 6 7.8107 3.2435 -1.4588 12 7 8.4640 3.8485 -2.6221 13 6 8.4468 3.2029 -3.8297 14 1 7.7274 2.4186 -4.0125 15 6 9.3542 3.5569 -4.8189 16 7 10.4734 4.1698 -4.4965 17 14 8.9867 3.1630 -6.6075 18 1 8.3600 4.3430 -7.2556 19 1 10.2509 2.8257 -7.3099 20 1 8.0572 2.0071 -6.6790 21 6 9.1357 5.1441 -2.4937 22 6 10.5567 4.9319 -1.9677 23 6 10.9004 5.5272 -0.6008 24 6 11.4660 6.1588 -1.8744 25 6 6.3214 3.0509 -1.7535 26 6 5.6348 2.4501 -0.5229 27 6 3.4868 -1.1490 -0.0060 28 7 2.1657 -1.1452 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6562 2.1368 0.0005 33 1 8.1750 0.2649 0.2337 34 1 8.0079 1.8873 0.9494 35 1 8.3144 1.2235 -2.0153 36 1 9.5186 2.0218 -0.9746 37 1 7.9283 3.8980 -0.5951 38 1 11.1072 4.4175 -5.1877 39 1 9.1778 5.6298 -3.4685 40 1 8.5809 5.7735 -1.7978 41 1 11.0194 3.9816 -2.2339 42 1 10.1140 6.0698 -0.0761 43 1 11.5893 4.9685 0.0326 44 1 12.5271 6.0157 -2.0789 45 1 11.0518 7.1172 -2.1877 46 1 5.8693 4.0146 -1.9881 47 1 6.2026 2.3768 -2.6018 48 1 4.5964 2.2191 -0.7602 49 1 5.6740 3.1622 0.3014 50 1 4.0251 -2.0853 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716714668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:45 Heat of formation + Delta-G solvation = 84.800380 kcal Electronic energy + Delta-G solvation = -30853.371937 eV Core-core repulsion = 26883.232518 eV Total energy + Delta-G solvation = -3970.139419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.65889 -39.65039 -37.67479 -36.43356 -35.17221 -34.37313 -33.15468 -32.04693 -30.69555 -29.87138 -28.66368 -26.13289 -25.11899 -24.99590 -23.65855 -22.69559 -22.03878 -21.46842 -20.54469 -19.43468 -19.12548 -18.22776 -17.16499 -16.49218 -16.22217 -15.86478 -15.77338 -15.21950 -15.03693 -14.71368 -14.37382 -13.82341 -13.72651 -13.57064 -13.49870 -13.31564 -13.09691 -13.05251 -12.85029 -12.75012 -12.51802 -12.02893 -11.58773 -11.55880 -11.30980 -11.17787 -10.86110 -10.72176 -10.65430 -10.62021 -10.55571 -10.29661 -10.23692 -9.96614 -9.89402 -9.64996 -9.53604 -9.13739 -9.01447 -8.69998 -8.37138 -8.33475 -6.77575 -5.72662 -3.10713 0.11987 0.71111 2.60821 2.96637 3.39523 3.48146 3.48402 3.49867 3.67514 3.76020 4.07008 4.41582 4.50899 4.64632 4.74750 4.94673 5.10355 5.14297 5.20055 5.25075 5.36377 5.40848 5.51538 5.58701 5.64158 5.77049 5.83823 5.86148 5.95855 6.01137 6.07057 6.13159 6.28286 6.35376 6.38375 6.45566 6.53284 6.58974 6.66265 6.71268 6.80264 6.84121 6.92494 7.07964 7.13401 7.30793 7.31390 7.50401 7.55409 7.78308 7.89336 8.13392 8.40032 9.25536 9.89418 10.36930 11.31219 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.002958 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.787532 B = 9462.374466 C =10284.863406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.097 3.903 3 C 0.044 3.956 4 N -0.395 5.395 5 C 0.028 3.972 6 C 0.571 3.429 7 O -0.538 6.538 8 N -0.579 5.579 9 C 0.110 3.890 10 C -0.135 4.135 11 C 0.180 3.820 12 N -0.588 5.588 13 C -0.250 4.250 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.291 1.291 19 H -0.294 1.294 20 H -0.282 1.282 21 C 0.207 3.793 22 C -0.080 4.080 23 C -0.225 4.225 24 C -0.185 4.185 25 C -0.142 4.142 26 C 0.081 3.919 27 C 0.115 3.885 28 N -0.442 5.442 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.251 0.749 39 H 0.075 0.925 40 H 0.009 0.991 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.130 0.870 49 H 0.061 0.939 50 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.825 -2.660 11.126 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.045 4.045 3 C -0.118 4.118 4 N -0.112 5.112 5 C -0.112 4.112 6 C 0.356 3.644 7 O -0.416 6.416 8 N -0.310 5.310 9 C -0.013 4.013 10 C -0.175 4.175 11 C 0.072 3.928 12 N -0.307 5.307 13 C -0.379 4.379 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.218 1.218 19 H -0.221 1.221 20 H -0.208 1.208 21 C 0.082 3.918 22 C -0.101 4.101 23 C -0.262 4.262 24 C -0.223 4.223 25 C -0.182 4.182 26 C -0.041 4.041 27 C -0.045 4.045 28 N -0.157 5.157 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.028 0.972 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.147 0.853 49 H 0.080 0.920 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.303 -3.157 11.072 19.150 hybrid contribution 0.233 0.034 -1.102 1.127 sum -15.070 -3.123 9.970 18.337 Atomic orbital electron populations 1.20761 0.87305 1.04249 1.03877 1.22652 0.98805 0.89755 0.93242 1.23898 0.90725 0.99574 0.97582 1.68589 1.08332 1.27407 1.06908 1.22303 0.96161 0.90913 1.01796 1.17625 0.84808 0.84099 0.77892 1.90777 1.68253 1.31078 1.51448 1.48012 1.08874 1.08859 1.65256 1.21840 0.78320 1.02318 0.98792 1.22352 0.99931 0.99036 0.96194 1.20234 0.90412 0.92132 0.90004 1.44147 1.62361 1.18655 1.05529 1.19083 1.12206 1.17403 0.89191 0.91335 1.24795 0.95182 1.01273 0.98271 1.70175 1.07385 1.44921 1.30986 0.86431 0.77160 0.77767 0.86401 1.21783 1.22076 1.20774 1.20197 0.87615 0.85642 0.98385 1.23078 0.98061 0.97047 0.91865 1.23098 1.03900 1.06883 0.92323 1.22603 0.99061 0.98849 1.01797 1.22418 0.98185 1.00753 0.96875 1.22890 0.99316 0.84639 0.97296 1.23806 0.89814 0.99339 0.91493 1.68476 1.08309 1.29028 1.09936 0.89485 0.89907 0.89832 0.80588 0.89657 0.91698 0.91293 0.90971 0.92994 0.93891 0.90680 0.97242 0.86819 0.90680 0.90904 0.90682 0.90615 0.91290 0.91754 0.85335 0.92042 0.79995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 36.01 0.37 -0.14 16 2 C 0.10 0.84 6.79 -82.28 -0.56 0.28 16 3 C 0.04 0.38 10.88 -17.38 -0.19 0.19 16 4 N -0.40 -4.60 6.32 -9.62 -0.06 -4.66 16 5 C 0.03 0.37 6.58 -82.85 -0.55 -0.17 16 6 C 0.57 9.01 7.64 -12.19 -0.09 8.92 16 7 O -0.54 -9.67 15.82 5.35 0.08 -9.59 16 8 N -0.58 -8.98 2.97 -173.77 -0.52 -9.50 16 9 C 0.11 1.73 6.44 -3.72 -0.02 1.70 16 10 C -0.14 -2.50 5.31 -26.61 -0.14 -2.64 16 11 C 0.18 3.41 2.59 -67.89 -0.18 3.24 16 12 N -0.59 -13.34 2.47 -165.62 -0.41 -13.74 16 13 C -0.25 -6.35 8.40 -15.06 -0.13 -6.48 16 14 H 0.07 1.78 6.92 -52.49 -0.36 1.42 16 15 C 0.00 0.09 4.85 -17.43 -0.08 0.00 16 16 N -0.89 -23.88 9.05 55.49 0.50 -23.38 16 17 Si 0.89 21.32 29.61 -169.99 -5.03 16.29 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.21 4.65 5.09 -4.04 -0.02 4.63 16 22 C -0.08 -1.72 4.43 -90.62 -0.40 -2.12 16 23 C -0.22 -4.09 10.18 -26.73 -0.27 -4.36 16 24 C -0.19 -3.57 10.25 -26.74 -0.27 -3.85 16 25 C -0.14 -2.42 5.30 -26.61 -0.14 -2.56 16 26 C 0.08 1.16 5.85 -3.71 -0.02 1.14 16 27 C 0.12 1.39 10.77 -17.00 -0.18 1.20 16 28 N -0.44 -4.90 10.41 -8.94 -0.09 -4.99 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.09 1.39 7.01 -51.93 -0.36 1.02 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 38 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.08 1.90 6.50 -51.93 -0.34 1.56 16 40 H 0.01 0.20 7.78 -51.93 -0.40 -0.21 16 41 H 0.11 2.86 7.31 -51.93 -0.38 2.48 16 42 H 0.07 1.28 8.03 -51.93 -0.42 0.87 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.06 1.24 7.06 -51.93 -0.37 0.87 16 48 H 0.13 1.74 4.12 -79.35 -0.33 1.41 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.18 2.03 7.67 -52.48 -0.40 1.63 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -29.36 395.23 -10.41 -39.77 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.95 Total: 4.87 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.89 Total: -1.03 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.58 Total: -56.27 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.36 -10.41 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716714668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.570 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds