Wall clock time and date at job start Wed Apr 1 2020 04:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38775 * 119.90116 * 2 1 4 4 N 1.31774 * 120.12065 * 179.97438 * 3 2 1 5 5 C 1.33038 * 119.92962 * 0.03409 * 4 3 2 6 6 C 1.48142 * 120.09571 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99787 * 172.83473 * 6 5 4 8 8 N 1.34780 * 120.00352 * 352.82874 * 6 5 4 9 9 C 1.46921 * 120.63489 * 169.85665 * 8 6 5 10 10 C 1.53188 * 108.77931 * 126.36766 * 9 8 6 11 11 C 1.53040 * 109.31187 * 54.63468 * 10 9 8 12 12 N 1.46498 * 109.45948 * 178.62579 * 11 10 9 13 13 C 1.36940 * 119.99713 * 60.02848 * 12 11 10 14 14 H 1.07993 * 119.99974 * 18.16451 * 13 12 11 15 15 C 1.38816 * 119.99770 * 198.16208 * 13 12 11 16 16 N 1.31617 * 119.99935 * 21.83399 * 15 13 12 17 17 Si 1.86799 * 119.99880 * 201.82517 * 15 13 12 18 18 H 1.48499 * 109.46890 * 94.99364 * 17 15 13 19 19 H 1.48503 * 109.47156 * 214.99216 * 17 15 13 20 20 H 1.48496 * 109.47155 * 334.99535 * 17 15 13 21 21 C 1.46504 * 120.00264 * 240.02630 * 12 11 10 22 22 C 1.53002 * 109.46736 * 84.18529 * 21 12 11 23 23 C 1.53002 * 117.49869 * 243.62070 * 22 21 12 24 24 C 1.52994 * 60.00010 * 252.51526 * 23 22 21 25 25 C 1.53036 * 109.53753 * 298.63719 * 11 10 9 26 26 C 1.46931 * 120.62484 * 349.82931 * 8 6 5 27 27 C 1.39396 * 119.80527 * 0.26583 * 5 4 3 28 28 N 1.32106 * 119.90587 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46748 * 90.00278 * 1 2 3 30 30 H 1.08998 * 109.46778 * 209.99250 * 1 2 3 31 31 H 1.08997 * 109.47346 * 329.99593 * 1 2 3 32 32 H 1.07997 * 119.93902 * 0.02771 * 3 2 1 33 33 H 1.09001 * 109.58393 * 6.57381 * 9 8 6 34 34 H 1.09002 * 109.70049 * 246.23227 * 9 8 6 35 35 H 1.08997 * 109.49495 * 294.68073 * 10 9 8 36 36 H 1.08998 * 109.49290 * 174.58389 * 10 9 8 37 37 H 1.09000 * 109.45895 * 58.65372 * 11 10 9 38 38 H 0.96999 * 120.00288 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.47059 * 204.18647 * 21 12 11 40 40 H 1.09002 * 109.46719 * 324.18679 * 21 12 11 41 41 H 1.08997 * 115.54716 * 29.33360 * 22 21 12 42 42 H 1.08999 * 117.49464 * 0.02562 * 23 22 21 43 43 H 1.08994 * 117.49571 * 145.02085 * 23 22 21 44 44 H 1.09001 * 117.50306 * 252.50830 * 24 23 22 45 45 H 1.09008 * 117.49977 * 107.48858 * 24 23 22 46 46 H 1.09003 * 109.49979 * 181.31907 * 25 11 10 47 47 H 1.09003 * 109.49920 * 301.40950 * 25 11 10 48 48 H 1.08994 * 109.58811 * 353.41719 * 26 8 6 49 49 H 1.09004 * 109.57970 * 113.84815 * 26 8 6 50 50 H 1.08004 * 120.06175 * 179.70730 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0577 0.0003 6 6 5.6661 0.0590 0.0015 7 8 6.2746 -0.9846 0.1326 8 7 6.3391 1.2178 -0.1430 9 6 7.7909 1.2727 0.0758 10 6 8.4533 1.8867 -1.1616 11 6 7.8107 3.2435 -1.4588 12 7 8.4640 3.8485 -2.6221 13 6 8.4468 3.2029 -3.8297 14 1 7.7274 2.4186 -4.0125 15 6 9.3542 3.5569 -4.8189 16 7 10.4734 4.1698 -4.4965 17 14 8.9867 3.1630 -6.6075 18 1 8.3600 4.3430 -7.2556 19 1 10.2509 2.8257 -7.3099 20 1 8.0572 2.0071 -6.6790 21 6 9.1357 5.1441 -2.4937 22 6 10.5567 4.9319 -1.9677 23 6 10.9004 5.5272 -0.6008 24 6 11.4660 6.1588 -1.8744 25 6 6.3214 3.0509 -1.7535 26 6 5.6348 2.4501 -0.5229 27 6 3.4868 -1.1490 -0.0060 28 7 2.1657 -1.1452 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6562 2.1368 0.0005 33 1 8.1750 0.2649 0.2337 34 1 8.0079 1.8873 0.9494 35 1 8.3144 1.2235 -2.0153 36 1 9.5186 2.0218 -0.9746 37 1 7.9283 3.8980 -0.5951 38 1 11.1072 4.4175 -5.1877 39 1 9.1778 5.6298 -3.4685 40 1 8.5809 5.7735 -1.7978 41 1 11.0194 3.9816 -2.2339 42 1 10.1140 6.0698 -0.0761 43 1 11.5893 4.9685 0.0326 44 1 12.5271 6.0157 -2.0789 45 1 11.0518 7.1172 -2.1877 46 1 5.8693 4.0146 -1.9881 47 1 6.2026 2.3768 -2.6018 48 1 4.5964 2.2191 -0.7602 49 1 5.6740 3.1622 0.3014 50 1 4.0251 -2.0853 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716714668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:44 Heat of formation + Delta-G solvation = 69.033016 kcal Electronic energy + Delta-G solvation = -30854.055662 eV Core-core repulsion = 26883.232518 eV Total energy + Delta-G solvation = -3970.823143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.52864 -40.84267 -39.19653 -37.92931 -36.29890 -35.70685 -33.90211 -33.72707 -32.02506 -31.50129 -29.45693 -27.92472 -26.53796 -25.80636 -24.75506 -24.00066 -23.42918 -22.97699 -21.87629 -21.11489 -20.54896 -19.18658 -18.41963 -17.87063 -17.49245 -16.95081 -16.84891 -16.74537 -16.16897 -15.92378 -15.70965 -15.48151 -15.20211 -15.12583 -14.82351 -14.47217 -14.36767 -13.86051 -13.71101 -13.68113 -13.49643 -13.22112 -13.16663 -13.13731 -12.71405 -12.61611 -12.36660 -12.31491 -12.30734 -12.18293 -12.01574 -11.91117 -11.75257 -11.50417 -11.36853 -11.21233 -10.80269 -10.50827 -10.32651 -10.14140 -9.92433 -9.63662 -8.63761 -7.72868 -5.10252 -0.72923 -0.07409 1.44283 1.48446 1.53589 1.55024 1.83597 2.55357 2.61083 2.81792 3.01322 3.30240 3.34148 3.37034 3.54112 3.61545 3.90701 4.00364 4.08280 4.19954 4.27030 4.33029 4.41094 4.45435 4.47303 4.48296 4.60355 4.71096 4.80160 4.81781 4.85852 4.85970 4.89918 4.94155 4.97404 5.09105 5.14694 5.15920 5.24838 5.37483 5.43421 5.45388 5.52109 5.57949 5.68745 5.74396 5.81090 6.01176 6.05089 6.29706 6.43529 6.57243 6.93837 7.28346 8.01912 8.42807 9.27437 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.002958 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.787532 B = 9462.374466 C =10284.863406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 C 0.055 3.945 4 N -0.407 5.407 5 C 0.003 3.997 6 C 0.567 3.433 7 O -0.571 6.571 8 N -0.585 5.585 9 C 0.119 3.881 10 C -0.122 4.122 11 C 0.178 3.822 12 N -0.598 5.598 13 C -0.244 4.244 14 H 0.057 0.943 15 C -0.042 4.042 16 N -0.904 5.904 17 Si 0.940 3.060 18 H -0.290 1.290 19 H -0.302 1.302 20 H -0.283 1.283 21 C 0.214 3.786 22 C -0.101 4.101 23 C -0.192 4.192 24 C -0.183 4.183 25 C -0.131 4.131 26 C 0.091 3.909 27 C 0.109 3.891 28 N -0.461 5.461 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.221 0.779 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.242 0.758 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.144 0.856 49 H 0.083 0.917 50 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.823 -1.119 13.064 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.036 4.036 3 C -0.109 4.109 4 N -0.124 5.124 5 C -0.134 4.134 6 C 0.354 3.646 7 O -0.451 6.451 8 N -0.315 5.315 9 C -0.004 4.004 10 C -0.162 4.162 11 C 0.071 3.929 12 N -0.318 5.318 13 C -0.374 4.374 14 H 0.075 0.925 15 C -0.239 4.239 16 N -0.550 5.550 17 Si 0.771 3.229 18 H -0.218 1.218 19 H -0.229 1.229 20 H -0.208 1.208 21 C 0.089 3.911 22 C -0.122 4.122 23 C -0.229 4.229 24 C -0.221 4.221 25 C -0.171 4.171 26 C -0.031 4.031 27 C -0.049 4.049 28 N -0.176 5.176 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.238 0.762 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.052 0.948 48 H 0.160 0.840 49 H 0.102 0.898 50 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.296 -1.632 13.026 22.518 hybrid contribution 0.994 -0.455 -1.674 1.999 sum -17.302 -2.087 11.352 20.799 Atomic orbital electron populations 1.20951 0.84177 1.05810 1.05089 1.23418 1.00707 0.89084 0.90386 1.24636 0.89587 1.01325 0.95371 1.68384 1.09928 1.26639 1.07492 1.21827 0.94615 0.92010 1.04948 1.18038 0.86129 0.83496 0.76924 1.90745 1.69372 1.32099 1.52894 1.48093 1.08618 1.09400 1.65363 1.21693 0.78721 1.02014 0.97991 1.22151 0.99438 0.98426 0.96223 1.20433 0.91156 0.92094 0.89237 1.44300 1.62659 1.18928 1.05905 1.19119 1.11131 1.16617 0.90531 0.92535 1.25295 0.95520 1.02408 1.00632 1.70329 1.07707 1.46161 1.30819 0.85665 0.76341 0.77328 0.83544 1.21759 1.22919 1.20818 1.20061 0.88517 0.85484 0.97084 1.22628 0.97779 0.96225 0.95550 1.23120 1.03731 1.05034 0.91033 1.22645 0.98692 0.98131 1.02617 1.22277 0.96985 1.00578 0.97297 1.22944 0.99405 0.84264 0.96460 1.23744 0.90454 0.98965 0.91757 1.68552 1.07654 1.30525 1.10880 0.88127 0.90022 0.86645 0.76224 0.90557 0.89090 0.94964 0.92438 0.91229 0.94824 0.94181 0.95030 0.91062 0.88553 0.89701 0.90721 0.89780 0.90597 0.94781 0.83997 0.89846 0.80462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.19 71.24 0.73 0.17 16 2 C 0.11 1.50 6.79 42.65 0.29 1.79 16 3 C 0.05 0.73 10.88 84.83 0.92 1.65 16 4 N -0.41 -8.50 6.32 -184.34 -1.17 -9.66 16 5 C 0.00 0.09 6.58 41.87 0.28 0.37 16 6 C 0.57 18.09 7.64 86.87 0.66 18.76 16 7 O -0.57 -21.33 15.82 -3.77 -0.06 -21.39 16 8 N -0.58 -17.84 2.97 -821.98 -2.44 -20.28 16 9 C 0.12 3.72 6.44 86.36 0.56 4.28 16 10 C -0.12 -4.65 5.31 30.67 0.16 -4.49 16 11 C 0.18 6.66 2.59 45.02 0.12 6.78 16 12 N -0.60 -27.57 2.47 -677.89 -1.67 -29.24 16 13 C -0.24 -12.81 8.40 84.03 0.71 -12.10 16 14 H 0.06 3.07 6.92 -2.91 -0.02 3.05 16 15 C -0.04 -2.29 4.85 84.86 0.41 -1.88 16 16 N -0.90 -50.30 9.05 21.65 0.20 -50.10 16 17 Si 0.94 45.24 29.61 68.60 2.03 47.27 16 18 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 19 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 20 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 21 C 0.21 9.61 5.09 86.38 0.44 10.05 16 22 C -0.10 -4.36 4.43 -10.79 -0.05 -4.40 16 23 C -0.19 -6.53 10.18 30.59 0.31 -6.22 16 24 C -0.18 -6.87 10.25 30.59 0.31 -6.56 16 25 C -0.13 -4.38 5.30 30.67 0.16 -4.21 16 26 C 0.09 2.43 5.85 86.36 0.51 2.94 16 27 C 0.11 2.61 10.77 84.93 0.91 3.53 16 28 N -0.46 -9.53 10.41 -182.21 -1.90 -11.43 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.12 -0.05 8.08 -2.39 -0.02 -0.07 16 32 H 0.22 0.88 8.06 -2.91 -0.02 0.85 16 33 H 0.08 2.55 7.01 -2.39 -0.02 2.53 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.03 1.43 7.71 -2.39 -0.02 1.41 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.38 7.87 -2.39 -0.02 2.36 16 38 H 0.24 13.46 8.31 -92.71 -0.77 12.69 16 39 H 0.04 2.06 6.50 -2.39 -0.02 2.05 16 40 H 0.03 1.26 7.78 -2.39 -0.02 1.24 16 41 H 0.07 3.72 7.31 -2.39 -0.02 3.70 16 42 H 0.10 2.91 8.03 -2.39 -0.02 2.89 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 46 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.03 1.33 7.06 -2.39 -0.02 1.31 16 48 H 0.14 3.51 4.12 -56.53 -0.23 3.28 16 49 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.18 4.19 7.67 -2.91 -0.02 4.17 16 Total: -1.00 -67.78 395.23 3.14 -64.64 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.72 Total: 19.75 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 7.43 Total: 10.44 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -6.98 Total: -120.72 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.78 3.14 -64.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716714668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.678 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds