Wall clock time and date at job start Wed Apr 1 2020 03:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47174 * 79.57946 * 3 2 1 5 5 C 1.34781 * 120.00149 * 269.99758 * 4 3 2 6 6 O 1.21606 * 119.99799 * 179.97438 * 5 4 3 7 7 C 1.47431 * 119.99762 * 0.02562 * 5 4 3 8 8 C 1.41290 * 126.41109 * 270.02330 * 7 5 4 9 9 C 1.50700 * 125.99281 * 359.97438 * 8 7 5 10 10 N 1.30448 * 108.01952 * 179.97438 * 8 7 5 11 11 N 1.39931 * 108.90005 * 359.97438 * 10 8 7 12 12 C 1.46498 * 125.75608 * 180.02562 * 11 10 8 13 13 C 1.34263 * 108.48926 * 359.75626 * 11 10 8 14 14 C 1.50707 * 126.28989 * 180.24428 * 13 11 10 15 15 C 1.46506 * 120.00021 * 90.00183 * 4 3 2 16 16 C 1.53040 * 109.46340 * 60.02529 * 15 4 3 17 17 C 1.53186 * 109.31188 * 178.60490 * 16 15 4 18 18 N 1.46925 * 108.76951 * 54.65429 * 17 16 15 19 19 C 1.36938 * 120.63150 * 126.40441 * 18 17 16 20 20 H 1.08004 * 119.99583 * 331.83198 * 19 18 17 21 21 C 1.38807 * 119.99757 * 151.83010 * 19 18 17 22 22 N 1.31620 * 120.00231 * 343.06664 * 21 19 18 23 23 Si 1.86804 * 119.99627 * 163.06983 * 21 19 18 24 24 H 1.48500 * 109.47435 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46899 * 120.00017 * 23 21 19 26 26 H 1.48501 * 109.47285 * 239.99531 * 23 21 19 27 27 C 1.46924 * 118.73609 * 306.38385 * 18 17 16 28 28 C 1.53046 * 109.45605 * 299.97017 * 15 4 3 29 29 H 4.40641 * 5.51353 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.47432 * 319.57874 * 3 2 1 31 31 H 1.09006 * 109.47276 * 199.57898 * 3 2 1 32 32 H 1.09003 * 109.47020 * 90.00248 * 9 8 7 33 33 H 1.08989 * 109.47282 * 210.00297 * 9 8 7 34 34 H 1.09000 * 109.47053 * 330.00644 * 9 8 7 35 35 H 1.08994 * 109.47225 * 89.97884 * 12 11 10 36 36 H 1.09004 * 109.47067 * 209.97742 * 12 11 10 37 37 H 1.09002 * 109.46878 * 329.97404 * 12 11 10 38 38 H 1.09001 * 109.46527 * 270.17065 * 14 13 11 39 39 H 1.08995 * 109.47264 * 30.17178 * 14 13 11 40 40 H 1.09007 * 109.46818 * 150.17807 * 14 13 11 41 41 H 1.08998 * 109.46054 * 180.02562 * 15 4 3 42 42 H 1.08998 * 109.49424 * 298.57133 * 16 15 4 43 43 H 1.09002 * 109.49524 * 58.65853 * 16 15 4 44 44 H 1.09001 * 109.59747 * 294.86241 * 17 16 15 45 45 H 1.09000 * 109.70182 * 174.51145 * 17 16 15 46 46 H 0.97004 * 119.99730 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.58730 * 293.81798 * 27 18 17 48 48 H 1.09005 * 109.69902 * 173.46268 * 27 18 17 49 49 H 1.09002 * 109.49632 * 301.33717 * 28 15 4 50 50 H 1.09000 * 109.49543 * 61.43760 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2489 -1.3584 5 6 3.3597 -1.5117 -1.7722 6 8 3.7647 -1.7189 -2.8999 7 6 3.1140 -2.6419 -0.8579 8 6 4.0460 -3.2156 0.0358 9 6 5.4760 -2.7793 0.2248 10 7 3.4516 -4.1891 0.6687 11 7 2.1304 -4.2832 0.2174 12 6 1.1337 -5.2509 0.6826 13 6 1.9284 -3.3332 -0.7096 14 6 0.6445 -3.0722 -1.4544 15 6 3.3782 0.8741 -2.2671 16 6 4.4331 1.8017 -1.6599 17 6 4.7107 2.9558 -2.6282 18 7 3.4395 3.6179 -2.9514 19 6 3.2946 4.9694 -2.7848 20 1 3.8755 5.4863 -2.0352 21 6 2.4013 5.6747 -3.5793 22 7 1.9460 5.1396 -4.6923 23 14 1.8453 7.3835 -3.0687 24 1 2.4982 7.7544 -1.7876 25 1 2.2255 8.3621 -4.1190 26 1 0.3706 7.3927 -2.8942 27 6 2.3268 2.8024 -3.4570 28 6 2.0761 1.6499 -2.4795 29 1 -1.0499 0.0002 -0.0001 30 1 3.0098 -0.7815 0.6663 31 1 3.0090 0.9691 0.3444 32 1 5.5235 -2.0168 1.0024 33 1 6.0815 -3.6364 0.5190 34 1 5.8572 -2.3688 -0.7102 35 1 0.5900 -4.8336 1.5300 36 1 0.4352 -5.4698 -0.1251 37 1 1.6345 -6.1694 0.9887 38 1 0.6272 -3.6668 -2.3678 39 1 -0.2024 -3.3470 -0.8259 40 1 0.5805 -2.0141 -1.7085 41 1 3.7351 0.4954 -3.2248 42 1 4.0660 2.2003 -0.7142 43 1 5.3528 1.2428 -1.4870 44 1 5.1623 2.5667 -3.5408 45 1 5.3876 3.6718 -2.1622 46 1 1.3221 5.6328 -5.2477 47 1 2.5840 2.4009 -4.4372 48 1 1.4289 3.4153 -3.5373 49 1 1.3181 0.9829 -2.8901 50 1 1.7314 2.0500 -1.5259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754639580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:39 Heat of formation + Delta-G solvation = 122.068141 kcal Electronic energy + Delta-G solvation = -31497.059725 eV Core-core repulsion = 27528.536357 eV Total energy + Delta-G solvation = -3968.523368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.66698 -39.63157 -37.30716 -35.53397 -34.47875 -33.16781 -32.21745 -31.94617 -30.22325 -29.78137 -29.55951 -27.62633 -27.06445 -25.97384 -24.91088 -22.66909 -22.16053 -21.09645 -19.70701 -19.46851 -19.09885 -17.92028 -17.22228 -16.74970 -16.52867 -15.80970 -15.70254 -15.06553 -14.77290 -14.17520 -14.03993 -13.78706 -13.76627 -13.61850 -13.49118 -13.38204 -13.19488 -13.12290 -12.92109 -12.82444 -12.63284 -12.49479 -12.34150 -12.18022 -12.07664 -11.46203 -11.22218 -10.99987 -10.83712 -10.72547 -10.49407 -10.35833 -10.12263 -10.10668 -10.00511 -9.77048 -9.67542 -9.45877 -9.32911 -8.59487 -8.55634 -8.36035 -6.66281 -5.77441 -3.19931 1.54460 2.15112 2.31512 2.60036 2.76381 2.90762 3.37458 3.45589 3.47574 3.54340 4.19010 4.32200 4.44437 4.50593 4.63494 4.77644 4.84839 4.92286 5.03068 5.12924 5.23084 5.24845 5.35647 5.41815 5.46456 5.49316 5.54391 5.60594 5.60850 5.68640 5.73060 5.85091 5.89763 5.97464 6.12032 6.26999 6.35418 6.38420 6.52305 6.63092 6.66342 6.69945 6.80420 6.94105 6.98689 7.37917 7.47974 7.55857 7.66056 7.69595 7.81319 8.36674 8.46492 9.22557 9.85990 10.42912 11.31178 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.002977 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.842365 B = 9404.643100 C = 9963.406749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.190 4.190 3 C 0.220 3.780 4 N -0.593 5.593 5 C 0.599 3.401 6 O -0.533 6.533 7 C -0.279 4.279 8 C 0.112 3.888 9 C -0.078 4.078 10 N -0.299 5.299 11 N -0.365 5.365 12 C 0.099 3.901 13 C 0.132 3.868 14 C -0.099 4.099 15 C 0.144 3.856 16 C -0.139 4.139 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.175 3.825 28 C -0.141 4.141 29 H 0.214 0.786 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.253 0.747 47 H 0.019 0.981 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 -19.256 12.683 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.097 3.903 4 N -0.324 5.324 5 C 0.386 3.614 6 O -0.409 6.409 7 C -0.293 4.293 8 C -0.055 4.055 9 C -0.136 4.136 10 N -0.121 5.121 11 N -0.145 5.145 12 C -0.042 4.042 13 C 0.002 3.998 14 C -0.157 4.157 15 C 0.043 3.957 16 C -0.179 4.179 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.181 4.181 29 H 0.231 0.769 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.107 0.893 49 H 0.067 0.933 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.294 -20.308 12.870 24.152 hybrid contribution -0.927 1.393 -0.271 1.695 sum -3.221 -18.914 12.599 22.953 Atomic orbital electron populations 1.24803 0.95771 1.01615 0.99366 1.23516 0.94844 0.99848 1.00894 1.18310 0.83867 1.03464 0.84665 1.48233 1.64305 1.06242 1.13645 1.17384 0.76561 0.81697 0.85777 1.90777 1.45547 1.84570 1.19964 1.19846 0.94672 1.05798 1.09018 1.22289 0.96796 0.93171 0.93270 1.20271 0.87934 1.01905 1.03528 1.77078 0.89392 1.21941 1.23693 1.48081 1.09617 1.26196 1.30581 1.21892 0.89578 0.91736 1.00968 1.21267 0.96464 0.90104 0.91985 1.20608 0.91022 1.04762 0.99349 1.21269 0.96717 0.84555 0.93169 1.22392 0.97364 0.97666 1.00477 1.20856 0.89509 0.92513 0.95010 1.44090 1.06904 1.03982 1.76498 1.19210 1.22554 0.83255 1.13040 0.91634 1.25049 1.01857 0.97727 0.95012 1.70044 1.34660 1.38021 1.11875 0.86252 0.78340 0.84372 0.77983 1.20268 1.21756 1.21626 1.20748 0.93306 0.89385 0.91744 1.22539 0.95128 0.98566 1.01888 0.76916 0.88755 0.87696 0.90025 0.90427 0.90035 0.90494 0.89387 0.89008 0.89639 0.90646 0.89024 0.88446 0.92088 0.92637 0.96166 0.92429 0.93696 0.96253 0.89278 0.93345 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.28 18.59 29.55 0.55 -1.73 16 2 C -0.19 -2.47 11.43 -37.12 -0.42 -2.89 16 3 C 0.22 2.82 5.17 -6.83 -0.04 2.79 16 4 N -0.59 -8.99 2.37 -170.63 -0.40 -9.40 16 5 C 0.60 9.71 6.83 -12.52 -0.09 9.63 16 6 O -0.53 -10.61 16.43 5.27 0.09 -10.53 16 7 C -0.28 -3.90 4.11 -105.07 -0.43 -4.33 16 8 C 0.11 1.45 6.96 -82.02 -0.57 0.88 16 9 C -0.08 -0.80 10.28 36.01 0.37 -0.43 16 10 N -0.30 -3.86 12.50 33.90 0.42 -3.43 16 11 N -0.36 -3.99 3.98 -63.34 -0.25 -4.24 16 12 C 0.10 0.60 11.06 59.85 0.66 1.27 16 13 C 0.13 1.58 7.01 -81.60 -0.57 1.01 16 14 C -0.10 -0.95 9.70 36.01 0.35 -0.60 16 15 C 0.14 2.55 2.48 -67.88 -0.17 2.39 16 16 C -0.14 -2.37 5.31 -26.61 -0.14 -2.51 16 17 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 18 N -0.59 -14.64 2.99 -172.32 -0.52 -15.16 16 19 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 20 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 21 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 23 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 28 C -0.14 -2.73 4.73 -26.61 -0.13 -2.86 16 29 H 0.21 1.77 7.80 -54.09 -0.42 1.35 16 30 H 0.09 1.10 6.64 -51.93 -0.34 0.76 16 31 H 0.11 1.31 6.46 -51.93 -0.34 0.97 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.69 8.14 -51.94 -0.42 0.27 16 34 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.35 7.64 -51.93 -0.40 -0.04 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.51 7.71 -51.93 -0.40 0.11 16 40 H 0.09 1.05 6.57 -51.92 -0.34 0.70 16 41 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 42 H 0.06 1.01 6.72 -51.93 -0.35 0.67 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 49 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 1.15 7.02 -51.93 -0.36 0.78 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -34.22 405.28 -7.67 -41.89 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.81 Total: 0.90 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.90 Total: 2.83 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.13 Total: -57.70 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.22 -7.67 -41.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754639580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.957 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds