Wall clock time and date at job start Wed Apr 1 2020 03:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47174 * 79.57946 * 3 2 1 5 5 C 1.34781 * 120.00149 * 269.99758 * 4 3 2 6 6 O 1.21606 * 119.99799 * 179.97438 * 5 4 3 7 7 C 1.47431 * 119.99762 * 0.02562 * 5 4 3 8 8 C 1.41290 * 126.41109 * 270.02330 * 7 5 4 9 9 C 1.50700 * 125.99281 * 359.97438 * 8 7 5 10 10 N 1.30448 * 108.01952 * 179.97438 * 8 7 5 11 11 N 1.39931 * 108.90005 * 359.97438 * 10 8 7 12 12 C 1.46498 * 125.75608 * 180.02562 * 11 10 8 13 13 C 1.34263 * 108.48926 * 359.75626 * 11 10 8 14 14 C 1.50707 * 126.28989 * 180.24428 * 13 11 10 15 15 C 1.46506 * 120.00021 * 90.00183 * 4 3 2 16 16 C 1.53040 * 109.46340 * 60.02529 * 15 4 3 17 17 C 1.53186 * 109.31188 * 178.60490 * 16 15 4 18 18 N 1.46925 * 108.76951 * 54.65429 * 17 16 15 19 19 C 1.36938 * 120.63150 * 126.40441 * 18 17 16 20 20 H 1.08004 * 119.99583 * 331.83198 * 19 18 17 21 21 C 1.38807 * 119.99757 * 151.83010 * 19 18 17 22 22 N 1.31620 * 120.00231 * 343.06664 * 21 19 18 23 23 Si 1.86804 * 119.99627 * 163.06983 * 21 19 18 24 24 H 1.48500 * 109.47435 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46899 * 120.00017 * 23 21 19 26 26 H 1.48501 * 109.47285 * 239.99531 * 23 21 19 27 27 C 1.46924 * 118.73609 * 306.38385 * 18 17 16 28 28 C 1.53046 * 109.45605 * 299.97017 * 15 4 3 29 29 H 4.40641 * 5.51353 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.47432 * 319.57874 * 3 2 1 31 31 H 1.09006 * 109.47276 * 199.57898 * 3 2 1 32 32 H 1.09003 * 109.47020 * 90.00248 * 9 8 7 33 33 H 1.08989 * 109.47282 * 210.00297 * 9 8 7 34 34 H 1.09000 * 109.47053 * 330.00644 * 9 8 7 35 35 H 1.08994 * 109.47225 * 89.97884 * 12 11 10 36 36 H 1.09004 * 109.47067 * 209.97742 * 12 11 10 37 37 H 1.09002 * 109.46878 * 329.97404 * 12 11 10 38 38 H 1.09001 * 109.46527 * 270.17065 * 14 13 11 39 39 H 1.08995 * 109.47264 * 30.17178 * 14 13 11 40 40 H 1.09007 * 109.46818 * 150.17807 * 14 13 11 41 41 H 1.08998 * 109.46054 * 180.02562 * 15 4 3 42 42 H 1.08998 * 109.49424 * 298.57133 * 16 15 4 43 43 H 1.09002 * 109.49524 * 58.65853 * 16 15 4 44 44 H 1.09001 * 109.59747 * 294.86241 * 17 16 15 45 45 H 1.09000 * 109.70182 * 174.51145 * 17 16 15 46 46 H 0.97004 * 119.99730 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.58730 * 293.81798 * 27 18 17 48 48 H 1.09005 * 109.69902 * 173.46268 * 27 18 17 49 49 H 1.09002 * 109.49632 * 301.33717 * 28 15 4 50 50 H 1.09000 * 109.49543 * 61.43760 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2489 -1.3584 5 6 3.3597 -1.5117 -1.7722 6 8 3.7647 -1.7189 -2.8999 7 6 3.1140 -2.6419 -0.8579 8 6 4.0460 -3.2156 0.0358 9 6 5.4760 -2.7793 0.2248 10 7 3.4516 -4.1891 0.6687 11 7 2.1304 -4.2832 0.2174 12 6 1.1337 -5.2509 0.6826 13 6 1.9284 -3.3332 -0.7096 14 6 0.6445 -3.0722 -1.4544 15 6 3.3782 0.8741 -2.2671 16 6 4.4331 1.8017 -1.6599 17 6 4.7107 2.9558 -2.6282 18 7 3.4395 3.6179 -2.9514 19 6 3.2946 4.9694 -2.7848 20 1 3.8755 5.4863 -2.0352 21 6 2.4013 5.6747 -3.5793 22 7 1.9460 5.1396 -4.6923 23 14 1.8453 7.3835 -3.0687 24 1 2.4982 7.7544 -1.7876 25 1 2.2255 8.3621 -4.1190 26 1 0.3706 7.3927 -2.8942 27 6 2.3268 2.8024 -3.4570 28 6 2.0761 1.6499 -2.4795 29 1 -1.0499 0.0002 -0.0001 30 1 3.0098 -0.7815 0.6663 31 1 3.0090 0.9691 0.3444 32 1 5.5235 -2.0168 1.0024 33 1 6.0815 -3.6364 0.5190 34 1 5.8572 -2.3688 -0.7102 35 1 0.5900 -4.8336 1.5300 36 1 0.4352 -5.4698 -0.1251 37 1 1.6345 -6.1694 0.9887 38 1 0.6272 -3.6668 -2.3678 39 1 -0.2024 -3.3470 -0.8259 40 1 0.5805 -2.0141 -1.7085 41 1 3.7351 0.4954 -3.2248 42 1 4.0660 2.2003 -0.7142 43 1 5.3528 1.2428 -1.4870 44 1 5.1623 2.5667 -3.5408 45 1 5.3876 3.6718 -2.1622 46 1 1.3221 5.6328 -5.2477 47 1 2.5840 2.4009 -4.4372 48 1 1.4289 3.4153 -3.5373 49 1 1.3181 0.9829 -2.8901 50 1 1.7314 2.0500 -1.5259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754639580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:38 Heat of formation + Delta-G solvation = 101.853614 kcal Electronic energy + Delta-G solvation = -31497.936292 eV Core-core repulsion = 27528.536357 eV Total energy + Delta-G solvation = -3969.399935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.59119 -40.92063 -38.90000 -36.95632 -35.28312 -34.68530 -33.41353 -33.04680 -31.89540 -31.28392 -30.49449 -28.59801 -28.19773 -27.03813 -26.38833 -24.14087 -23.85453 -22.42375 -20.79473 -20.54440 -20.45251 -19.04278 -18.60874 -18.23633 -17.70320 -16.90310 -16.62663 -16.61366 -16.16465 -15.64870 -15.36878 -15.03303 -14.96810 -14.79751 -14.60795 -14.39217 -14.31048 -14.19700 -14.14550 -14.00644 -13.90417 -13.49262 -13.34905 -13.18237 -13.03533 -12.89849 -12.84346 -12.66878 -12.54661 -12.23336 -11.98632 -11.92526 -11.80599 -11.52444 -11.35783 -11.27153 -11.10512 -10.83241 -10.56053 -10.15727 -9.81233 -9.51570 -8.69185 -7.85732 -5.31605 0.66677 1.27702 1.45223 1.46256 1.48101 1.49920 1.60550 1.67934 1.97455 2.42516 2.53036 3.30280 3.39503 3.51284 3.56790 3.67046 3.76640 3.90853 4.04977 4.09848 4.21647 4.26607 4.34946 4.36699 4.39157 4.48711 4.49554 4.51821 4.64711 4.68187 4.72478 4.76819 4.79920 4.86861 4.89222 4.94001 5.02208 5.06428 5.08567 5.11773 5.17532 5.31929 5.45339 5.49936 5.57913 5.66217 5.70849 5.93948 6.34940 6.40568 6.59003 6.74554 7.11744 7.15579 7.85872 8.39054 9.21509 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.002977 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.842365 B = 9404.643100 C = 9963.406749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.228 4.228 3 C 0.222 3.778 4 N -0.586 5.586 5 C 0.606 3.394 6 O -0.580 6.580 7 C -0.308 4.308 8 C 0.104 3.896 9 C -0.077 4.077 10 N -0.317 5.317 11 N -0.359 5.359 12 C 0.087 3.913 13 C 0.137 3.863 14 C -0.098 4.098 15 C 0.154 3.846 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.258 4.258 20 H 0.072 0.928 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.291 1.291 27 C 0.184 3.816 28 C -0.118 4.118 29 H 0.243 0.757 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.009 0.991 45 H 0.066 0.934 46 H 0.249 0.751 47 H -0.011 1.011 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -20.283 15.482 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.229 4.229 3 C 0.100 3.900 4 N -0.315 5.315 5 C 0.394 3.606 6 O -0.459 6.459 7 C -0.323 4.323 8 C -0.062 4.062 9 C -0.136 4.136 10 N -0.139 5.139 11 N -0.139 5.139 12 C -0.052 4.052 13 C 0.005 3.995 14 C -0.156 4.156 15 C 0.052 3.948 16 C -0.163 4.163 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.388 4.388 20 H 0.089 0.911 21 C -0.247 4.247 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.057 3.943 28 C -0.158 4.158 29 H 0.259 0.741 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.027 0.973 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.007 0.993 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.286 -21.364 15.739 26.738 hybrid contribution -0.657 1.627 -1.144 2.095 sum -3.943 -19.737 14.595 24.862 Atomic orbital electron populations 1.25556 0.96555 1.00046 0.97469 1.23655 0.95293 1.01360 1.02582 1.18417 0.84324 1.04167 0.83090 1.48092 1.63995 1.05245 1.14184 1.17691 0.75279 0.82288 0.85345 1.90748 1.47760 1.85240 1.22148 1.19736 0.96288 1.06195 1.10103 1.22599 0.97596 0.93031 0.92974 1.20335 0.86899 1.02853 1.03478 1.77032 0.90555 1.22035 1.24296 1.48453 1.09593 1.26160 1.29656 1.22335 0.89165 0.91167 1.02576 1.21546 0.96584 0.89653 0.91716 1.20676 0.91158 1.03682 1.00055 1.20893 0.95771 0.85248 0.92935 1.22201 0.98274 0.96210 0.99596 1.21004 0.88043 0.93701 0.95453 1.44336 1.08459 1.03778 1.76560 1.19568 1.22209 0.84387 1.12684 0.91080 1.25826 1.02370 1.01459 0.95062 1.70208 1.35484 1.39536 1.13094 0.85214 0.77573 0.79854 0.77838 1.18791 1.22209 1.21735 1.20482 0.91950 0.90116 0.91714 1.22212 0.96164 0.96935 1.00500 0.74108 0.87440 0.87193 0.88262 0.89260 0.91239 0.88700 0.86946 0.88228 0.89040 0.87252 0.90891 0.91210 0.90802 0.90203 0.97327 0.91587 0.94183 0.99309 0.92357 0.93195 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 18.59 74.32 1.38 -2.26 16 2 C -0.23 -5.47 11.43 31.13 0.36 -5.11 16 3 C 0.22 5.34 5.17 84.57 0.44 5.77 16 4 N -0.59 -17.44 2.37 -811.99 -1.92 -19.36 16 5 C 0.61 19.67 6.83 86.66 0.59 20.26 16 6 O -0.58 -23.83 16.43 -4.05 -0.07 -23.90 16 7 C -0.31 -8.37 4.11 -20.15 -0.08 -8.45 16 8 C 0.10 2.59 6.96 43.51 0.30 2.89 16 9 C -0.08 -1.50 10.28 71.24 0.73 -0.77 16 10 N -0.32 -7.62 12.50 -46.68 -0.58 -8.20 16 11 N -0.36 -6.98 3.98 -354.31 -1.41 -8.39 16 12 C 0.09 0.77 11.06 127.77 1.41 2.18 16 13 C 0.14 3.04 7.01 42.14 0.30 3.33 16 14 C -0.10 -1.65 9.70 71.24 0.69 -0.96 16 15 C 0.15 5.49 2.48 45.02 0.11 5.60 16 16 C -0.12 -4.08 5.31 30.67 0.16 -3.92 16 17 C 0.14 5.97 6.52 86.36 0.56 6.54 16 18 N -0.61 -30.59 2.99 -699.11 -2.09 -32.68 16 19 C -0.26 -14.07 9.58 84.03 0.81 -13.26 16 20 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 21 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 22 N -0.94 -55.95 11.19 21.65 0.24 -55.71 16 23 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.18 9.13 5.30 86.36 0.46 9.59 16 28 C -0.12 -4.63 4.73 30.67 0.15 -4.48 16 29 H 0.24 3.14 7.80 -4.42 -0.03 3.11 16 30 H 0.11 2.31 6.64 -2.39 -0.02 2.30 16 31 H 0.11 2.51 6.46 -2.38 -0.02 2.49 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.51 8.01 -2.39 -0.02 1.49 16 35 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.11 0.45 7.64 -2.38 -0.02 0.44 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.05 7.71 -2.39 -0.02 1.03 16 40 H 0.07 1.55 6.57 -2.38 -0.02 1.54 16 41 H 0.07 2.92 6.90 -2.39 -0.02 2.90 16 42 H 0.07 2.30 6.72 -2.39 -0.02 2.28 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 46 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 47 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 48 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 49 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.06 2.43 7.02 -2.39 -0.02 2.42 16 Total: -1.00 -76.73 405.28 5.91 -70.82 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.93 Total: 16.32 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 8.78 Total: 14.46 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -5.77 Total: -124.35 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.90 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -76.73 5.91 -70.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754639580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.676 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds