Wall clock time and date at job start Wed Apr 1 2020 03:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35449 * 126.38630 * 2 1 4 4 N 1.33180 * 108.61976 * 180.02562 * 3 2 1 5 5 C 1.32652 * 109.12828 * 0.02562 * 4 3 2 6 6 C 1.40643 * 132.15108 * 180.02562 * 5 4 3 7 7 C 1.38439 * 119.09287 * 180.02562 * 6 5 4 8 8 C 1.47649 * 120.37726 * 179.97438 * 7 6 5 9 9 O 1.21585 * 119.99769 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00126 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99778 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47541 * 35.00263 * 11 10 8 13 13 C 1.53004 * 109.47098 * 155.00347 * 11 10 8 14 14 N 1.46499 * 109.47016 * 305.00001 * 13 11 10 15 15 C 1.36935 * 120.00366 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00020 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00572 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00441 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99614 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47289 * 89.99664 * 19 17 15 21 21 H 1.48499 * 109.46910 * 209.99784 * 19 17 15 22 22 H 1.48505 * 109.47100 * 329.99234 * 19 17 15 23 23 C 1.52999 * 109.47263 * 274.99833 * 11 10 8 24 24 C 1.53001 * 109.46818 * 60.00562 * 23 11 10 25 25 C 1.52999 * 109.47068 * 179.97438 * 23 11 10 26 26 C 1.53003 * 109.47449 * 300.00507 * 23 11 10 27 27 C 1.41782 * 119.25224 * 359.96675 * 7 6 5 28 28 C 1.34545 * 120.14610 * 0.02562 * 27 7 6 29 29 N 1.36429 * 126.39270 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47051 * 269.97409 * 1 2 3 31 31 H 1.08998 * 109.47601 * 29.97459 * 1 2 3 32 32 H 1.09001 * 109.46842 * 149.97916 * 1 2 3 33 33 H 1.08005 * 125.69137 * 0.02593 * 3 2 1 34 34 H 1.07999 * 120.45800 * 359.97438 * 6 5 4 35 35 H 0.97000 * 120.00216 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47188 * 64.99537 * 13 11 10 37 37 H 1.08996 * 109.47380 * 185.00269 * 13 11 10 38 38 H 0.97006 * 120.00092 * 0.02562 * 14 13 11 39 39 H 0.97000 * 120.00023 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47419 * 59.99615 * 24 23 11 41 41 H 1.08998 * 109.47055 * 179.97438 * 24 23 11 42 42 H 1.09007 * 109.46899 * 299.99508 * 24 23 11 43 43 H 1.09002 * 109.46910 * 60.01024 * 25 23 11 44 44 H 1.08998 * 109.47067 * 180.02562 * 25 23 11 45 45 H 1.09001 * 109.47739 * 300.00431 * 25 23 11 46 46 H 1.08997 * 109.46687 * 59.99654 * 26 23 11 47 47 H 1.08999 * 109.46770 * 179.97438 * 26 23 11 48 48 H 1.08998 * 109.46744 * 299.99798 * 26 23 11 49 49 H 1.07998 * 119.92542 * 180.29325 * 27 7 6 50 50 H 1.08005 * 119.51744 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3105 1.0904 0.0000 4 7 3.5788 0.6840 -0.0006 5 6 3.6103 -0.6421 -0.0015 6 6 4.6752 -1.5609 -0.0019 7 6 4.3945 -2.9166 -0.0034 8 6 5.4905 -3.9059 -0.0045 9 8 6.6473 -3.5317 -0.0044 10 7 5.2086 -5.2239 -0.0055 11 6 6.2961 -6.2055 -0.0059 12 1 7.1298 -5.8245 0.5840 13 6 5.7985 -7.5182 0.6026 14 7 5.2450 -7.2602 1.9342 15 6 4.7352 -8.2925 2.6756 16 1 4.7408 -9.2968 2.2785 17 6 4.2112 -8.0482 3.9376 18 7 3.7207 -9.0402 4.6500 19 14 4.2009 -6.3110 4.6243 20 1 2.9360 -5.6343 4.2402 21 1 4.3046 -6.3633 6.1047 22 1 5.3540 -5.5542 4.0738 23 6 6.7592 -6.4529 -1.4430 24 6 7.2569 -5.1403 -2.0515 25 6 7.8954 -7.4776 -1.4434 26 6 5.5891 -6.9877 -2.2711 27 6 3.0427 -3.3442 -0.0039 28 6 2.0476 -2.4387 -0.0033 29 7 2.3165 -1.0982 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.9782 2.1181 0.0004 34 1 5.6978 -1.2137 -0.0018 35 1 4.2857 -5.5225 -0.0059 36 1 5.0250 -7.9445 -0.0360 37 1 6.6294 -8.2189 0.6841 38 1 5.2390 -6.3580 2.2906 39 1 3.3542 -8.8694 5.5317 40 1 8.0905 -4.7593 -1.4616 41 1 7.5873 -5.3166 -3.0752 42 1 6.4477 -4.4099 -2.0512 43 1 7.5413 -8.4129 -1.0098 44 1 8.2257 -7.6535 -2.4671 45 1 8.7290 -7.0962 -0.8536 46 1 4.7801 -6.2573 -2.2707 47 1 5.9190 -7.1635 -3.2950 48 1 5.2346 -7.9228 -1.8375 49 1 2.8114 -4.3991 -0.0003 50 1 1.0215 -2.7758 -0.0032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755820993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:44 Heat of formation + Delta-G solvation = 62.083388 kcal Electronic energy + Delta-G solvation = -30926.086164 eV Core-core repulsion = 26954.961663 eV Total energy + Delta-G solvation = -3971.124502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.11548 -40.38752 -38.03907 -36.93753 -34.66125 -34.15811 -33.50029 -31.70479 -31.27208 -30.26806 -28.33775 -27.34724 -27.21956 -26.55181 -24.42039 -23.53508 -23.24563 -21.44341 -21.41166 -20.62515 -18.79914 -18.14489 -17.71879 -17.33555 -16.65784 -16.35363 -15.90746 -15.71024 -15.01888 -14.79981 -14.50978 -14.23149 -13.93375 -13.87100 -13.75174 -13.61419 -13.45965 -13.38175 -13.13177 -12.87008 -12.80606 -12.35569 -12.11618 -12.06510 -11.99142 -11.91538 -11.59883 -11.46817 -11.31207 -10.98984 -10.92477 -10.81820 -10.60747 -10.37441 -10.36311 -10.07238 -9.91893 -9.67718 -9.11785 -8.98818 -8.82931 -7.99784 -7.32438 -5.85002 -3.21175 0.27296 0.80106 2.25329 2.41792 2.83035 3.10116 3.29271 3.36629 3.40239 3.52041 3.98359 4.18888 4.29437 4.48769 4.51560 4.65991 4.71939 4.75892 4.91911 4.96416 5.04944 5.12879 5.15021 5.22201 5.37152 5.40988 5.43863 5.53981 5.56391 5.67333 5.72739 5.77518 5.78920 5.81832 5.82351 5.95187 6.03743 6.06901 6.13329 6.20741 6.30206 6.31871 6.33293 6.38098 6.50375 6.60413 6.73130 6.76958 7.55371 7.58524 7.90381 8.24122 8.33752 9.12424 9.84730 10.03871 11.33129 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.003952 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.968474 B = 7082.734911 C = 9295.765942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.063 4.063 3 C 0.033 3.967 4 N -0.478 5.478 5 C 0.207 3.793 6 C -0.002 4.002 7 C -0.121 4.121 8 C 0.562 3.438 9 O -0.530 6.530 10 N -0.704 5.704 11 C 0.145 3.855 12 H 0.090 0.910 13 C 0.146 3.854 14 N -0.755 5.755 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.009 3.991 18 N -0.931 5.931 19 Si 0.878 3.122 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.075 4.075 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.114 4.114 28 C 0.049 3.951 29 N -0.351 5.351 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.402 0.598 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.064 0.936 49 H 0.157 0.843 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 14.191 -15.439 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.178 4.178 3 C -0.121 4.121 4 N -0.197 5.197 5 C -0.034 4.034 6 C -0.023 4.023 7 C -0.130 4.130 8 C 0.349 3.651 9 O -0.408 6.408 10 N -0.355 5.355 11 C 0.040 3.960 12 H 0.108 0.892 13 C 0.018 3.982 14 N -0.401 5.401 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.187 4.187 18 N -0.579 5.579 19 Si 0.708 3.292 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.077 4.077 24 C -0.188 4.188 25 C -0.200 4.200 26 C -0.200 4.200 27 C -0.135 4.135 28 C -0.072 4.072 29 N -0.024 5.024 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.199 0.801 34 H 0.183 0.817 35 H 0.238 0.762 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.174 0.826 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.072 14.693 -15.353 21.472 hybrid contribution -1.334 0.497 0.765 1.617 sum -4.406 15.190 -14.588 21.516 Atomic orbital electron populations 1.20211 0.86301 1.03593 1.03013 1.21363 0.94944 0.85252 1.16205 1.22372 0.87823 0.98716 1.03180 1.70670 1.21851 1.06100 1.21061 1.20699 0.83629 0.90925 1.08149 1.20678 0.98312 0.89418 0.93892 1.20020 0.93674 0.93629 1.05712 1.17764 0.87997 0.82477 0.76895 1.90799 1.20316 1.79973 1.49667 1.45886 1.10884 1.05022 1.73720 1.21417 0.89946 0.89076 0.95535 0.89195 1.21097 0.97193 0.92941 0.86952 1.42727 1.74361 1.07524 1.15536 1.19035 1.31686 0.89756 0.97111 0.89083 1.24635 1.00699 0.96568 0.96793 1.69689 1.45920 1.29894 1.12406 0.86649 0.77796 0.85912 0.78797 1.21130 1.21608 1.20289 1.20886 0.95903 0.96204 0.94684 1.21899 1.01560 0.95966 0.99382 1.21898 0.97638 0.98831 1.01591 1.21926 0.97570 1.01283 0.99212 1.20912 0.90905 1.00465 1.01183 1.21418 1.01464 0.80114 1.04226 1.42723 1.08891 1.05762 1.44983 0.90701 0.89600 0.91567 0.80064 0.81712 0.76150 0.94420 0.93672 0.80499 0.92987 0.91908 0.93798 0.93008 0.91729 0.92733 0.92490 0.92956 0.93013 0.91717 0.82567 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.30 36.01 0.37 -0.07 16 2 C -0.06 -0.63 7.02 -81.54 -0.57 -1.20 16 3 C 0.03 0.36 11.75 -17.96 -0.21 0.15 16 4 N -0.48 -6.75 11.31 -12.80 -0.14 -6.90 16 5 C 0.21 2.86 7.79 -155.97 -1.22 1.64 16 6 C 0.00 -0.02 9.70 -38.60 -0.37 -0.40 16 7 C -0.12 -1.58 5.90 -104.63 -0.62 -2.20 16 8 C 0.56 8.26 6.13 -12.42 -0.08 8.19 16 9 O -0.53 -9.06 13.48 5.29 0.07 -8.99 16 10 N -0.70 -9.79 3.59 -54.81 -0.20 -9.99 16 11 C 0.14 2.15 1.69 -67.93 -0.11 2.04 16 12 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 13 C 0.15 2.52 5.10 -4.04 -0.02 2.50 16 14 N -0.76 -16.76 5.24 -59.91 -0.31 -17.07 16 15 C -0.25 -6.63 10.47 -15.06 -0.16 -6.78 16 16 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 17 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.49 13.97 55.49 0.78 -27.72 16 19 Si 0.88 21.80 27.73 -169.99 -4.71 17.09 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 23 C -0.08 -0.93 0.62 -154.51 -0.10 -1.03 16 24 C -0.13 -1.68 6.99 37.16 0.26 -1.42 16 25 C -0.14 -1.64 8.12 37.16 0.30 -1.34 16 26 C -0.14 -1.58 7.97 37.16 0.30 -1.28 16 27 C -0.11 -1.21 9.48 -39.53 -0.37 -1.58 16 28 C 0.05 0.48 10.80 -16.68 -0.18 0.30 16 29 N -0.35 -4.11 2.94 -58.55 -0.17 -4.28 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.17 2.21 7.67 -52.49 -0.40 1.81 16 35 H 0.40 5.06 6.67 -40.82 -0.27 4.79 16 36 H 0.04 0.63 6.17 -51.93 -0.32 0.31 16 37 H 0.05 0.81 6.71 -51.93 -0.35 0.46 16 38 H 0.36 8.11 5.20 -40.82 -0.21 7.90 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.06 0.89 7.53 -51.93 -0.39 0.50 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.70 5.77 -51.93 -0.30 0.40 16 43 H 0.06 0.76 6.55 -51.93 -0.34 0.42 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.56 7.60 -51.93 -0.39 0.16 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 49 H 0.16 1.35 6.46 -52.49 -0.34 1.01 16 50 H 0.17 1.08 8.04 -52.48 -0.42 0.66 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -34.18 394.00 -9.07 -43.26 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.44 Total: 10.98 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.88 Total: -2.32 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -0.05 Total: -65.95 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.18 -9.07 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755820993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.339 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds