Wall clock time and date at job start Wed Apr 1 2020 03:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35449 * 126.38630 * 2 1 4 4 N 1.33180 * 108.61976 * 180.02562 * 3 2 1 5 5 C 1.32652 * 109.12828 * 0.02562 * 4 3 2 6 6 C 1.40643 * 132.15108 * 180.02562 * 5 4 3 7 7 C 1.38439 * 119.09287 * 180.02562 * 6 5 4 8 8 C 1.47649 * 120.37726 * 179.97438 * 7 6 5 9 9 O 1.21585 * 119.99769 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00126 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99778 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47541 * 35.00263 * 11 10 8 13 13 C 1.53004 * 109.47098 * 155.00347 * 11 10 8 14 14 N 1.46499 * 109.47016 * 305.00001 * 13 11 10 15 15 C 1.36935 * 120.00366 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00020 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00572 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00441 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99614 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47289 * 89.99664 * 19 17 15 21 21 H 1.48499 * 109.46910 * 209.99784 * 19 17 15 22 22 H 1.48505 * 109.47100 * 329.99234 * 19 17 15 23 23 C 1.52999 * 109.47263 * 274.99833 * 11 10 8 24 24 C 1.53001 * 109.46818 * 60.00562 * 23 11 10 25 25 C 1.52999 * 109.47068 * 179.97438 * 23 11 10 26 26 C 1.53003 * 109.47449 * 300.00507 * 23 11 10 27 27 C 1.41782 * 119.25224 * 359.96675 * 7 6 5 28 28 C 1.34545 * 120.14610 * 0.02562 * 27 7 6 29 29 N 1.36429 * 126.39270 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47051 * 269.97409 * 1 2 3 31 31 H 1.08998 * 109.47601 * 29.97459 * 1 2 3 32 32 H 1.09001 * 109.46842 * 149.97916 * 1 2 3 33 33 H 1.08005 * 125.69137 * 0.02593 * 3 2 1 34 34 H 1.07999 * 120.45800 * 359.97438 * 6 5 4 35 35 H 0.97000 * 120.00216 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47188 * 64.99537 * 13 11 10 37 37 H 1.08996 * 109.47380 * 185.00269 * 13 11 10 38 38 H 0.97006 * 120.00092 * 0.02562 * 14 13 11 39 39 H 0.97000 * 120.00023 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47419 * 59.99615 * 24 23 11 41 41 H 1.08998 * 109.47055 * 179.97438 * 24 23 11 42 42 H 1.09007 * 109.46899 * 299.99508 * 24 23 11 43 43 H 1.09002 * 109.46910 * 60.01024 * 25 23 11 44 44 H 1.08998 * 109.47067 * 180.02562 * 25 23 11 45 45 H 1.09001 * 109.47739 * 300.00431 * 25 23 11 46 46 H 1.08997 * 109.46687 * 59.99654 * 26 23 11 47 47 H 1.08999 * 109.46770 * 179.97438 * 26 23 11 48 48 H 1.08998 * 109.46744 * 299.99798 * 26 23 11 49 49 H 1.07998 * 119.92542 * 180.29325 * 27 7 6 50 50 H 1.08005 * 119.51744 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3105 1.0904 0.0000 4 7 3.5788 0.6840 -0.0006 5 6 3.6103 -0.6421 -0.0015 6 6 4.6752 -1.5609 -0.0019 7 6 4.3945 -2.9166 -0.0034 8 6 5.4905 -3.9059 -0.0045 9 8 6.6473 -3.5317 -0.0044 10 7 5.2086 -5.2239 -0.0055 11 6 6.2961 -6.2055 -0.0059 12 1 7.1298 -5.8245 0.5840 13 6 5.7985 -7.5182 0.6026 14 7 5.2450 -7.2602 1.9342 15 6 4.7352 -8.2925 2.6756 16 1 4.7408 -9.2968 2.2785 17 6 4.2112 -8.0482 3.9376 18 7 3.7207 -9.0402 4.6500 19 14 4.2009 -6.3110 4.6243 20 1 2.9360 -5.6343 4.2402 21 1 4.3046 -6.3633 6.1047 22 1 5.3540 -5.5542 4.0738 23 6 6.7592 -6.4529 -1.4430 24 6 7.2569 -5.1403 -2.0515 25 6 7.8954 -7.4776 -1.4434 26 6 5.5891 -6.9877 -2.2711 27 6 3.0427 -3.3442 -0.0039 28 6 2.0476 -2.4387 -0.0033 29 7 2.3165 -1.0982 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.9782 2.1181 0.0004 34 1 5.6978 -1.2137 -0.0018 35 1 4.2857 -5.5225 -0.0059 36 1 5.0250 -7.9445 -0.0360 37 1 6.6294 -8.2189 0.6841 38 1 5.2390 -6.3580 2.2906 39 1 3.3542 -8.8694 5.5317 40 1 8.0905 -4.7593 -1.4616 41 1 7.5873 -5.3166 -3.0752 42 1 6.4477 -4.4099 -2.0512 43 1 7.5413 -8.4129 -1.0098 44 1 8.2257 -7.6535 -2.4671 45 1 8.7290 -7.0962 -0.8536 46 1 4.7801 -6.2573 -2.2707 47 1 5.9190 -7.1635 -3.2950 48 1 5.2346 -7.9228 -1.8375 49 1 2.8114 -4.3991 -0.0003 50 1 1.0215 -2.7758 -0.0032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755820993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:43 Heat of formation + Delta-G solvation = 41.208124 kcal Electronic energy + Delta-G solvation = -30926.991384 eV Core-core repulsion = 26954.961663 eV Total energy + Delta-G solvation = -3972.029721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.96003 -41.54086 -39.11219 -37.93836 -36.33408 -35.04646 -34.75235 -33.37295 -32.31017 -31.11506 -29.79215 -28.24497 -28.13397 -27.51429 -25.73497 -24.69612 -24.32166 -22.98836 -22.23152 -21.70802 -20.12829 -19.62411 -18.79782 -18.37466 -17.66783 -17.23544 -17.02865 -16.96926 -16.36263 -16.04473 -15.79624 -15.47763 -15.14912 -14.79974 -14.69905 -14.64749 -14.61477 -14.46116 -14.21892 -13.89335 -13.80231 -13.35911 -13.33099 -13.12862 -12.99683 -12.91084 -12.88097 -12.79330 -12.54285 -12.37096 -12.21236 -12.05129 -11.90597 -11.83697 -11.62641 -11.31067 -11.25354 -11.12948 -10.94891 -10.03218 -9.94634 -9.29387 -8.83075 -8.03377 -5.35646 -0.66814 -0.03375 1.32080 1.37469 1.42017 1.46536 1.53781 1.87595 1.99253 2.44530 2.52363 3.12961 3.28918 3.37142 3.45466 3.52889 3.64103 3.79933 3.88318 4.02437 4.02753 4.04732 4.26378 4.31864 4.32380 4.45068 4.47332 4.61273 4.70979 4.76045 4.83267 4.85184 4.87593 4.90118 4.97519 5.00275 5.06706 5.08195 5.09899 5.14652 5.24944 5.30856 5.33642 5.41169 5.53922 5.54758 5.60347 5.77946 5.93817 6.20396 6.46045 6.70880 7.06826 7.11532 7.82707 8.00340 9.18057 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.003952 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.968474 B = 7082.734911 C = 9295.765942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.052 4.052 3 C 0.015 3.985 4 N -0.513 5.513 5 C 0.178 3.822 6 C -0.017 4.017 7 C -0.125 4.125 8 C 0.562 3.438 9 O -0.561 6.561 10 N -0.699 5.699 11 C 0.154 3.846 12 H 0.065 0.935 13 C 0.146 3.854 14 N -0.757 5.757 15 C -0.225 4.225 16 H 0.066 0.934 17 C -0.052 4.052 18 N -0.979 5.979 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.301 1.301 22 H -0.271 1.271 23 C -0.069 4.069 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.123 4.123 28 C 0.058 3.942 29 N -0.357 5.357 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.210 0.790 34 H 0.151 0.849 35 H 0.411 0.589 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.362 0.638 39 H 0.257 0.743 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.178 0.822 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 15.171 -17.044 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.166 4.166 3 C -0.137 4.137 4 N -0.233 5.233 5 C -0.063 4.063 6 C -0.039 4.039 7 C -0.134 4.134 8 C 0.350 3.650 9 O -0.441 6.441 10 N -0.350 5.350 11 C 0.049 3.951 12 H 0.083 0.917 13 C 0.020 3.980 14 N -0.403 5.403 15 C -0.356 4.356 16 H 0.084 0.916 17 C -0.244 4.244 18 N -0.630 5.630 19 Si 0.768 3.232 20 H -0.194 1.194 21 H -0.228 1.228 22 H -0.197 1.197 23 C -0.071 4.071 24 C -0.180 4.180 25 C -0.199 4.199 26 C -0.196 4.196 27 C -0.144 4.144 28 C -0.062 4.062 29 N -0.030 5.030 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.227 0.773 34 H 0.169 0.831 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.195 0.805 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.195 0.805 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.244 15.684 -17.011 23.725 hybrid contribution -0.655 0.210 1.183 1.368 sum -5.899 15.893 -15.828 23.194 Atomic orbital electron populations 1.20410 0.83018 1.05389 1.04124 1.22115 0.96687 0.84337 1.13497 1.23005 0.86995 1.00579 1.03152 1.70610 1.23950 1.06740 1.22019 1.20672 0.84657 0.91031 1.09899 1.20588 0.98034 0.90020 0.95237 1.19919 0.94362 0.92776 1.06375 1.18018 0.88043 0.82781 0.76151 1.90784 1.21743 1.80437 1.51091 1.45794 1.11058 1.04675 1.73436 1.21225 0.89325 0.87763 0.96764 0.91664 1.21247 0.97333 0.94431 0.84971 1.42736 1.74215 1.06401 1.16908 1.19037 1.29759 0.89805 0.97037 0.91560 1.25281 1.01596 1.00048 0.97495 1.69843 1.48177 1.32120 1.12874 0.85652 0.78555 0.81717 0.77236 1.19386 1.22772 1.19656 1.20843 0.96847 0.96362 0.93016 1.21796 1.00459 0.95717 1.00012 1.21902 0.97065 0.98246 1.02694 1.21899 0.96915 1.01104 0.99728 1.21119 0.89780 1.01778 1.01720 1.22049 1.03076 0.79141 1.01954 1.42968 1.08371 1.06844 1.44778 0.89723 0.87478 0.90156 0.77292 0.83117 0.75164 0.92728 0.93771 0.80463 0.93381 0.93919 0.92018 0.93991 0.91964 0.90815 0.93255 0.92486 0.91407 0.91891 0.80509 0.77493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.30 71.24 0.73 0.18 16 2 C -0.05 -0.90 7.02 41.20 0.29 -0.61 16 3 C 0.02 0.31 11.75 83.84 0.99 1.30 16 4 N -0.51 -14.54 11.31 -194.41 -2.20 -16.74 16 5 C 0.18 4.90 7.79 133.97 1.04 5.95 16 6 C -0.02 -0.49 9.70 22.91 0.22 -0.26 16 7 C -0.13 -3.22 5.90 -19.87 -0.12 -3.34 16 8 C 0.56 16.51 6.13 86.73 0.53 17.04 16 9 O -0.56 -19.78 13.48 -3.98 -0.05 -19.83 16 10 N -0.70 -18.70 3.59 -445.58 -1.60 -20.30 16 11 C 0.15 4.47 1.69 44.99 0.08 4.54 16 12 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 13 C 0.15 4.91 5.10 86.38 0.44 5.35 16 14 N -0.76 -32.85 5.24 -343.45 -1.80 -34.65 16 15 C -0.23 -12.10 10.47 84.03 0.88 -11.22 16 16 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 17 C -0.05 -2.96 5.50 84.86 0.47 -2.50 16 18 N -0.98 -60.73 13.97 21.65 0.30 -60.43 16 19 Si 0.94 44.93 27.73 68.60 1.90 46.83 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 22 H -0.27 -12.51 6.52 99.48 0.65 -11.86 16 23 C -0.07 -1.61 0.62 -52.18 -0.03 -1.65 16 24 C -0.12 -3.04 6.99 71.98 0.50 -2.53 16 25 C -0.14 -3.07 8.12 71.98 0.58 -2.49 16 26 C -0.14 -2.72 7.97 71.98 0.57 -2.15 16 27 C -0.12 -2.36 9.48 22.30 0.21 -2.15 16 28 C 0.06 0.97 10.80 83.08 0.90 1.86 16 29 N -0.36 -7.64 2.94 -339.14 -1.00 -8.64 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.44 8.12 -2.39 -0.02 0.42 16 33 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.15 4.43 7.67 -2.91 -0.02 4.41 16 35 H 0.41 9.53 6.67 -92.71 -0.62 8.91 16 36 H 0.05 1.71 6.17 -2.39 -0.01 1.69 16 37 H 0.04 1.54 6.71 -2.39 -0.02 1.52 16 38 H 0.36 15.77 5.20 -92.70 -0.48 15.29 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.04 1.22 7.53 -2.39 -0.02 1.20 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.04 1.12 5.77 -2.38 -0.01 1.10 16 43 H 0.06 1.38 6.55 -2.39 -0.02 1.36 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.06 1.26 6.32 -2.39 -0.02 1.25 16 49 H 0.18 2.52 6.46 -2.91 -0.02 2.50 16 50 H 0.21 1.65 8.04 -2.91 -0.02 1.63 16 Total: -1.00 -76.07 394.00 3.66 -72.41 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.18 Total: 34.02 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 8.29 Total: 7.33 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -6.29 Total: -140.77 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Total: -76.07 3.66 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755820993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.620 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds