Wall clock time and date at job start Wed Apr 1 2020 03:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47354 * 2 1 4 4 C 1.52999 * 109.47273 * 120.00642 * 2 1 3 5 5 C 1.53007 * 109.46700 * 294.99563 * 4 2 1 6 6 C 1.47199 * 109.47414 * 54.99513 * 4 2 1 7 7 N 3.43552 * 81.12658 * 156.40065 * 2 1 3 8 8 N 1.46502 * 109.47467 * 175.00039 * 4 2 1 9 9 C 1.34769 * 120.00150 * 179.97438 * 8 4 2 10 10 O 1.21283 * 120.00423 * 359.97438 * 9 8 4 11 11 C 1.50706 * 119.99889 * 179.97438 * 9 8 4 12 12 N 1.46901 * 109.47042 * 174.32949 * 11 9 8 13 13 C 1.46904 * 110.99769 * 287.76996 * 12 11 9 14 14 C 1.50689 * 109.47258 * 294.41210 * 13 12 11 15 15 H 1.08004 * 120.00338 * 5.33898 * 14 13 12 16 16 C 1.37874 * 120.00332 * 185.33208 * 14 13 12 17 17 N 1.31515 * 120.00609 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99801 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47670 * 89.99605 * 18 16 14 20 20 H 1.48505 * 109.46966 * 210.00037 * 18 16 14 21 21 H 1.48500 * 109.46897 * 329.99385 * 18 16 14 22 22 C 1.46898 * 111.00188 * 163.81773 * 12 11 9 23 23 C 1.50701 * 109.47401 * 189.99895 * 22 12 11 24 24 C 1.38231 * 119.61641 * 95.02198 * 23 22 12 25 25 C 1.38624 * 119.15968 * 179.74847 * 24 23 22 26 26 C 1.38675 * 118.41746 * 0.46969 * 25 24 23 27 27 C 1.38179 * 119.16433 * 359.51016 * 26 25 24 28 28 N 1.31851 * 119.61781 * 274.99919 * 23 22 12 29 29 H 1.08997 * 109.47117 * 299.99630 * 1 2 3 30 30 H 1.09002 * 109.47264 * 59.99893 * 1 2 3 31 31 H 1.09001 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46950 * 240.00077 * 2 1 3 33 33 H 1.09005 * 109.47029 * 60.00126 * 3 2 1 34 34 H 1.09003 * 109.47193 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47035 * 300.00248 * 3 2 1 36 36 H 1.08995 * 109.47105 * 299.99826 * 5 4 2 37 37 H 1.09002 * 109.46989 * 60.00670 * 5 4 2 38 38 H 1.09002 * 109.46696 * 179.97438 * 5 4 2 39 39 H 0.97003 * 119.99814 * 359.97438 * 8 4 2 40 40 H 1.08998 * 109.46934 * 54.33014 * 11 9 8 41 41 H 1.09005 * 109.47163 * 294.32881 * 11 9 8 42 42 H 1.09002 * 109.47027 * 54.41781 * 13 12 11 43 43 H 1.08999 * 109.46737 * 174.41574 * 13 12 11 44 44 H 0.96996 * 120.00076 * 180.02562 * 17 16 14 45 45 H 1.09001 * 109.46809 * 69.99632 * 22 12 11 46 46 H 1.09006 * 109.46717 * 310.00162 * 22 12 11 47 47 H 1.07996 * 120.41906 * 359.95402 * 24 23 22 48 48 H 1.07997 * 120.79374 * 180.23081 * 25 24 23 49 49 H 1.08006 * 120.42028 * 179.77893 * 26 25 24 50 50 H 1.08007 * 119.61716 * 180.25494 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6353 0.0688 2.4953 6 6 1.4530 -2.0699 1.3111 7 7 1.0000 -3.1105 1.3589 8 7 3.5001 -0.8265 1.1905 9 6 4.1730 -1.4285 2.1910 10 8 3.5701 -1.8828 3.1402 11 6 5.6750 -1.5371 2.1303 12 7 6.1760 -2.1058 3.3887 13 6 6.0707 -1.1332 4.4847 14 6 6.9900 0.0297 4.2144 15 1 7.5272 0.0875 3.2791 16 6 7.1456 1.0201 5.1608 17 7 7.9476 2.0353 4.9248 18 14 6.2170 0.9200 6.7787 19 1 7.0361 0.1839 7.7749 20 1 5.9442 2.2915 7.2785 21 1 4.9325 0.2051 6.5687 22 6 7.5576 -2.5817 3.2382 23 6 7.9522 -3.3728 4.4587 24 6 7.8249 -4.7492 4.4512 25 6 8.1957 -5.4679 5.5771 26 6 8.6736 -4.7714 6.6769 27 6 8.7733 -3.3948 6.6108 28 7 8.4154 -2.7440 5.5210 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.0699 1.0673 2.4494 37 1 0.5489 0.1470 2.5390 38 1 1.9982 -0.4454 3.3852 39 1 3.9824 -0.4628 0.4315 40 1 6.1052 -0.5466 1.9825 41 1 5.9592 -2.1843 1.3005 42 1 5.0434 -0.7756 4.5556 43 1 6.3547 -1.6106 5.4225 44 1 8.0572 2.7319 5.5908 45 1 8.2258 -1.7278 3.1269 46 1 7.6289 -3.2165 2.3549 47 1 7.4445 -5.2584 3.5781 48 1 8.1107 -6.5443 5.5986 49 1 8.9683 -5.2987 7.5723 50 1 9.1484 -2.8454 7.4617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174838666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:46 Heat of formation + Delta-G solvation = 46.099476 kcal Electronic energy + Delta-G solvation = -30963.616059 eV Core-core repulsion = 26991.798443 eV Total energy + Delta-G solvation = -3971.817616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.33566 -39.74340 -37.99270 -36.18078 -35.59310 -33.28987 -32.36773 -32.02724 -31.36846 -29.98561 -28.05843 -27.52033 -27.14260 -25.26217 -24.02066 -23.03062 -22.08648 -21.01205 -20.46040 -19.45527 -17.72751 -17.36634 -16.67772 -16.32748 -16.02391 -15.72439 -15.26060 -15.04907 -14.63195 -14.43217 -14.24924 -14.09446 -13.83231 -13.48502 -13.40091 -13.16208 -12.94398 -12.86975 -12.63614 -12.56124 -12.37456 -12.30502 -12.16640 -12.08041 -11.58506 -11.51619 -11.36121 -11.32732 -11.17778 -11.11686 -11.03350 -10.82945 -10.73490 -10.29172 -9.85489 -9.51446 -9.39769 -9.26978 -9.15380 -8.75381 -8.60218 -8.43988 -7.24006 -6.00154 -3.96243 1.52475 1.72347 2.54737 2.83727 3.01684 3.38417 3.44260 3.46862 3.53148 3.86557 4.21495 4.36884 4.53175 4.57679 4.77055 4.84808 5.02252 5.06879 5.12727 5.17750 5.23952 5.35214 5.38203 5.40741 5.43130 5.52947 5.53845 5.60131 5.66609 5.68033 5.74918 5.81309 5.86417 5.93236 6.01262 6.05271 6.10502 6.18316 6.37030 6.40678 6.49462 6.52153 6.69147 6.96085 7.12479 7.32662 7.56374 7.60579 7.65142 8.00346 8.01979 8.50029 8.60197 8.62246 8.97746 9.66217 11.12859 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.003699 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.721820 B = 7567.831789 C = 9105.690756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.152 4.152 4 C 0.284 3.716 5 C -0.169 4.169 6 C 0.213 3.787 7 N -0.425 5.425 8 N -0.731 5.731 9 C 0.523 3.477 10 O -0.505 6.505 11 C 0.041 3.959 12 N -0.512 5.512 13 C 0.156 3.844 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.083 3.917 17 N -0.902 5.902 18 Si 0.871 3.129 19 H -0.276 1.276 20 H -0.291 1.291 21 H -0.266 1.266 22 C 0.103 3.897 23 C 0.156 3.844 24 C -0.163 4.163 25 C -0.085 4.085 26 C -0.187 4.187 27 C 0.095 3.905 28 N -0.444 5.444 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.406 0.594 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.260 0.740 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.129 0.871 48 H 0.126 0.874 49 H 0.126 0.874 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -5.302 -9.751 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.209 4.209 4 C 0.193 3.807 5 C -0.227 4.227 6 C -0.107 4.107 7 N -0.101 5.101 8 N -0.388 5.388 9 C 0.310 3.690 10 O -0.377 6.377 11 C -0.091 4.091 12 N -0.236 5.236 13 C 0.030 3.970 14 C -0.571 4.571 15 H 0.090 0.910 16 C -0.119 4.119 17 N -0.541 5.541 18 Si 0.699 3.301 19 H -0.201 1.201 20 H -0.218 1.218 21 H -0.191 1.191 22 C -0.025 4.025 23 C 0.018 3.982 24 C -0.183 4.183 25 C -0.111 4.111 26 C -0.208 4.208 27 C -0.063 4.063 28 N -0.153 5.153 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.242 0.758 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.144 0.856 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.941 -6.556 -8.776 13.530 hybrid contribution 0.494 0.288 0.580 0.814 sum -7.447 -6.268 -8.196 12.725 Atomic orbital electron populations 1.21931 0.93701 1.02324 1.03022 1.21349 0.97110 0.97244 0.95459 1.21953 1.01905 0.94099 1.02927 1.17588 0.80776 0.83893 0.98407 1.22382 1.01984 1.01008 0.97360 1.29307 0.93762 0.94822 0.92813 1.81104 1.08991 1.11330 1.08658 1.46174 1.04648 1.62611 1.25366 1.20938 0.90507 0.76160 0.81437 1.90674 1.69690 1.45321 1.32053 1.21810 0.90691 1.01910 0.94646 1.62210 1.17946 1.39336 1.04077 1.20263 0.97116 0.89587 0.90075 1.21439 1.26300 1.05267 1.04138 0.91023 1.24739 0.94446 0.95020 0.97729 1.69910 1.37556 1.11375 1.35277 0.86917 0.81275 0.76835 0.85107 1.20145 1.21775 1.19098 1.20894 0.91476 0.98126 0.92024 1.21153 0.92429 0.90541 0.94079 1.21931 1.01620 0.95278 0.99476 1.21441 0.96634 0.99903 0.93158 1.22051 1.03163 0.96139 0.99410 1.22817 0.95753 0.91420 0.96260 1.67777 1.08166 1.40151 0.99185 0.91444 0.91458 0.92654 0.89737 0.91267 0.91625 0.91785 0.89768 0.91195 0.89284 0.75774 0.89620 0.89487 0.94951 0.94762 0.92990 0.90623 0.91252 0.85347 0.85626 0.85632 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.62 37.16 0.32 -0.81 16 2 C -0.09 -0.72 2.30 -90.62 -0.21 -0.93 16 3 C -0.15 -1.03 8.58 37.16 0.32 -0.71 16 4 C 0.28 3.30 0.49 -134.60 -0.07 3.23 16 5 C -0.17 -2.09 7.62 37.16 0.28 -1.80 16 6 C 0.21 3.14 11.25 -20.76 -0.23 2.91 16 7 N -0.43 -7.29 18.54 42.15 0.78 -6.51 16 8 N -0.73 -8.91 4.81 -50.22 -0.24 -9.15 16 9 C 0.52 8.80 6.81 -10.99 -0.07 8.72 16 10 O -0.51 -10.59 12.37 5.55 0.07 -10.52 16 11 C 0.04 0.69 5.32 -4.97 -0.03 0.66 16 12 N -0.51 -10.41 4.29 -238.96 -1.03 -11.44 16 13 C 0.16 3.81 3.55 -4.98 -0.02 3.79 16 14 C -0.53 -14.19 7.88 -34.45 -0.27 -14.47 16 15 H 0.07 2.00 6.21 -52.48 -0.33 1.68 16 16 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 17 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 18 Si 0.87 22.36 27.37 -169.99 -4.65 17.71 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 H -0.27 -6.86 6.70 56.52 0.38 -6.48 16 22 C 0.10 1.92 5.04 -4.98 -0.03 1.89 16 23 C 0.16 2.96 5.69 -82.59 -0.47 2.49 16 24 C -0.16 -2.56 9.72 -39.44 -0.38 -2.94 16 25 C -0.09 -1.19 10.18 -39.28 -0.40 -1.59 16 26 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 27 C 0.10 1.66 11.18 -17.55 -0.20 1.46 16 28 N -0.44 -9.26 8.89 -9.47 -0.08 -9.34 16 29 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.49 7.09 -51.93 -0.37 0.12 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.50 6.35 -51.93 -0.33 0.17 16 34 H 0.06 0.45 7.18 -51.93 -0.37 0.08 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.94 6.34 -51.93 -0.33 0.62 16 37 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 38 H 0.09 1.46 6.17 -51.93 -0.32 1.14 16 39 H 0.41 3.57 7.66 -40.82 -0.31 3.26 16 40 H 0.09 1.51 6.48 -51.93 -0.34 1.17 16 41 H 0.09 1.15 7.80 -51.93 -0.41 0.75 16 42 H 0.03 0.85 6.00 -51.93 -0.31 0.54 16 43 H 0.03 0.91 5.58 -51.93 -0.29 0.62 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.08 1.59 6.29 -51.93 -0.33 1.27 16 46 H 0.07 1.04 7.76 -51.93 -0.40 0.63 16 47 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 48 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 50 H 0.15 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -36.15 395.97 -7.59 -43.74 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.23 Total: 4.60 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.95 Total: 1.09 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.20 Total: -62.58 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.65 Total: 17.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.15 -7.59 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174838666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.837 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds