Wall clock time and date at job start Wed Apr 1 2020 03:43:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.50708 * 109.46896 * 2 1
4 4 C 1.38225 * 120.41668 * 93.93479 * 3 2 1
5 5 N 1.31854 * 120.76224 * 179.97438 * 4 3 2
6 6 C 1.31882 * 121.72632 * 359.97438 * 5 4 3
7 7 C 1.38176 * 120.76607 * 359.97438 * 6 5 4
8 8 C 1.38627 * 120.42017 * 273.88150 * 3 2 1
9 9 C 1.50702 * 120.79011 * 0.04966 * 8 3 2
10 10 H 1.09000 * 109.46941 * 33.35988 * 9 8 3
11 11 C 1.53003 * 109.47010 * 273.36520 * 9 8 3
12 12 N 1.46894 * 109.46993 * 153.36565 * 9 8 3
13 13 C 1.46907 * 110.99735 * 204.99767 * 12 9 8
14 14 C 1.50705 * 109.47009 * 179.97438 * 13 12 9
15 15 O 1.21280 * 119.99875 * 0.02562 * 14 13 12
16 16 N 1.34769 * 120.00179 * 180.02562 * 14 13 12
17 17 C 1.46496 * 120.00291 * 180.02562 * 16 14 13
18 18 C 1.50699 * 109.47603 * 89.99774 * 17 16 14
19 19 H 1.07997 * 119.99732 * 359.97438 * 18 17 16
20 20 C 1.37876 * 120.00395 * 180.02562 * 18 17 16
21 21 N 1.31512 * 120.00098 * 179.97438 * 20 18 17
22 22 Si 1.86808 * 119.99764 * 359.97438 * 20 18 17
23 23 H 1.48498 * 109.46874 * 89.99890 * 22 20 18
24 24 H 1.48497 * 109.46829 * 210.00111 * 22 20 18
25 25 H 1.48502 * 109.47053 * 330.00038 * 22 20 18
26 26 C 1.46508 * 119.99952 * 359.97438 * 16 14 13
27 27 C 1.53001 * 109.46678 * 89.99934 * 26 16 14
28 28 C 1.47203 * 109.46882 * 179.97438 * 27 26 16
29 29 N 8.09041 * 53.51450 * 259.48572 * 2 1 3
30 30 H 1.08998 * 109.47651 * 184.87090 * 1 2 3
31 31 H 1.09002 * 109.47161 * 304.87360 * 1 2 3
32 32 H 1.09000 * 109.47332 * 64.86804 * 1 2 3
33 33 H 1.08997 * 109.47148 * 240.00219 * 2 1 3
34 34 H 1.08996 * 109.47171 * 120.00281 * 2 1 3
35 35 H 1.08007 * 119.62130 * 0.25231 * 4 3 2
36 36 H 1.07999 * 119.61917 * 180.02562 * 6 5 4
37 37 H 1.08003 * 120.42258 * 180.02562 * 7 6 5
38 38 H 1.09002 * 109.47230 * 54.88581 * 11 9 8
39 39 H 1.09000 * 109.46812 * 174.88768 * 11 9 8
40 40 H 1.08995 * 109.47329 * 294.88720 * 11 9 8
41 41 H 1.00898 * 111.00466 * 328.95334 * 12 9 8
42 42 H 1.08994 * 109.47446 * 300.00027 * 13 12 9
43 43 H 1.08999 * 109.46515 * 60.00543 * 13 12 9
44 44 H 1.09003 * 109.47102 * 209.99850 * 17 16 14
45 45 H 1.09003 * 109.46743 * 329.99268 * 17 16 14
46 46 H 0.97002 * 119.99684 * 179.97438 * 21 20 18
47 47 H 1.08993 * 109.47064 * 210.00075 * 26 16 14
48 48 H 1.08994 * 109.47075 * 330.00653 * 26 16 14
49 49 H 1.08997 * 109.47712 * 300.00589 * 27 26 16
50 50 H 1.09001 * 109.47160 * 60.00464 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.3426 2.0534 1.1892
5 7 2.7831 3.2962 1.1971
6 6 2.9451 3.9817 0.0821
7 6 2.6564 3.4147 -1.1444
8 6 2.1899 2.1097 -1.1927
9 6 1.8627 1.4556 -2.5103
10 1 1.0277 0.7677 -2.3770
11 6 3.0840 0.6835 -3.0136
12 7 1.4966 2.4861 -3.4910
13 6 0.6334 1.9300 -4.5416
14 6 0.2789 3.0142 -5.5266
15 8 0.7038 4.1392 -5.3690
16 7 -0.5104 2.7337 -6.5824
17 6 -0.8545 3.7875 -7.5401
18 6 0.1752 3.8228 -8.6398
19 1 1.0034 3.1298 -8.6265
20 6 0.0605 4.7403 -9.6625
21 7 0.9594 4.7714 -10.6220
22 14 -1.3718 5.9394 -9.6853
23 1 -0.9947 7.1748 -8.9527
24 1 -1.7093 6.2806 -11.0905
25 1 -2.5499 5.3158 -9.0306
26 6 -1.0232 1.3746 -6.7729
27 6 -2.3671 1.2316 -6.0557
28 6 -2.8828 -0.1338 -6.2477
29 7 -3.2808 -1.1870 -6.3955
30 1 -0.3634 -1.0239 0.0873
31 1 -0.3633 0.5876 0.8431
32 1 -0.3634 0.4364 -0.9304
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8899
35 1 2.2273 1.5221 2.1224
36 1 3.3085 4.9976 0.1282
37 1 2.7916 3.9810 -2.0541
38 1 3.4109 -0.0192 -2.2471
39 1 2.8203 0.1368 -3.9191
40 1 3.8907 1.3827 -3.2333
41 1 1.0558 3.2739 -3.0403
42 1 1.1603 1.1277 -5.0580
43 1 -0.2780 1.5359 -4.0921
44 1 -1.8361 3.5832 -7.9678
45 1 -0.8740 4.7503 -7.0294
46 1 0.8785 5.4168 -11.3416
47 1 -1.1572 1.1828 -7.8375
48 1 -0.3135 0.6574 -6.3610
49 1 -2.2332 1.4235 -4.9912
50 1 -3.0770 1.9488 -6.4677
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000361132786.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:43:54
Heat of formation + Delta-G solvation = 26.245230 kcal
Electronic energy + Delta-G solvation = -29986.934231 eV
Core-core repulsion = 26014.255670 eV
Total energy + Delta-G solvation = -3972.678561 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.80382 -39.49446 -37.20469 -36.84758 -35.39113 -34.86578 -32.91951 -32.27512
-31.07930 -30.35341 -29.69376 -28.41379 -26.24411 -24.56636 -24.27522 -24.05132
-22.27560 -21.48976 -20.79213 -18.75097 -17.91024 -17.25534 -17.10675 -16.86079
-16.40053 -15.81405 -15.57290 -15.50953 -14.80822 -14.65159 -14.51903 -14.31855
-14.16879 -14.04633 -13.83942 -13.82224 -13.39769 -13.05473 -12.86254 -12.75570
-12.56675 -12.47687 -12.39227 -12.38247 -12.25702 -11.97460 -11.82328 -11.63013
-11.59982 -11.40475 -11.17728 -11.11666 -10.89644 -10.59572 -10.24719 -9.70270
-9.61900 -9.59867 -9.19047 -9.12520 -8.64424 -8.56364 -7.95550 -6.13663
-4.13426 0.91629 1.04281 2.61031 2.69543 3.14466 3.24100 3.29023
3.31656 3.39403 3.58379 3.85937 4.17445 4.21103 4.30330 4.34050
4.48679 4.55549 4.73998 4.80470 4.89748 4.94172 4.96023 4.98442
5.06984 5.10211 5.16430 5.18608 5.23143 5.33672 5.40135 5.43121
5.47692 5.53862 5.61604 5.65830 5.67281 5.69607 5.83942 5.87983
5.95429 6.08557 6.13093 6.50618 6.53320 6.75674 6.86286 7.15270
7.20719 7.45554 7.53315 7.79018 8.03187 8.39638 8.79303 8.90798
9.45660 10.99624
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010684 B = 0.002897 C = 0.002454
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2620.102611 B = 9663.995326 C =11405.315535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.085 4.085
3 C -0.130 4.130
4 C 0.096 3.904
5 N -0.486 5.486
6 C 0.092 3.908
7 C -0.152 4.152
8 C -0.042 4.042
9 C 0.122 3.878
10 H 0.061 0.939
11 C -0.138 4.138
12 N -0.665 5.665
13 C 0.039 3.961
14 C 0.509 3.491
15 O -0.517 6.517
16 N -0.593 5.593
17 C 0.216 3.784
18 C -0.531 4.531
19 H 0.076 0.924
20 C 0.073 3.927
21 N -0.895 5.895
22 Si 0.875 3.125
23 H -0.273 1.273
24 H -0.285 1.285
25 H -0.266 1.266
26 C 0.117 3.883
27 C -0.051 4.051
28 C 0.215 3.785
29 N -0.441 5.441
30 H 0.061 0.939
31 H 0.056 0.944
32 H 0.054 0.946
33 H 0.077 0.923
34 H 0.075 0.925
35 H 0.151 0.849
36 H 0.156 0.844
37 H 0.149 0.851
38 H 0.057 0.943
39 H 0.062 0.938
40 H 0.069 0.931
41 H 0.353 0.647
42 H 0.101 0.899
43 H 0.054 0.946
44 H 0.032 0.968
45 H 0.039 0.961
46 H 0.265 0.735
47 H 0.097 0.903
48 H 0.078 0.922
49 H 0.105 0.895
50 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.389 -9.491 21.047 23.130
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.122 4.122
3 C -0.132 4.132
4 C -0.061 4.061
5 N -0.194 5.194
6 C -0.065 4.065
7 C -0.172 4.172
8 C -0.051 4.051
9 C 0.013 3.987
10 H 0.078 0.922
11 C -0.196 4.196
12 N -0.299 5.299
13 C -0.093 4.093
14 C 0.295 3.705
15 O -0.392 6.392
16 N -0.326 5.326
17 C 0.096 3.904
18 C -0.570 4.570
19 H 0.094 0.906
20 C -0.129 4.129
21 N -0.533 5.533
22 Si 0.702 3.298
23 H -0.199 1.199
24 H -0.211 1.211
25 H -0.190 1.190
26 C -0.009 4.009
27 C -0.092 4.092
28 C -0.103 4.103
29 N -0.118 5.118
30 H 0.080 0.920
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.096 0.904
34 H 0.094 0.906
35 H 0.169 0.831
36 H 0.173 0.827
37 H 0.167 0.833
38 H 0.076 0.924
39 H 0.081 0.919
40 H 0.088 0.912
41 H 0.174 0.826
42 H 0.119 0.881
43 H 0.072 0.928
44 H 0.050 0.950
45 H 0.057 0.943
46 H 0.075 0.925
47 H 0.116 0.884
48 H 0.096 0.904
49 H 0.123 0.877
50 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -0.930 -9.988 21.153 23.411
hybrid contribution -1.520 0.593 -0.571 1.728
sum -2.450 -9.395 20.582 22.757
Atomic orbital electron populations
1.21762 0.94500 1.02036 1.02224 1.20532 0.96315 0.91997 1.03406
1.20733 1.01186 0.97716 0.93595 1.22588 0.95446 0.90965 0.97114
1.67658 1.12333 1.07881 1.31568 1.22790 0.96187 0.99823 0.87650
1.22215 0.99129 0.95519 1.00319 1.20220 0.96399 0.94124 0.94339
1.20495 0.98297 0.92708 0.87216 0.92169 1.21811 0.97395 0.99615
1.00761 1.60238 1.47362 1.08878 1.13398 1.21989 0.96098 0.97437
0.93818 1.20198 0.78905 0.89397 0.81970 1.90700 1.51196 1.22770
1.74484 1.47877 1.48972 1.10038 1.25680 1.19713 0.96295 0.86624
0.87793 1.21299 1.10426 1.19486 1.05768 0.90630 1.24858 0.96031
0.96808 0.95238 1.69891 1.34803 1.36389 1.12249 0.86878 0.83084
0.82347 0.77499 1.19894 1.21129 1.19032 1.21329 0.92037 0.85147
1.02425 1.19896 0.99671 0.85689 1.03960 1.29031 0.93395 0.94779
0.93120 1.81206 1.09242 1.12476 1.08893 0.92027 0.92440 0.92648
0.90418 0.90633 0.83147 0.82689 0.83284 0.92411 0.91917 0.91212
0.82631 0.88129 0.92826 0.95047 0.94300 0.92500 0.88423 0.90369
0.87709 0.86637
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.90 9.79 37.16 0.36 -0.54 16
2 C -0.08 -0.54 5.41 -27.88 -0.15 -0.69 16
3 C -0.13 -1.12 5.15 -104.48 -0.54 -1.66 16
4 C 0.10 0.90 10.85 -17.55 -0.19 0.71 16
5 N -0.49 -5.42 10.36 -13.25 -0.14 -5.56 16
6 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16
7 C -0.15 -1.57 8.95 -39.44 -0.35 -1.92 16
8 C -0.04 -0.41 4.93 -104.32 -0.51 -0.92 16
9 C 0.12 1.13 2.17 -68.87 -0.15 0.98 16
10 H 0.06 0.49 5.48 -51.93 -0.28 0.20 16
11 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16
12 N -0.66 -7.78 5.25 -109.22 -0.57 -8.35 16
13 C 0.04 0.45 4.52 -4.97 -0.02 0.43 16
14 C 0.51 8.58 7.71 -10.99 -0.08 8.50 16
15 O -0.52 -11.13 15.78 5.56 0.09 -11.04 16
16 N -0.59 -9.93 2.46 -175.06 -0.43 -10.36 16
17 C 0.22 4.62 4.23 -5.20 -0.02 4.60 16
18 C -0.53 -14.16 9.94 -34.44 -0.34 -14.50 16
19 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16
20 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16
21 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16
22 Si 0.88 20.37 27.47 -169.99 -4.67 15.70 16
23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
25 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16
26 C 0.12 1.40 5.17 -4.04 -0.02 1.38 16
27 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16
28 C 0.21 2.32 15.43 -20.77 -0.32 2.00 16
29 N -0.44 -6.00 18.53 42.14 0.78 -5.21 16
30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16
31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.05 0.37 6.94 -51.93 -0.36 0.01 16
33 H 0.08 0.48 5.98 -51.93 -0.31 0.17 16
34 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16
35 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16
36 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16
37 H 0.15 1.60 7.18 -52.48 -0.38 1.23 16
38 H 0.06 0.45 7.17 -51.93 -0.37 0.07 16
39 H 0.06 0.55 7.59 -51.93 -0.39 0.16 16
40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
41 H 0.35 4.32 7.10 -39.29 -0.28 4.04 16
42 H 0.10 1.08 6.80 -51.93 -0.35 0.73 16
43 H 0.05 0.46 7.10 -51.93 -0.37 0.10 16
44 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16
45 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16
46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
47 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16
48 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16
49 H 0.10 0.71 7.22 -51.93 -0.37 0.33 16
50 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16
LS Contribution 410.81 15.07 6.19 6.19
Total: -1.00 -34.46 410.81 -7.95 -42.41
By element:
Atomic # 1 Polarization: 10.09 SS G_CDS: -7.50 Total: 2.60 kcal
Atomic # 6 Polarization: 1.98 SS G_CDS: -2.48 Total: -0.49 kcal
Atomic # 7 Polarization: -55.78 SS G_CDS: 0.41 Total: -55.36 kcal
Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal
Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -34.46 -7.95 -42.41 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000361132786.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.656 kcal
(2) G-P(sol) polarization free energy of solvation -34.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds