Wall clock time and date at job start Wed Apr 1 2020 02:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30109 * 124.94835 * 2 1 4 4 C 1.35785 * 109.64169 * 180.26434 * 3 2 1 5 5 C 1.39745 * 133.60262 * 179.74247 * 4 3 2 6 6 C 1.36600 * 119.88687 * 180.02562 * 5 4 3 7 7 C 1.38778 * 120.67036 * 359.96202 * 6 5 4 8 8 C 1.37851 * 120.45144 * 0.02562 * 7 6 5 9 9 C 1.38833 * 119.68873 * 0.02562 * 8 7 6 10 10 N 1.36036 * 124.95237 * 179.85303 * 2 1 3 11 11 C 1.46506 * 126.34599 * 0.02562 * 10 2 1 12 12 C 1.53000 * 109.47033 * 269.68967 * 11 10 2 13 13 C 1.52997 * 109.47273 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.47555 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 H 1.09003 * 109.46824 * 319.71785 * 17 15 14 19 19 N 1.46900 * 109.46704 * 199.72391 * 17 15 14 20 20 C 1.53002 * 109.47121 * 79.72099 * 17 15 14 21 21 C 1.52996 * 109.46946 * 185.00076 * 20 17 15 22 22 C 1.50694 * 109.47332 * 179.97438 * 21 20 17 23 23 H 1.08000 * 119.99886 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00223 * 179.97438 * 22 21 20 25 25 N 1.31512 * 119.99937 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99885 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47515 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47340 * 120.00537 * 26 24 22 29 29 H 1.48506 * 109.47296 * 240.00251 * 26 24 22 30 30 H 1.09004 * 109.46619 * 270.14742 * 1 2 3 31 31 H 1.08994 * 109.46965 * 30.14540 * 1 2 3 32 32 H 1.08997 * 109.46983 * 150.15066 * 1 2 3 33 33 H 1.08004 * 120.05593 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.66208 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.77448 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.15795 * 179.97438 * 8 7 6 37 37 H 1.08992 * 109.47032 * 149.69052 * 11 10 2 38 38 H 1.08997 * 109.47284 * 29.68616 * 11 10 2 39 39 H 1.08998 * 109.47307 * 59.99732 * 12 11 10 40 40 H 1.09005 * 109.46653 * 299.99667 * 12 11 10 41 41 H 1.08998 * 109.47382 * 59.99521 * 13 12 11 42 42 H 1.09002 * 109.47216 * 299.99958 * 13 12 11 43 43 H 0.97000 * 119.99484 * 359.97438 * 14 13 12 44 44 H 1.00907 * 110.99710 * 176.04704 * 19 17 15 45 45 H 1.00898 * 110.99811 * 299.99578 * 19 17 15 46 46 H 1.08996 * 109.46933 * 304.99916 * 20 17 15 47 47 H 1.08998 * 109.47170 * 65.00270 * 20 17 15 48 48 H 1.09000 * 109.47119 * 300.00211 * 21 20 17 49 49 H 1.09002 * 109.47419 * 59.99484 * 21 20 17 50 50 H 0.97004 * 119.99765 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7587 1.4297 -0.0131 6 6 5.9532 0.7669 -0.0184 7 6 5.9931 -0.6202 -0.0160 8 6 4.8254 -1.3528 -0.0087 9 6 3.6020 -0.6965 -0.0043 10 7 2.2864 -1.1150 0.0029 11 6 1.8166 -2.5027 0.0059 12 6 1.6600 -2.9849 1.4494 13 6 1.1700 -4.4343 1.4527 14 7 1.0206 -4.8963 2.8348 15 6 0.5980 -6.1516 3.0839 16 8 0.3410 -6.8987 2.1636 17 6 0.4384 -6.6248 4.5057 18 1 1.2655 -6.2498 5.1084 19 7 0.4372 -8.0935 4.5357 20 6 -0.8834 -6.1020 5.0719 21 6 -0.9880 -6.4764 6.5516 22 6 -2.2895 -5.9610 7.1095 23 1 -2.9739 -5.4207 6.4722 24 6 -2.6071 -6.1800 8.4332 25 7 -1.7740 -6.8383 9.2091 26 14 -4.2208 -5.5416 9.1244 27 1 -4.9747 -4.8399 8.0545 28 1 -5.0272 -6.6808 9.6319 29 1 -3.9439 -4.5971 10.2364 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5115 33 1 4.7392 2.5095 -0.0144 34 1 6.8758 1.3283 -0.0244 35 1 6.9456 -1.1294 -0.0199 36 1 4.8620 -2.4322 -0.0073 37 1 2.5406 -3.1324 -0.5110 38 1 0.8547 -2.5618 -0.5033 39 1 0.9360 -2.3551 1.9664 40 1 2.6220 -2.9259 1.9586 41 1 1.8943 -5.0639 0.9358 42 1 0.2082 -4.4939 0.9433 43 1 1.2265 -4.2989 3.5708 44 1 0.3961 -8.4358 5.4841 45 1 -0.3210 -8.4658 3.9838 46 1 -0.9194 -5.0176 4.9681 47 1 -1.7144 -6.5472 4.5248 48 1 -0.9518 -7.5609 6.6554 49 1 -0.1569 -6.0313 7.0987 50 1 -1.9973 -6.9921 10.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424136092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:49 Heat of formation + Delta-G solvation = -9.772573 kcal Electronic energy + Delta-G solvation = -28679.535675 eV Core-core repulsion = 24705.295265 eV Total energy + Delta-G solvation = -3974.240410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.17633 -40.92581 -38.48763 -37.43252 -36.83352 -35.28010 -34.83855 -32.66963 -32.15394 -31.68607 -30.89934 -28.53767 -28.38494 -26.91081 -25.27928 -23.30628 -23.08344 -22.81875 -22.37133 -21.23403 -20.77352 -18.88282 -18.34069 -18.14697 -18.08602 -16.99878 -16.76425 -16.67301 -16.50274 -16.23987 -15.94374 -15.61811 -15.49305 -15.04491 -14.92236 -14.64336 -14.54923 -14.20133 -14.00456 -13.98265 -13.84147 -13.64088 -13.44955 -13.29111 -12.95570 -12.84343 -12.78093 -12.69086 -12.50458 -12.32418 -12.27302 -12.04342 -11.81346 -11.73260 -11.39688 -11.28955 -10.93887 -10.75454 -10.57400 -10.12307 -9.64597 -9.25733 -9.05825 -8.22426 -6.32558 -0.00176 0.55840 1.38071 1.39900 1.51234 1.54131 1.61045 1.76650 2.16788 2.39225 2.91511 3.11472 3.22244 3.46042 3.61376 3.71244 3.76597 3.85284 4.00030 4.10952 4.12584 4.15621 4.16937 4.25773 4.29515 4.42866 4.45893 4.52451 4.59587 4.66323 4.67992 4.70504 4.83630 4.89203 4.91839 4.98357 5.07784 5.09397 5.25006 5.41742 5.46594 5.48743 5.58751 5.59646 5.65288 5.80326 5.97889 6.07046 6.18473 6.20521 6.47245 6.50355 6.83547 6.90514 7.21782 7.36705 8.88443 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.001877 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.188809 B =14914.257126 C =15810.470391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.280 3.720 3 N -0.540 5.540 4 C 0.011 3.989 5 C -0.090 4.090 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.116 4.116 9 C 0.030 3.970 10 N -0.485 5.485 11 C 0.112 3.888 12 C -0.134 4.134 13 C 0.127 3.873 14 N -0.721 5.721 15 C 0.529 3.471 16 O -0.570 6.570 17 C 0.079 3.921 18 H 0.108 0.892 19 N -0.831 5.831 20 C -0.120 4.120 21 C 0.028 3.972 22 C -0.543 4.543 23 H 0.056 0.944 24 C 0.003 3.997 25 N -0.927 5.927 26 Si 0.959 3.041 27 H -0.265 1.265 28 H -0.281 1.281 29 H -0.278 1.278 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.412 0.588 44 H 0.352 0.648 45 H 0.344 0.656 46 H 0.067 0.933 47 H 0.045 0.955 48 H 0.002 0.998 49 H 0.001 0.999 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 13.349 -21.483 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 N -0.261 5.261 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.145 4.145 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.079 4.079 10 N -0.175 5.175 11 C -0.010 4.010 12 C -0.173 4.173 13 C 0.003 3.997 14 N -0.374 5.374 15 C 0.315 3.685 16 O -0.448 6.448 17 C -0.037 4.037 18 H 0.125 0.875 19 N -0.362 5.362 20 C -0.160 4.160 21 C -0.009 4.009 22 C -0.581 4.581 23 H 0.074 0.926 24 C -0.195 4.195 25 N -0.567 5.567 26 Si 0.784 3.216 27 H -0.189 1.189 28 H -0.206 1.206 29 H -0.204 1.204 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.248 0.752 44 H 0.167 0.833 45 H 0.157 0.843 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.020 0.980 49 H 0.019 0.981 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.980 13.508 -22.337 29.153 hybrid contribution -1.381 -0.178 1.630 2.144 sum 11.598 13.330 -20.707 27.221 Atomic orbital electron populations 1.20584 0.81882 1.05927 1.05308 1.24305 0.97083 0.80478 0.96693 1.70384 1.01704 1.29041 1.24975 1.19510 0.92489 0.91733 1.06924 1.20268 0.89655 1.00170 1.00882 1.20996 0.97688 0.94935 1.00840 1.21302 0.98212 0.94012 0.98942 1.20302 0.88781 1.00536 1.04035 1.19179 0.86493 0.94953 1.07280 1.45418 1.04025 1.07893 1.60172 1.21898 1.03640 0.77871 0.97591 1.22010 1.03122 0.95008 0.97130 1.21209 1.01879 0.93945 0.82671 1.45865 1.68293 1.13468 1.09794 1.20630 0.75282 0.81656 0.90932 1.90628 1.51283 1.55726 1.47208 1.21429 0.99204 0.90507 0.92515 0.87461 1.58770 1.53629 1.05407 1.18409 1.22123 0.95358 1.01143 0.97374 1.18981 0.95554 0.95570 0.90766 1.21651 1.05083 1.35733 0.95592 0.92609 1.25879 1.00481 0.95436 0.97709 1.70067 1.37872 1.41963 1.06781 0.85491 0.79534 0.78163 0.78412 1.18873 1.20637 1.20382 0.88397 0.88387 0.87747 0.85334 0.82839 0.82497 0.84250 0.87531 0.86102 0.90057 0.90772 0.91224 0.90979 0.75151 0.83314 0.84303 0.91442 0.93613 0.97956 0.98062 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.17 71.24 0.72 -0.09 16 2 C 0.28 5.25 7.85 137.92 1.08 6.34 16 3 N -0.54 -13.69 11.27 -179.96 -2.03 -15.71 16 4 C 0.01 0.27 7.23 39.45 0.29 0.55 16 5 C -0.09 -1.79 10.05 22.25 0.22 -1.56 16 6 C -0.12 -1.79 9.96 22.02 0.22 -1.57 16 7 C -0.11 -1.38 10.03 22.31 0.22 -1.16 16 8 C -0.12 -1.80 10.05 22.32 0.22 -1.57 16 9 C 0.03 0.59 6.87 38.86 0.27 0.86 16 10 N -0.49 -7.97 2.81 -505.59 -1.42 -9.39 16 11 C 0.11 1.06 5.94 86.38 0.51 1.57 16 12 C -0.13 -1.46 5.65 30.59 0.17 -1.28 16 13 C 0.13 1.92 5.67 86.38 0.49 2.41 16 14 N -0.72 -14.86 5.56 -463.06 -2.57 -17.43 16 15 C 0.53 15.53 7.08 87.66 0.62 16.15 16 16 O -0.57 -20.35 16.25 -3.04 -0.05 -20.40 16 17 C 0.08 2.49 3.21 44.17 0.14 2.63 16 18 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 19 N -0.83 -27.52 8.94 -171.79 -1.54 -29.06 16 20 C -0.12 -4.45 4.78 30.59 0.15 -4.30 16 21 C 0.03 1.36 4.74 29.84 0.14 1.50 16 22 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 23 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 24 C 0.00 0.18 5.46 84.65 0.46 0.65 16 25 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 26 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 29 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 0.55 7.01 -2.39 -0.02 0.53 16 33 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 0.64 6.99 -2.39 -0.02 0.62 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.41 7.02 8.47 -92.71 -0.79 6.24 16 44 H 0.35 11.93 7.55 -89.69 -0.68 11.25 16 45 H 0.34 11.61 8.58 -89.70 -0.77 10.84 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 49 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -75.75 416.13 -0.38 -76.13 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -1.26 Total: 32.37 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 6.17 Total: -7.85 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -7.27 Total: -125.10 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.05 Total: -20.40 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -75.75 -0.38 -76.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424136092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.356 kcal (2) G-P(sol) polarization free energy of solvation -75.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds