Wall clock time and date at job start Wed Apr 1 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31821 * 119.16466 * 2 1 4 4 C 1.32183 * 120.64201 * 179.85664 * 3 2 1 5 5 C 1.39024 * 119.27761 * 0.04334 * 4 3 2 6 6 C 1.37767 * 118.45977 * 0.14730 * 5 4 3 7 7 N 1.31607 * 119.16979 * 179.97438 * 2 1 3 8 8 C 1.50444 * 122.58453 * 179.63121 * 6 5 4 9 9 C 1.52824 * 110.44064 * 17.58443 * 8 6 5 10 10 C 1.53308 * 108.50078 * 308.96445 * 9 8 6 11 11 H 1.08996 * 109.80144 * 310.02368 * 10 9 8 12 12 N 1.46501 * 109.63360 * 189.52081 * 10 9 8 13 13 C 1.34779 * 119.99792 * 156.28384 * 12 10 9 14 14 O 1.21586 * 120.00263 * 354.79835 * 13 12 10 15 15 N 1.34775 * 119.99585 * 174.79472 * 13 12 10 16 16 C 1.46935 * 120.62794 * 184.94361 * 15 13 12 17 17 C 1.52764 * 109.00763 * 233.58719 * 16 15 13 18 18 C 1.53042 * 109.38022 * 305.58757 * 17 16 15 19 19 C 1.50701 * 109.45465 * 181.26036 * 18 17 16 20 20 H 1.08001 * 120.00262 * 239.92618 * 19 18 17 21 21 C 1.37882 * 120.00152 * 59.93559 * 19 18 17 22 22 N 1.31516 * 119.99770 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46945 * 89.99759 * 23 21 19 25 25 H 1.48499 * 109.47313 * 210.00099 * 23 21 19 26 26 H 1.48499 * 109.46840 * 329.99677 * 23 21 19 27 27 C 1.53037 * 109.53810 * 61.24339 * 18 17 16 28 28 C 1.46923 * 120.63669 * 5.22565 * 15 13 12 29 29 C 1.50343 * 118.73135 * 180.16587 * 5 4 3 30 30 H 1.08997 * 109.47382 * 270.02471 * 1 2 3 31 31 H 1.09007 * 109.47123 * 30.02420 * 1 2 3 32 32 H 1.08999 * 109.47181 * 150.01753 * 1 2 3 33 33 H 1.08006 * 120.36593 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.31035 * 137.89002 * 8 6 5 35 35 H 1.09006 * 109.30788 * 257.29458 * 8 6 5 36 36 H 1.09006 * 109.62518 * 189.26022 * 9 8 6 37 37 H 1.09000 * 109.63947 * 68.67122 * 9 8 6 38 38 H 0.97004 * 120.00175 * 336.01252 * 12 10 9 39 39 H 1.09004 * 109.58406 * 353.41979 * 16 15 13 40 40 H 1.08991 * 109.58243 * 113.84674 * 16 15 13 41 41 H 1.08994 * 109.56425 * 185.55201 * 17 16 15 42 42 H 1.08999 * 109.38429 * 65.51592 * 17 16 15 43 43 H 1.08999 * 109.45796 * 301.22040 * 18 17 16 44 44 H 0.96998 * 119.99896 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.49692 * 178.67896 * 27 18 17 46 46 H 1.08998 * 109.52373 * 58.60126 * 27 18 17 47 47 H 1.08995 * 109.58741 * 246.15652 * 28 15 13 48 48 H 1.09004 * 109.58229 * 6.57857 * 28 15 13 49 49 H 1.08999 * 109.30714 * 77.04639 * 29 5 4 50 50 H 1.08998 * 109.14501 * 317.54371 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1493 1.1511 0.0000 4 6 3.4707 1.1852 0.0028 5 6 4.1816 -0.0095 0.0049 6 6 3.4765 -1.1931 0.0008 7 7 2.1484 -1.1492 0.0005 8 6 4.1509 -2.5379 -0.0055 9 6 5.6109 -2.4049 0.4260 10 6 6.2679 -1.3032 -0.4136 11 1 6.0638 -1.4733 -1.4707 12 7 7.7149 -1.3068 -0.1849 13 6 8.5454 -0.7952 -1.1150 14 8 8.1035 -0.4173 -2.1828 15 7 9.8658 -0.7024 -0.8613 16 6 10.7681 -0.0491 -1.8195 17 6 11.9118 -1.0041 -2.1566 18 6 12.5911 -1.4596 -0.8631 19 6 13.7392 -2.3775 -1.1954 20 1 13.7468 -3.3903 -0.8205 21 6 14.7799 -1.9243 -1.9780 22 7 14.7705 -0.6911 -2.4349 23 14 16.2034 -3.0618 -2.3894 24 1 15.9048 -3.7938 -3.6464 25 1 17.4419 -2.2615 -2.5649 26 1 16.3952 -4.0344 -1.2838 27 6 11.5797 -2.2042 0.0113 28 6 10.4314 -1.2579 0.3757 29 6 5.6841 0.0435 0.0120 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5136 33 1 3.9925 2.1308 0.0032 34 1 3.6311 -3.2051 0.6821 35 1 4.1090 -2.9573 -1.0108 36 1 6.1290 -3.3496 0.2607 37 1 5.6580 -2.1380 1.4818 38 1 8.0751 -1.6739 0.6376 39 1 10.2194 0.1971 -2.7286 40 1 11.1738 0.8607 -1.3773 41 1 12.6384 -0.4944 -2.7892 42 1 11.5152 -1.8715 -2.6843 43 1 12.9661 -0.5897 -0.3241 44 1 15.5025 -0.3724 -2.9858 45 1 12.0700 -2.5487 0.9219 46 1 11.1857 -3.0606 -0.5360 47 1 10.8091 -0.4486 1.0005 48 1 9.6607 -1.8090 0.9145 49 1 6.0315 0.2857 1.0164 50 1 6.0178 0.8161 -0.6808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542895492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:17 Heat of formation + Delta-G solvation = 5.199504 kcal Electronic energy + Delta-G solvation = -29975.072864 eV Core-core repulsion = 26001.481692 eV Total energy + Delta-G solvation = -3973.591172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68649 -40.11043 -37.97361 -36.66416 -34.54519 -34.03950 -33.47428 -31.86963 -31.09328 -30.70472 -29.96135 -27.73578 -26.07481 -25.06183 -23.49674 -23.17762 -22.82712 -22.07697 -20.38585 -20.22797 -18.85367 -18.17671 -17.58350 -16.55480 -16.50015 -16.27989 -15.56085 -15.38732 -14.65349 -14.58966 -14.43294 -14.24383 -14.16958 -13.71963 -13.62138 -13.45614 -13.22592 -13.12512 -12.83299 -12.72839 -12.67970 -12.43839 -12.33639 -12.11796 -11.86105 -11.43697 -11.27083 -11.16276 -11.04847 -10.94517 -10.68139 -10.64811 -10.45111 -10.08054 -9.81070 -9.58157 -9.52580 -9.32461 -9.21298 -9.04437 -8.91820 -8.38643 -7.94100 -6.03509 -4.10271 0.61278 0.77356 2.87685 3.27553 3.34852 3.36966 3.39292 3.47960 3.56629 3.80244 4.05733 4.16343 4.37760 4.39115 4.39958 4.58305 4.79749 4.89069 5.04404 5.05750 5.14191 5.18284 5.21131 5.26313 5.32728 5.42502 5.46405 5.50365 5.57607 5.71723 5.72125 5.76984 5.84882 5.90798 6.03364 6.18512 6.24089 6.39819 6.46478 6.56401 6.59548 6.73907 6.77733 6.95162 7.10951 7.21787 7.45889 7.69226 7.82889 7.91299 8.04447 8.25657 8.38549 8.89100 8.92996 9.54896 11.01838 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.034113 B = 0.001938 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.614594 B =14441.709310 C =14803.891138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.308 3.692 3 N -0.521 5.521 4 C 0.155 3.845 5 C -0.177 4.177 6 C 0.181 3.819 7 N -0.520 5.520 8 C -0.067 4.067 9 C -0.127 4.127 10 C 0.165 3.835 11 H 0.094 0.906 12 N -0.748 5.748 13 C 0.705 3.295 14 O -0.599 6.599 15 N -0.617 5.617 16 C 0.126 3.874 17 C -0.124 4.124 18 C 0.050 3.950 19 C -0.514 4.514 20 H 0.054 0.946 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.124 4.124 28 C 0.113 3.887 29 C -0.085 4.085 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.396 0.604 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.261 0.739 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.102 0.247 8.810 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 N -0.235 5.235 4 C -0.012 4.012 5 C -0.182 4.182 6 C 0.037 3.963 7 N -0.235 5.235 8 C -0.105 4.105 9 C -0.166 4.166 10 C 0.059 3.941 11 H 0.112 0.888 12 N -0.406 5.406 13 C 0.407 3.593 14 O -0.478 6.478 15 N -0.353 5.353 16 C 0.004 3.996 17 C -0.163 4.163 18 C 0.031 3.969 19 C -0.552 4.552 20 H 0.072 0.928 21 C -0.140 4.140 22 N -0.528 5.528 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.162 4.162 28 C -0.010 4.010 29 C -0.125 4.125 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.186 0.814 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.233 0.767 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.102 0.898 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.293 0.662 7.911 25.557 hybrid contribution 2.014 -0.669 0.187 2.130 sum -22.279 -0.007 8.098 23.705 Atomic orbital electron populations 1.20538 0.85767 1.04110 1.03750 1.23184 0.98152 0.83441 0.91131 1.68260 1.09871 1.30553 1.14854 1.23306 0.89493 0.98285 0.90152 1.21112 0.98387 0.94773 1.03916 1.21324 0.89140 0.95499 0.90359 1.68209 1.09340 1.30710 1.15240 1.20356 0.94115 0.91905 1.04153 1.21893 0.94531 0.99814 1.00346 1.20660 0.79020 0.93359 1.01047 0.88831 1.45298 1.05577 1.67371 1.22313 1.15874 0.81262 0.78656 0.83508 1.90871 1.76083 1.56571 1.24279 1.47473 1.04930 1.60359 1.22559 1.21688 0.90827 0.95535 0.91500 1.21949 0.95161 0.97644 1.01511 1.18620 0.91536 0.95283 0.91448 1.21180 1.04203 0.98407 1.31423 0.92770 1.24965 0.98113 0.95042 0.95849 1.69840 1.32272 1.15461 1.35270 0.86620 0.82002 0.80773 0.78741 1.20744 1.21249 1.20008 1.22012 0.95785 0.97814 1.00612 1.21715 0.96404 0.97198 0.85687 1.20801 0.88620 0.99971 1.03111 0.89766 0.89683 0.89695 0.81391 0.88609 0.88678 0.89444 0.90699 0.76736 0.90544 0.92564 0.87831 0.94392 0.95491 0.92937 0.92159 0.92900 0.91896 0.92275 0.89753 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.32 36.00 0.37 -0.22 16 2 C 0.31 3.31 7.64 -157.33 -1.20 2.10 16 3 N -0.52 -5.88 10.34 -10.68 -0.11 -5.99 16 4 C 0.16 1.56 10.93 -17.11 -0.19 1.38 16 5 C -0.18 -1.78 5.73 -104.68 -0.60 -2.38 16 6 C 0.18 1.85 6.62 -82.43 -0.55 1.31 16 7 N -0.52 -5.82 10.22 -7.19 -0.07 -5.89 16 8 C -0.07 -0.52 5.96 -28.10 -0.17 -0.69 16 9 C -0.13 -0.93 5.45 -26.66 -0.15 -1.07 16 10 C 0.17 1.70 2.51 -67.86 -0.17 1.53 16 11 H 0.09 1.19 7.50 -51.93 -0.39 0.80 16 12 N -0.75 -8.90 5.00 -58.61 -0.29 -9.20 16 13 C 0.71 11.78 8.26 -86.92 -0.72 11.06 16 14 O -0.60 -12.12 15.41 5.29 0.08 -12.04 16 15 N -0.62 -10.61 2.98 -178.76 -0.53 -11.15 16 16 C 0.13 2.48 6.41 -3.93 -0.03 2.45 16 17 C -0.12 -2.82 5.14 -26.83 -0.14 -2.96 16 18 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 19 C -0.51 -13.46 8.56 -34.44 -0.29 -13.75 16 20 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 21 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 22 N -0.89 -24.47 11.30 55.43 0.63 -23.85 16 23 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.12 -2.29 5.30 -26.61 -0.14 -2.43 16 28 C 0.11 1.69 6.39 -3.71 -0.02 1.67 16 29 C -0.09 -0.82 5.30 -28.14 -0.15 -0.97 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 38 H 0.40 3.83 6.09 -40.82 -0.25 3.59 16 39 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 2.64 6.03 -51.93 -0.31 2.33 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.67 5.65 -51.93 -0.29 0.38 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -31.89 392.46 -11.74 -43.63 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.91 Total: 3.30 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.42 Total: -0.46 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.38 Total: -56.07 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.89 -11.74 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542895492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.830 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds