Wall clock time and date at job start Wed Apr 1 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31821 * 119.16466 * 2 1 4 4 C 1.32183 * 120.64201 * 179.85664 * 3 2 1 5 5 C 1.39024 * 119.27761 * 0.04334 * 4 3 2 6 6 C 1.37767 * 118.45977 * 0.14730 * 5 4 3 7 7 N 1.31607 * 119.16979 * 179.97438 * 2 1 3 8 8 C 1.50444 * 122.58453 * 179.63121 * 6 5 4 9 9 C 1.52824 * 110.44064 * 17.58443 * 8 6 5 10 10 C 1.53308 * 108.50078 * 308.96445 * 9 8 6 11 11 H 1.08996 * 109.80144 * 310.02368 * 10 9 8 12 12 N 1.46501 * 109.63360 * 189.52081 * 10 9 8 13 13 C 1.34779 * 119.99792 * 156.28384 * 12 10 9 14 14 O 1.21586 * 120.00263 * 354.79835 * 13 12 10 15 15 N 1.34775 * 119.99585 * 174.79472 * 13 12 10 16 16 C 1.46935 * 120.62794 * 184.94361 * 15 13 12 17 17 C 1.52764 * 109.00763 * 233.58719 * 16 15 13 18 18 C 1.53042 * 109.38022 * 305.58757 * 17 16 15 19 19 C 1.50701 * 109.45465 * 181.26036 * 18 17 16 20 20 H 1.08001 * 120.00262 * 239.92618 * 19 18 17 21 21 C 1.37882 * 120.00152 * 59.93559 * 19 18 17 22 22 N 1.31516 * 119.99770 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46945 * 89.99759 * 23 21 19 25 25 H 1.48499 * 109.47313 * 210.00099 * 23 21 19 26 26 H 1.48499 * 109.46840 * 329.99677 * 23 21 19 27 27 C 1.53037 * 109.53810 * 61.24339 * 18 17 16 28 28 C 1.46923 * 120.63669 * 5.22565 * 15 13 12 29 29 C 1.50343 * 118.73135 * 180.16587 * 5 4 3 30 30 H 1.08997 * 109.47382 * 270.02471 * 1 2 3 31 31 H 1.09007 * 109.47123 * 30.02420 * 1 2 3 32 32 H 1.08999 * 109.47181 * 150.01753 * 1 2 3 33 33 H 1.08006 * 120.36593 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.31035 * 137.89002 * 8 6 5 35 35 H 1.09006 * 109.30788 * 257.29458 * 8 6 5 36 36 H 1.09006 * 109.62518 * 189.26022 * 9 8 6 37 37 H 1.09000 * 109.63947 * 68.67122 * 9 8 6 38 38 H 0.97004 * 120.00175 * 336.01252 * 12 10 9 39 39 H 1.09004 * 109.58406 * 353.41979 * 16 15 13 40 40 H 1.08991 * 109.58243 * 113.84674 * 16 15 13 41 41 H 1.08994 * 109.56425 * 185.55201 * 17 16 15 42 42 H 1.08999 * 109.38429 * 65.51592 * 17 16 15 43 43 H 1.08999 * 109.45796 * 301.22040 * 18 17 16 44 44 H 0.96998 * 119.99896 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.49692 * 178.67896 * 27 18 17 46 46 H 1.08998 * 109.52373 * 58.60126 * 27 18 17 47 47 H 1.08995 * 109.58741 * 246.15652 * 28 15 13 48 48 H 1.09004 * 109.58229 * 6.57857 * 28 15 13 49 49 H 1.08999 * 109.30714 * 77.04639 * 29 5 4 50 50 H 1.08998 * 109.14501 * 317.54371 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1493 1.1511 0.0000 4 6 3.4707 1.1852 0.0028 5 6 4.1816 -0.0095 0.0049 6 6 3.4765 -1.1931 0.0008 7 7 2.1484 -1.1492 0.0005 8 6 4.1509 -2.5379 -0.0055 9 6 5.6109 -2.4049 0.4260 10 6 6.2679 -1.3032 -0.4136 11 1 6.0638 -1.4733 -1.4707 12 7 7.7149 -1.3068 -0.1849 13 6 8.5454 -0.7952 -1.1150 14 8 8.1035 -0.4173 -2.1828 15 7 9.8658 -0.7024 -0.8613 16 6 10.7681 -0.0491 -1.8195 17 6 11.9118 -1.0041 -2.1566 18 6 12.5911 -1.4596 -0.8631 19 6 13.7392 -2.3775 -1.1954 20 1 13.7468 -3.3903 -0.8205 21 6 14.7799 -1.9243 -1.9780 22 7 14.7705 -0.6911 -2.4349 23 14 16.2034 -3.0618 -2.3894 24 1 15.9048 -3.7938 -3.6464 25 1 17.4419 -2.2615 -2.5649 26 1 16.3952 -4.0344 -1.2838 27 6 11.5797 -2.2042 0.0113 28 6 10.4314 -1.2579 0.3757 29 6 5.6841 0.0435 0.0120 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5136 33 1 3.9925 2.1308 0.0032 34 1 3.6311 -3.2051 0.6821 35 1 4.1090 -2.9573 -1.0108 36 1 6.1290 -3.3496 0.2607 37 1 5.6580 -2.1380 1.4818 38 1 8.0751 -1.6739 0.6376 39 1 10.2194 0.1971 -2.7286 40 1 11.1738 0.8607 -1.3773 41 1 12.6384 -0.4944 -2.7892 42 1 11.5152 -1.8715 -2.6843 43 1 12.9661 -0.5897 -0.3241 44 1 15.5025 -0.3724 -2.9858 45 1 12.0700 -2.5487 0.9219 46 1 11.1857 -3.0606 -0.5360 47 1 10.8091 -0.4486 1.0005 48 1 9.6607 -1.8090 0.9145 49 1 6.0315 0.2857 1.0164 50 1 6.0178 0.8161 -0.6808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542895492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:16 Heat of formation + Delta-G solvation = -13.440820 kcal Electronic energy + Delta-G solvation = -29975.881170 eV Core-core repulsion = 26001.481692 eV Total energy + Delta-G solvation = -3974.399477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.44471 -41.37890 -39.05337 -37.98479 -35.51777 -35.28182 -34.79518 -33.02272 -32.45443 -31.74761 -31.17576 -28.64617 -27.72656 -25.79442 -24.86654 -24.12169 -23.93651 -23.40067 -21.68429 -21.20568 -20.24955 -19.12684 -18.75526 -18.29061 -17.50855 -17.18810 -16.66026 -16.53045 -16.36308 -15.74692 -15.35924 -15.22207 -15.06633 -14.91003 -14.72326 -14.55561 -14.34173 -14.21644 -14.09663 -14.01588 -13.71651 -13.38498 -13.27085 -13.03670 -12.96197 -12.90644 -12.80391 -12.45775 -12.16367 -12.11361 -12.04329 -11.94050 -11.81404 -11.40424 -11.37719 -11.26150 -10.90749 -10.76507 -10.39988 -10.39027 -10.11299 -10.02197 -9.36615 -8.06080 -6.19693 -0.14239 0.01410 1.41673 1.43738 1.52229 1.68877 2.17155 2.44827 2.64329 2.86946 2.96190 3.12055 3.20667 3.44689 3.63482 3.67731 3.83388 4.08465 4.13275 4.24845 4.27638 4.33642 4.37807 4.39307 4.45538 4.52992 4.58912 4.64639 4.70632 4.75635 4.79167 4.82981 4.87908 4.93951 4.97116 5.01761 5.09155 5.15223 5.18076 5.22364 5.27511 5.47620 5.50055 5.53958 5.56973 5.68155 5.98241 6.01032 6.11182 6.15307 6.40635 6.92336 7.05304 7.06884 7.48404 7.61079 8.97103 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.034113 B = 0.001938 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.614594 B =14441.709310 C =14803.891138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.294 3.706 3 N -0.540 5.540 4 C 0.146 3.854 5 C -0.184 4.184 6 C 0.172 3.828 7 N -0.536 5.536 8 C -0.064 4.064 9 C -0.115 4.115 10 C 0.163 3.837 11 H 0.066 0.934 12 N -0.726 5.726 13 C 0.703 3.297 14 O -0.639 6.639 15 N -0.621 5.621 16 C 0.140 3.860 17 C -0.112 4.112 18 C 0.045 3.955 19 C -0.531 4.531 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.915 5.915 23 Si 0.949 3.051 24 H -0.282 1.282 25 H -0.285 1.285 26 H -0.267 1.267 27 C -0.117 4.117 28 C 0.118 3.882 29 C -0.075 4.075 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.186 0.814 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.411 0.589 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.018 0.982 43 H 0.004 0.996 44 H 0.259 0.741 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.273 -1.030 11.037 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.027 3.973 3 N -0.255 5.255 4 C -0.021 4.021 5 C -0.188 4.188 6 C 0.028 3.972 7 N -0.251 5.251 8 C -0.102 4.102 9 C -0.153 4.153 10 C 0.058 3.942 11 H 0.085 0.915 12 N -0.384 5.384 13 C 0.405 3.595 14 O -0.521 6.521 15 N -0.357 5.357 16 C 0.016 3.984 17 C -0.151 4.151 18 C 0.026 3.974 19 C -0.569 4.569 20 H 0.071 0.929 21 C -0.186 4.186 22 N -0.555 5.555 23 Si 0.775 3.225 24 H -0.208 1.208 25 H -0.211 1.211 26 H -0.191 1.191 27 C -0.155 4.155 28 C -0.004 4.004 29 C -0.115 4.115 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.203 0.797 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.251 0.749 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.023 0.977 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.124 0.876 49 H 0.120 0.880 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.485 -0.645 10.193 27.455 hybrid contribution 2.346 -0.266 -0.532 2.420 sum -23.139 -0.911 9.661 25.091 Atomic orbital electron populations 1.20642 0.83699 1.04780 1.04804 1.23843 0.99626 0.83322 0.90535 1.68326 1.10416 1.30984 1.15790 1.23683 0.89498 0.99268 0.89605 1.21148 0.98421 0.94871 1.04377 1.21767 0.89176 0.96575 0.89703 1.68292 1.09822 1.30926 1.16056 1.20419 0.94292 0.90874 1.04637 1.21847 0.93723 0.99079 1.00651 1.20759 0.78025 0.95070 1.00362 0.91541 1.45105 1.05738 1.65846 1.21687 1.16019 0.81236 0.78564 0.83672 1.90851 1.76695 1.58232 1.26286 1.47400 1.05040 1.60509 1.22759 1.21302 0.90074 0.94967 0.92043 1.21702 0.95474 0.97110 1.00812 1.18607 0.92202 0.94494 0.92064 1.21607 1.05326 0.98806 1.31193 0.92899 1.25704 1.00566 0.96330 0.96033 1.69977 1.32830 1.16849 1.35834 0.85698 0.79176 0.79122 0.78489 1.20779 1.21108 1.19113 1.21870 0.95887 0.97714 1.00015 1.21825 0.96455 0.97235 0.84924 1.20670 0.88382 0.98922 1.03491 0.88396 0.89069 0.88923 0.79662 0.87027 0.88690 0.88074 0.88715 0.74928 0.91660 0.92121 0.91091 0.96295 0.97740 0.93134 0.90777 0.93638 0.90609 0.87638 0.87971 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.32 71.23 0.74 -0.31 16 2 C 0.29 6.03 7.64 138.80 1.06 7.10 16 3 N -0.54 -11.83 10.34 -187.72 -1.94 -13.77 16 4 C 0.15 2.84 10.93 84.83 0.93 3.77 16 5 C -0.18 -3.45 5.73 -19.90 -0.11 -3.57 16 6 C 0.17 3.26 6.62 42.21 0.28 3.54 16 7 N -0.54 -11.35 10.22 -176.65 -1.80 -13.15 16 8 C -0.06 -0.84 5.96 29.71 0.18 -0.66 16 9 C -0.11 -1.29 5.45 30.64 0.17 -1.12 16 10 C 0.16 3.03 2.51 45.04 0.11 3.14 16 11 H 0.07 1.65 7.50 -2.39 -0.02 1.63 16 12 N -0.73 -15.27 5.00 -457.59 -2.29 -17.56 16 13 C 0.70 22.54 8.26 179.05 1.48 24.02 16 14 O -0.64 -25.91 15.41 -3.99 -0.06 -25.97 16 15 N -0.62 -20.53 2.98 -837.73 -2.50 -23.02 16 16 C 0.14 5.54 6.41 86.22 0.55 6.09 16 17 C -0.11 -5.25 5.14 30.53 0.16 -5.10 16 18 C 0.04 2.09 2.07 -11.51 -0.02 2.07 16 19 C -0.53 -28.03 8.56 25.60 0.22 -27.81 16 20 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 21 C 0.01 0.66 5.30 84.66 0.45 1.11 16 22 N -0.92 -51.62 11.30 21.45 0.24 -51.38 16 23 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C -0.12 -4.11 5.30 30.67 0.16 -3.94 16 28 C 0.12 3.16 6.39 86.36 0.55 3.72 16 29 C -0.08 -1.33 5.30 29.68 0.16 -1.17 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 36 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 38 H 0.41 6.12 6.09 -92.71 -0.56 5.55 16 39 H 0.06 2.73 6.99 -2.38 -0.02 2.71 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 3.79 6.03 -2.39 -0.01 3.78 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.11 1.87 5.65 -2.38 -0.01 1.86 16 49 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.61 392.46 1.11 -70.50 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.39 Total: 18.66 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 7.05 Total: 10.86 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -8.29 Total: -118.88 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.06 Total: -25.97 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.61 1.11 -70.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542895492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.059 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds