Wall clock time and date at job start Wed Apr 1 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31812 * 119.16998 * 2 1 4 4 C 1.32187 * 120.64761 * 179.90561 * 3 2 1 5 5 C 1.39021 * 119.27224 * 0.03615 * 4 3 2 6 6 C 1.37768 * 118.46284 * 0.15171 * 5 4 3 7 7 N 1.31605 * 119.16539 * 180.02562 * 2 1 3 8 8 C 1.50446 * 122.58366 * 179.62984 * 6 5 4 9 9 C 1.52821 * 110.44536 * 17.58556 * 8 6 5 10 10 C 1.53308 * 108.49702 * 308.96784 * 9 8 6 11 11 H 1.09002 * 109.80370 * 310.01745 * 10 9 8 12 12 N 1.46502 * 109.63458 * 189.52180 * 10 9 8 13 13 C 1.34772 * 120.00424 * 156.00604 * 12 10 9 14 14 O 1.21582 * 119.99876 * 5.06339 * 13 12 10 15 15 N 1.34774 * 120.00100 * 185.06230 * 13 12 10 16 16 C 1.46933 * 120.63183 * 354.96562 * 15 13 12 17 17 C 1.53192 * 108.89392 * 126.29347 * 16 15 13 18 18 C 1.53351 * 109.14674 * 54.57844 * 17 16 15 19 19 C 1.53036 * 109.61073 * 298.71026 * 18 17 16 20 20 H 1.08999 * 109.52374 * 301.40688 * 19 18 17 21 21 C 1.50702 * 109.50286 * 181.32650 * 19 18 17 22 22 H 1.08005 * 119.99655 * 0.16283 * 21 19 18 23 23 C 1.37876 * 120.00390 * 180.15887 * 21 19 18 24 24 N 1.31516 * 119.99513 * 0.02562 * 23 21 19 25 25 Si 1.86793 * 120.00113 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47155 * 60.00585 * 25 23 21 27 27 H 1.48502 * 109.47300 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47440 * 300.00658 * 25 23 21 29 29 C 1.46927 * 120.63097 * 174.93999 * 15 13 12 30 30 C 1.50342 * 118.72875 * 180.16722 * 5 4 3 31 31 H 1.08997 * 109.47302 * 269.98389 * 1 2 3 32 32 H 1.08998 * 109.46628 * 29.98298 * 1 2 3 33 33 H 1.09004 * 109.47114 * 149.97984 * 1 2 3 34 34 H 1.08000 * 120.36642 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.30574 * 137.89041 * 8 6 5 36 36 H 1.08997 * 109.30920 * 257.29312 * 8 6 5 37 37 H 1.08995 * 109.63144 * 189.26188 * 9 8 6 38 38 H 1.09003 * 109.64026 * 68.66529 * 9 8 6 39 39 H 0.97004 * 119.99408 * 336.00137 * 12 10 9 40 40 H 1.09000 * 109.58192 * 246.15629 * 16 15 13 41 41 H 1.08994 * 109.58376 * 6.43700 * 16 15 13 42 42 H 1.08997 * 109.49597 * 174.65880 * 17 16 15 43 43 H 1.09002 * 109.49625 * 294.75554 * 17 16 15 44 44 H 1.09007 * 109.41903 * 178.67498 * 18 17 16 45 45 H 1.08998 * 109.42547 * 58.74971 * 18 17 16 46 46 H 0.97005 * 119.99255 * 179.97438 * 24 23 21 47 47 H 1.09000 * 109.58617 * 353.41967 * 29 15 13 48 48 H 1.08998 * 109.58967 * 113.70591 * 29 15 13 49 49 H 1.09003 * 109.30807 * 77.04881 * 30 5 4 50 50 H 1.08998 * 109.15109 * 317.54408 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1509 0.0000 4 6 3.4709 1.1850 0.0019 5 6 4.1817 -0.0097 0.0031 6 6 3.4765 -1.1932 -0.0009 7 7 2.1483 -1.1492 -0.0005 8 6 4.1508 -2.5381 -0.0082 9 6 5.6111 -2.4054 0.4223 10 6 6.2675 -1.3034 -0.4173 11 1 6.0628 -1.4731 -1.4744 12 7 7.7148 -1.3072 -0.1897 13 6 8.5450 -0.8003 -1.1225 14 8 8.0901 -0.2571 -2.1106 15 7 9.8795 -0.8955 -0.9601 16 6 10.4455 -1.4494 0.2776 17 6 11.4090 -2.5847 -0.0821 18 6 12.4537 -2.0619 -1.0756 19 6 11.7567 -1.5928 -2.3546 20 1 11.1971 -2.4211 -2.7893 21 6 12.7881 -1.1100 -3.3416 22 1 13.8366 -1.1374 -3.0838 23 6 12.3933 -0.6332 -4.5736 24 7 11.1166 -0.5994 -4.8873 25 14 13.6718 -0.0341 -5.7967 26 1 14.6029 -1.1439 -6.1231 27 1 12.9944 0.4250 -7.0359 28 1 14.4344 1.0935 -5.2032 29 6 10.7962 -0.4479 -2.0175 30 6 5.6841 0.0433 0.0091 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3632 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 3.9926 2.1306 0.0023 35 1 3.6314 -3.2054 0.6796 36 1 4.1083 -2.9572 -1.0135 37 1 6.1291 -3.3499 0.2564 38 1 5.6590 -2.1388 1.4782 39 1 8.0754 -1.6745 0.6325 40 1 10.9846 -0.6686 0.8142 41 1 9.6427 -1.8365 0.9051 42 1 11.9061 -2.9397 0.8206 43 1 10.8523 -3.4037 -0.5375 44 1 13.1560 -2.8601 -1.3165 45 1 12.9929 -1.2266 -0.6286 46 1 10.8388 -0.2637 -5.7540 47 1 10.2251 -0.1766 -2.9054 48 1 11.3622 0.4159 -1.6690 49 1 6.0323 0.2851 1.0133 50 1 6.0174 0.8160 -0.6836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596114617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:28 Heat of formation + Delta-G solvation = 6.667176 kcal Electronic energy + Delta-G solvation = -30342.815165 eV Core-core repulsion = 26369.287636 eV Total energy + Delta-G solvation = -3973.527529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57643 -39.86641 -37.84456 -36.51126 -34.40475 -33.91581 -33.22873 -31.90132 -31.43718 -30.52441 -29.69902 -27.64141 -25.07721 -24.98869 -24.44461 -23.14257 -22.67054 -21.83898 -20.26000 -20.09658 -18.74733 -18.05919 -17.46730 -16.44200 -16.37344 -16.09403 -15.43900 -15.12933 -14.59042 -14.44277 -14.33631 -14.09348 -13.92301 -13.74296 -13.57751 -13.49350 -13.28699 -13.04914 -12.70631 -12.64607 -12.57906 -12.36848 -12.25226 -11.99151 -11.93446 -11.30841 -11.18736 -10.98052 -10.96047 -10.88426 -10.54963 -10.53077 -10.40518 -10.23255 -9.89081 -9.48696 -9.41024 -9.20686 -9.11623 -8.96579 -8.81078 -8.42124 -7.66876 -5.98823 -4.07765 0.71923 0.87341 3.10454 3.32646 3.38478 3.39524 3.49500 3.66013 3.78946 3.90223 4.21712 4.31574 4.44189 4.50982 4.52222 4.70539 4.90940 4.99717 5.14828 5.16457 5.24664 5.26952 5.28697 5.30638 5.31339 5.47596 5.52777 5.56126 5.58978 5.61093 5.67974 5.85844 5.94260 5.98475 6.03890 6.13804 6.28882 6.29398 6.57107 6.64431 6.74322 6.79447 6.85195 6.97407 7.05056 7.32712 7.48016 7.73773 7.92181 7.92586 8.05825 8.40515 8.55981 8.95475 9.22159 9.57778 11.06232 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.002378 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.141412 B =11773.196430 C =12741.623516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.306 3.694 3 N -0.521 5.521 4 C 0.154 3.846 5 C -0.175 4.175 6 C 0.180 3.820 7 N -0.520 5.520 8 C -0.067 4.067 9 C -0.127 4.127 10 C 0.167 3.833 11 H 0.092 0.908 12 N -0.752 5.752 13 C 0.701 3.299 14 O -0.582 6.582 15 N -0.622 5.622 16 C 0.115 3.885 17 C -0.134 4.134 18 C -0.110 4.110 19 C 0.040 3.960 20 H 0.028 0.972 21 C -0.522 4.522 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.879 5.879 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.129 3.871 30 C -0.086 4.086 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.391 0.609 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.264 0.736 47 H 0.123 0.877 48 H 0.039 0.961 49 H 0.082 0.918 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.081 -2.560 15.626 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 N -0.235 5.235 4 C -0.013 4.013 5 C -0.180 4.180 6 C 0.036 3.964 7 N -0.235 5.235 8 C -0.105 4.105 9 C -0.165 4.165 10 C 0.061 3.939 11 H 0.110 0.890 12 N -0.411 5.411 13 C 0.403 3.597 14 O -0.459 6.459 15 N -0.358 5.358 16 C -0.009 4.009 17 C -0.172 4.172 18 C -0.147 4.147 19 C 0.021 3.979 20 H 0.046 0.954 21 C -0.561 4.561 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.517 5.517 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 C 0.008 3.992 30 C -0.125 4.125 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.186 0.814 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.228 0.772 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.141 0.859 48 H 0.057 0.943 49 H 0.100 0.900 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.531 -2.107 14.693 22.217 hybrid contribution 1.847 0.271 -0.222 1.879 sum -14.684 -1.837 14.471 20.698 Atomic orbital electron populations 1.20525 0.85835 1.04070 1.03658 1.23163 0.98115 0.83484 0.91341 1.68247 1.09889 1.30548 1.14861 1.23309 0.89463 0.98328 0.90186 1.21148 0.98543 0.94719 1.03566 1.21321 0.89121 0.95518 0.90452 1.68199 1.09356 1.30697 1.15252 1.20349 0.94141 0.91880 1.04136 1.21889 0.94526 0.99858 1.00239 1.20620 0.79270 0.93137 1.00864 0.89014 1.45355 1.05483 1.68043 1.22196 1.15952 0.81439 0.79543 0.82798 1.90924 1.75505 1.48870 1.30600 1.47797 1.03858 1.65155 1.19007 1.21491 0.96382 0.96232 0.86778 1.22004 0.98110 0.97589 0.99508 1.21667 0.96727 0.99520 0.96817 1.18976 0.93676 0.94297 0.90968 0.95396 1.21032 0.92805 1.43226 0.98988 0.92450 1.25053 0.95256 0.95560 0.98152 1.69882 1.14088 1.45539 1.22163 0.86659 0.81553 0.79160 0.80628 1.20311 1.21275 1.20252 1.22190 0.90870 0.96918 0.89191 1.20816 0.88402 1.00322 1.03006 0.89850 0.89727 0.89737 0.81395 0.88728 0.88672 0.89560 0.90864 0.77249 0.92163 0.92176 0.92330 0.92181 0.93097 0.93210 0.92604 0.85944 0.94304 0.89955 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.32 36.01 0.37 -0.28 16 2 C 0.31 3.59 7.64 -157.34 -1.20 2.39 16 3 N -0.52 -6.44 10.34 -10.69 -0.11 -6.55 16 4 C 0.15 1.76 10.93 -17.11 -0.19 1.57 16 5 C -0.18 -1.99 5.73 -104.68 -0.60 -2.59 16 6 C 0.18 2.06 6.62 -82.43 -0.55 1.51 16 7 N -0.52 -6.34 10.22 -7.19 -0.07 -6.42 16 8 C -0.07 -0.59 5.96 -28.10 -0.17 -0.76 16 9 C -0.13 -1.06 5.45 -26.66 -0.15 -1.21 16 10 C 0.17 2.00 2.43 -67.86 -0.17 1.84 16 11 H 0.09 1.36 7.64 -51.93 -0.40 0.97 16 12 N -0.75 -10.15 5.01 -58.61 -0.29 -10.44 16 13 C 0.70 13.50 8.26 -86.92 -0.72 12.78 16 14 O -0.58 -13.93 15.51 5.29 0.08 -13.84 16 15 N -0.62 -12.00 2.97 -178.49 -0.53 -12.53 16 16 C 0.12 1.67 6.42 -3.71 -0.02 1.65 16 17 C -0.13 -2.03 6.11 -26.45 -0.16 -2.19 16 18 C -0.11 -2.11 5.11 -26.53 -0.14 -2.25 16 19 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.52 -13.99 8.56 -34.44 -0.29 -14.28 16 22 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 23 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 24 N -0.88 -25.56 11.39 55.43 0.63 -24.93 16 25 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 29 C 0.13 3.08 5.39 -3.71 -0.02 3.06 16 30 C -0.09 -0.97 5.30 -28.14 -0.15 -1.12 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 39 H 0.39 4.15 6.06 -40.82 -0.25 3.90 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.66 5.56 -51.93 -0.29 0.37 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.12 3.45 5.15 -51.93 -0.27 3.19 16 48 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -33.40 392.84 -11.77 -45.16 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.93 Total: 4.96 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -4.45 Total: 2.50 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.38 Total: -60.87 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.40 -11.77 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596114617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.831 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds