Wall clock time and date at job start Wed Apr 1 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31812 * 119.16998 * 2 1 4 4 C 1.32187 * 120.64761 * 179.90561 * 3 2 1 5 5 C 1.39021 * 119.27224 * 0.03615 * 4 3 2 6 6 C 1.37768 * 118.46284 * 0.15171 * 5 4 3 7 7 N 1.31605 * 119.16539 * 180.02562 * 2 1 3 8 8 C 1.50446 * 122.58366 * 179.62984 * 6 5 4 9 9 C 1.52821 * 110.44536 * 17.58556 * 8 6 5 10 10 C 1.53308 * 108.49702 * 308.96784 * 9 8 6 11 11 H 1.09002 * 109.80370 * 310.01745 * 10 9 8 12 12 N 1.46502 * 109.63458 * 189.52180 * 10 9 8 13 13 C 1.34772 * 120.00424 * 156.00604 * 12 10 9 14 14 O 1.21582 * 119.99876 * 5.06339 * 13 12 10 15 15 N 1.34774 * 120.00100 * 185.06230 * 13 12 10 16 16 C 1.46933 * 120.63183 * 354.96562 * 15 13 12 17 17 C 1.53192 * 108.89392 * 126.29347 * 16 15 13 18 18 C 1.53351 * 109.14674 * 54.57844 * 17 16 15 19 19 C 1.53036 * 109.61073 * 298.71026 * 18 17 16 20 20 H 1.08999 * 109.52374 * 301.40688 * 19 18 17 21 21 C 1.50702 * 109.50286 * 181.32650 * 19 18 17 22 22 H 1.08005 * 119.99655 * 0.16283 * 21 19 18 23 23 C 1.37876 * 120.00390 * 180.15887 * 21 19 18 24 24 N 1.31516 * 119.99513 * 0.02562 * 23 21 19 25 25 Si 1.86793 * 120.00113 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47155 * 60.00585 * 25 23 21 27 27 H 1.48502 * 109.47300 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47440 * 300.00658 * 25 23 21 29 29 C 1.46927 * 120.63097 * 174.93999 * 15 13 12 30 30 C 1.50342 * 118.72875 * 180.16722 * 5 4 3 31 31 H 1.08997 * 109.47302 * 269.98389 * 1 2 3 32 32 H 1.08998 * 109.46628 * 29.98298 * 1 2 3 33 33 H 1.09004 * 109.47114 * 149.97984 * 1 2 3 34 34 H 1.08000 * 120.36642 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.30574 * 137.89041 * 8 6 5 36 36 H 1.08997 * 109.30920 * 257.29312 * 8 6 5 37 37 H 1.08995 * 109.63144 * 189.26188 * 9 8 6 38 38 H 1.09003 * 109.64026 * 68.66529 * 9 8 6 39 39 H 0.97004 * 119.99408 * 336.00137 * 12 10 9 40 40 H 1.09000 * 109.58192 * 246.15629 * 16 15 13 41 41 H 1.08994 * 109.58376 * 6.43700 * 16 15 13 42 42 H 1.08997 * 109.49597 * 174.65880 * 17 16 15 43 43 H 1.09002 * 109.49625 * 294.75554 * 17 16 15 44 44 H 1.09007 * 109.41903 * 178.67498 * 18 17 16 45 45 H 1.08998 * 109.42547 * 58.74971 * 18 17 16 46 46 H 0.97005 * 119.99255 * 179.97438 * 24 23 21 47 47 H 1.09000 * 109.58617 * 353.41967 * 29 15 13 48 48 H 1.08998 * 109.58967 * 113.70591 * 29 15 13 49 49 H 1.09003 * 109.30807 * 77.04881 * 30 5 4 50 50 H 1.08998 * 109.15109 * 317.54408 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1509 0.0000 4 6 3.4709 1.1850 0.0019 5 6 4.1817 -0.0097 0.0031 6 6 3.4765 -1.1932 -0.0009 7 7 2.1483 -1.1492 -0.0005 8 6 4.1508 -2.5381 -0.0082 9 6 5.6111 -2.4054 0.4223 10 6 6.2675 -1.3034 -0.4173 11 1 6.0628 -1.4731 -1.4744 12 7 7.7148 -1.3072 -0.1897 13 6 8.5450 -0.8003 -1.1225 14 8 8.0901 -0.2571 -2.1106 15 7 9.8795 -0.8955 -0.9601 16 6 10.4455 -1.4494 0.2776 17 6 11.4090 -2.5847 -0.0821 18 6 12.4537 -2.0619 -1.0756 19 6 11.7567 -1.5928 -2.3546 20 1 11.1971 -2.4211 -2.7893 21 6 12.7881 -1.1100 -3.3416 22 1 13.8366 -1.1374 -3.0838 23 6 12.3933 -0.6332 -4.5736 24 7 11.1166 -0.5994 -4.8873 25 14 13.6718 -0.0341 -5.7967 26 1 14.6029 -1.1439 -6.1231 27 1 12.9944 0.4250 -7.0359 28 1 14.4344 1.0935 -5.2032 29 6 10.7962 -0.4479 -2.0175 30 6 5.6841 0.0433 0.0091 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3632 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 3.9926 2.1306 0.0023 35 1 3.6314 -3.2054 0.6796 36 1 4.1083 -2.9572 -1.0135 37 1 6.1291 -3.3499 0.2564 38 1 5.6590 -2.1388 1.4782 39 1 8.0754 -1.6745 0.6325 40 1 10.9846 -0.6686 0.8142 41 1 9.6427 -1.8365 0.9051 42 1 11.9061 -2.9397 0.8206 43 1 10.8523 -3.4037 -0.5375 44 1 13.1560 -2.8601 -1.3165 45 1 12.9929 -1.2266 -0.6286 46 1 10.8388 -0.2637 -5.7540 47 1 10.2251 -0.1766 -2.9054 48 1 11.3622 0.4159 -1.6690 49 1 6.0323 0.2851 1.0133 50 1 6.0174 0.8160 -0.6836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596114617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:27 Heat of formation + Delta-G solvation = -14.436226 kcal Electronic energy + Delta-G solvation = -30343.730277 eV Core-core repulsion = 26369.287636 eV Total energy + Delta-G solvation = -3974.442641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44665 -41.28642 -39.01714 -37.91649 -35.55671 -35.21182 -34.69437 -33.41288 -32.42239 -31.56097 -31.22867 -28.57488 -26.97316 -26.04197 -25.69063 -24.00368 -23.69926 -23.36684 -21.64237 -21.20063 -20.20984 -19.09587 -18.80618 -18.16137 -17.47522 -17.19248 -16.68387 -16.37767 -16.31519 -15.71816 -15.39955 -15.14611 -15.11798 -15.05447 -14.75427 -14.45298 -14.34181 -14.23298 -14.13746 -13.91476 -13.71779 -13.51168 -13.28141 -13.03436 -12.91018 -12.84598 -12.66955 -12.26583 -12.24762 -12.11704 -12.06520 -11.90833 -11.74441 -11.60274 -11.38192 -11.18228 -10.92896 -10.79724 -10.49547 -10.38504 -10.10437 -10.01133 -9.22901 -8.09237 -6.26093 -0.14860 -0.00042 1.41198 1.42559 1.50847 1.77567 2.29555 2.42591 2.63439 2.88747 3.02780 3.11322 3.20809 3.44283 3.63916 3.67429 3.82888 4.06176 4.11322 4.20887 4.24367 4.31636 4.34228 4.38210 4.44737 4.59140 4.64351 4.70460 4.75697 4.78865 4.81269 4.84200 4.86881 4.89431 4.97179 5.08550 5.13862 5.15623 5.17365 5.29841 5.32448 5.37577 5.47621 5.57577 5.60536 5.68630 5.92654 5.96990 6.00570 6.21708 6.38603 6.87091 7.05722 7.19674 7.43787 7.74166 8.93536 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.002378 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.141412 B =11773.196430 C =12741.623516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.293 3.707 3 N -0.539 5.539 4 C 0.145 3.855 5 C -0.184 4.184 6 C 0.172 3.828 7 N -0.533 5.533 8 C -0.064 4.064 9 C -0.112 4.112 10 C 0.164 3.836 11 H 0.055 0.945 12 N -0.725 5.725 13 C 0.695 3.305 14 O -0.639 6.639 15 N -0.627 5.627 16 C 0.109 3.891 17 C -0.125 4.125 18 C -0.105 4.105 19 C 0.039 3.961 20 H -0.014 1.014 21 C -0.536 4.536 22 H 0.062 0.938 23 C 0.009 3.991 24 N -0.915 5.915 25 Si 0.956 3.044 26 H -0.268 1.268 27 H -0.291 1.291 28 H -0.267 1.267 29 C 0.144 3.856 30 C -0.074 4.074 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.184 0.816 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.411 0.589 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.258 0.742 47 H 0.074 0.926 48 H 0.031 0.969 49 H 0.104 0.896 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.840 -3.760 18.850 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.026 3.974 3 N -0.254 5.254 4 C -0.021 4.021 5 C -0.189 4.189 6 C 0.028 3.972 7 N -0.249 5.249 8 C -0.102 4.102 9 C -0.150 4.150 10 C 0.059 3.941 11 H 0.074 0.926 12 N -0.384 5.384 13 C 0.397 3.603 14 O -0.520 6.520 15 N -0.363 5.363 16 C -0.013 4.013 17 C -0.163 4.163 18 C -0.143 4.143 19 C 0.020 3.980 20 H 0.004 0.996 21 C -0.574 4.574 22 H 0.080 0.920 23 C -0.190 4.190 24 N -0.553 5.553 25 Si 0.781 3.219 26 H -0.193 1.193 27 H -0.216 1.216 28 H -0.192 1.192 29 C 0.021 3.979 30 C -0.114 4.114 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.201 0.799 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.251 0.749 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.049 0.951 49 H 0.122 0.878 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.282 -3.348 18.001 24.502 hybrid contribution 1.733 0.641 -1.226 2.218 sum -14.549 -2.707 16.774 22.369 Atomic orbital electron populations 1.20640 0.83550 1.04761 1.04868 1.23879 0.99686 0.83314 0.90543 1.68319 1.10255 1.31030 1.15771 1.23652 0.89573 0.99203 0.89703 1.21159 0.98362 0.94998 1.04348 1.21765 0.89225 0.96525 0.89693 1.68294 1.09674 1.30887 1.16011 1.20424 0.94349 0.90871 1.04580 1.21840 0.93645 0.98869 1.00648 1.20726 0.78361 0.95197 0.99860 0.92637 1.45052 1.05514 1.66393 1.21487 1.16195 0.81783 0.79381 0.82983 1.90889 1.76527 1.51302 1.33296 1.47669 1.03572 1.65372 1.19679 1.21872 0.97888 0.96510 0.84994 1.21961 0.97092 0.97302 0.99982 1.21558 0.97599 0.99751 0.95396 1.18905 0.93218 0.92882 0.93043 0.99624 1.21505 0.93626 1.42499 0.99777 0.92010 1.25891 0.96944 0.95930 1.00266 1.70092 1.16162 1.46857 1.22206 0.85646 0.79155 0.79014 0.78079 1.19283 1.21646 1.19201 1.21541 0.90757 0.96547 0.89078 1.20652 0.88476 0.98973 1.03297 0.88241 0.89121 0.88911 0.79877 0.86640 0.88993 0.88000 0.88333 0.74938 0.90439 0.87707 0.87745 0.92993 0.93163 0.92560 0.93261 0.90798 0.95075 0.87813 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.32 71.24 0.74 -0.44 16 2 C 0.29 6.66 7.64 138.80 1.06 7.72 16 3 N -0.54 -13.17 10.34 -187.73 -1.94 -15.11 16 4 C 0.15 3.30 10.93 84.83 0.93 4.23 16 5 C -0.18 -4.11 5.73 -19.90 -0.11 -4.23 16 6 C 0.17 3.75 6.62 42.21 0.28 4.03 16 7 N -0.53 -12.51 10.22 -176.65 -1.80 -14.31 16 8 C -0.06 -1.01 5.96 29.71 0.18 -0.83 16 9 C -0.11 -1.55 5.45 30.64 0.17 -1.38 16 10 C 0.16 3.80 2.43 45.04 0.11 3.91 16 11 H 0.06 1.72 7.64 -2.39 -0.02 1.70 16 12 N -0.73 -18.43 5.01 -457.60 -2.29 -20.72 16 13 C 0.70 27.14 8.26 179.06 1.48 28.62 16 14 O -0.64 -32.46 15.51 -3.97 -0.06 -32.52 16 15 N -0.63 -24.12 2.97 -836.90 -2.49 -26.61 16 16 C 0.11 2.80 6.42 86.36 0.55 3.36 16 17 C -0.13 -3.39 6.11 30.78 0.19 -3.20 16 18 C -0.11 -3.93 5.11 30.72 0.16 -3.77 16 19 C 0.04 1.94 2.25 -11.46 -0.03 1.92 16 20 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 21 C -0.54 -29.42 8.56 25.60 0.22 -29.20 16 22 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 23 C 0.01 0.51 5.30 84.65 0.45 0.96 16 24 N -0.91 -56.07 11.39 21.45 0.24 -55.83 16 25 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 C 0.14 7.14 5.39 86.36 0.47 7.61 16 30 C -0.07 -1.65 5.30 29.68 0.16 -1.49 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 0.95 8.10 -2.39 -0.02 0.93 16 39 H 0.41 7.10 6.06 -92.70 -0.56 6.54 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 1.74 5.56 -2.39 -0.01 1.73 16 42 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 47 H 0.07 4.45 5.15 -2.39 -0.01 4.44 16 48 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -79.92 392.84 1.06 -78.86 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.39 Total: 21.95 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.99 Total: 17.81 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -8.28 Total: -132.59 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.06 Total: -32.52 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -79.92 1.06 -78.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596114617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.426 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds