Wall clock time and date at job start Wed Apr 1 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31823 * 119.15974 * 2 1 4 4 C 1.32183 * 120.63708 * 180.15256 * 3 2 1 5 5 C 1.39017 * 119.27298 * 359.97438 * 4 3 2 6 6 C 1.37764 * 118.47155 * 359.81927 * 5 4 3 7 7 N 1.31597 * 119.16817 * 180.02562 * 2 1 3 8 8 C 1.50452 * 122.58695 * 180.34825 * 6 5 4 9 9 C 1.52808 * 110.45558 * 342.52145 * 8 6 5 10 10 C 1.53307 * 108.52777 * 50.94680 * 9 8 6 11 11 C 1.50343 * 118.71943 * 179.79074 * 5 4 3 12 12 H 1.09000 * 109.15514 * 282.76070 * 11 5 4 13 13 N 1.46500 * 109.31431 * 42.28030 * 11 5 4 14 14 C 1.34773 * 119.99718 * 275.97384 * 13 11 5 15 15 O 1.21590 * 120.00174 * 4.17188 * 14 13 11 16 16 N 1.34779 * 120.00169 * 184.17548 * 14 13 11 17 17 C 1.46937 * 120.60108 * 354.91608 * 16 14 13 18 18 C 1.53187 * 108.77618 * 233.53614 * 17 16 14 19 19 C 1.53041 * 109.33864 * 305.42046 * 18 17 16 20 20 C 1.53038 * 109.54391 * 61.34419 * 19 18 17 21 21 H 1.09011 * 109.49478 * 58.61559 * 20 19 18 22 22 C 1.50698 * 109.50326 * 178.68155 * 20 19 18 23 23 H 1.08002 * 119.99638 * 5.41245 * 22 20 19 24 24 C 1.37869 * 120.00122 * 185.40166 * 22 20 19 25 25 N 1.31519 * 120.00153 * 9.65094 * 24 22 20 26 26 Si 1.86808 * 120.00109 * 189.64292 * 24 22 20 27 27 H 1.48495 * 109.46921 * 94.99154 * 26 24 22 28 28 H 1.48499 * 109.47280 * 214.99628 * 26 24 22 29 29 H 1.48501 * 109.46781 * 334.99659 * 26 24 22 30 30 C 1.46926 * 120.63555 * 174.90262 * 16 14 13 31 31 H 1.09009 * 109.47329 * 90.00395 * 1 2 3 32 32 H 1.09004 * 109.46766 * 209.99673 * 1 2 3 33 33 H 1.08995 * 109.47877 * 329.99685 * 1 2 3 34 34 H 1.08007 * 120.35908 * 179.97438 * 4 3 2 35 35 H 1.08990 * 109.30535 * 222.21450 * 8 6 5 36 36 H 1.08995 * 109.13942 * 102.71578 * 8 6 5 37 37 H 1.09002 * 109.62798 * 291.23240 * 9 8 6 38 38 H 1.09002 * 109.62670 * 170.65944 * 9 8 6 39 39 H 1.08997 * 109.64293 * 170.47928 * 10 9 8 40 40 H 1.09004 * 109.63691 * 49.86154 * 10 9 8 41 41 H 0.97004 * 120.00326 * 95.96973 * 13 11 5 42 42 H 1.08999 * 109.55664 * 113.76939 * 17 16 14 43 43 H 1.09000 * 109.61761 * 353.34676 * 17 16 14 44 44 H 1.08996 * 109.50227 * 185.45312 * 18 17 16 45 45 H 1.09004 * 109.49856 * 65.38375 * 18 17 16 46 46 H 1.09003 * 109.45950 * 181.36863 * 19 18 17 47 47 H 1.09007 * 109.45694 * 301.32539 * 19 18 17 48 48 H 0.96999 * 119.99706 * 179.97438 * 25 24 22 49 49 H 1.09004 * 109.58175 * 6.63763 * 30 16 14 50 50 H 1.09001 * 109.70006 * 246.28899 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1493 1.1512 0.0000 4 6 3.4707 1.1852 -0.0030 5 6 4.1814 -0.0095 -0.0057 6 6 3.4765 -1.1931 -0.0012 7 7 2.1483 -1.1491 -0.0005 8 6 4.1510 -2.5379 0.0041 9 6 5.6112 -2.4047 -0.4261 10 6 6.2678 -1.3026 0.4132 11 6 5.6839 0.0438 -0.0139 12 1 6.0278 0.2828 -1.0203 13 7 6.1370 1.0842 0.9127 14 6 6.1975 2.3680 0.5070 15 8 5.8048 2.6742 -0.6023 16 7 6.6934 3.3124 1.3308 17 6 7.0682 2.9785 2.7118 18 6 6.3516 3.9413 3.6637 19 6 6.6658 5.3830 3.2575 20 6 6.1546 5.6378 1.8377 21 1 5.0806 5.4548 1.7994 22 6 6.4355 7.0669 1.4507 23 1 7.0059 7.7031 2.1113 24 6 5.9645 7.5622 0.2534 25 7 5.1154 6.8568 -0.4617 26 14 6.5321 9.2354 -0.3533 27 1 7.6779 9.0626 -1.2819 28 1 5.4158 9.9090 -1.0643 29 1 6.9538 10.0646 0.8042 30 6 6.8695 4.6947 0.8650 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3635 0.8899 0.5138 34 1 3.9923 2.1310 -0.0034 35 1 3.6317 -3.2042 -0.6846 36 1 4.1084 -2.9551 1.0102 37 1 5.6589 -2.1384 -1.4821 38 1 6.1294 -3.3492 -0.2601 39 1 7.3445 -1.3053 0.2437 40 1 6.0597 -1.4735 1.4695 41 1 6.3933 0.8491 1.8182 42 1 8.1466 3.0809 2.8320 43 1 6.7692 1.9542 2.9346 44 1 6.6951 3.7677 4.6834 45 1 5.2759 3.7741 3.6086 46 1 6.1765 6.0697 3.9483 47 1 7.7436 5.5426 3.2895 48 1 4.7838 7.2055 -1.3039 49 1 6.4396 4.8022 -0.1309 50 1 7.9313 4.9391 0.8329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853750309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:02 Heat of formation + Delta-G solvation = 11.466399 kcal Electronic energy + Delta-G solvation = -31371.876459 eV Core-core repulsion = 27398.557040 eV Total energy + Delta-G solvation = -3973.319419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46774 -39.86656 -37.76796 -36.72897 -34.56411 -33.58024 -32.78443 -32.29062 -31.75022 -29.99406 -29.18520 -28.15956 -25.10691 -24.96591 -24.24179 -22.98217 -22.46732 -21.87858 -20.22276 -20.09343 -18.85207 -17.89470 -17.41443 -16.61814 -16.19683 -16.14969 -15.59333 -15.07376 -14.68710 -14.41513 -14.26276 -13.96103 -13.87983 -13.78593 -13.59370 -13.49687 -13.05424 -12.82448 -12.67336 -12.60738 -12.41310 -12.17802 -12.03701 -11.89907 -11.75864 -11.56888 -11.20345 -11.00354 -10.94379 -10.70190 -10.55687 -10.43141 -10.32311 -10.25782 -9.90442 -9.63063 -9.17093 -9.07445 -9.01833 -9.01394 -8.91033 -8.37248 -7.76605 -5.99773 -4.04812 0.95446 1.21075 3.03581 3.32981 3.40793 3.42416 3.59356 3.81670 3.85636 4.21136 4.22459 4.40733 4.45819 4.50517 4.66713 4.75970 4.88064 5.13358 5.19081 5.24261 5.29800 5.31624 5.37509 5.43840 5.50694 5.51643 5.54877 5.57316 5.61826 5.71715 5.79726 5.89313 5.90147 5.94875 6.12062 6.14271 6.27975 6.50806 6.61165 6.61301 6.64169 6.76678 6.93299 6.95859 7.14085 7.21050 7.40554 7.71084 7.87408 7.99886 8.24613 8.38374 8.43376 8.98626 9.05737 9.59571 11.07702 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.003281 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.019473 B = 8532.359843 C = 9477.762917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.309 3.691 3 N -0.520 5.520 4 C 0.175 3.825 5 C -0.209 4.209 6 C 0.181 3.819 7 N -0.531 5.531 8 C -0.070 4.070 9 C -0.115 4.115 10 C -0.126 4.126 11 C 0.216 3.784 12 H 0.102 0.898 13 N -0.751 5.751 14 C 0.698 3.302 15 O -0.579 6.579 16 N -0.618 5.618 17 C 0.116 3.884 18 C -0.134 4.134 19 C -0.109 4.109 20 C 0.038 3.962 21 H 0.037 0.963 22 C -0.525 4.525 23 H 0.058 0.942 24 C 0.067 3.933 25 N -0.874 5.874 26 Si 0.886 3.114 27 H -0.280 1.280 28 H -0.287 1.287 29 H -0.274 1.274 30 C 0.133 3.867 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.187 0.813 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.394 0.606 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.263 0.737 49 H 0.106 0.894 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -20.742 4.499 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.234 5.234 4 C 0.009 3.991 5 C -0.214 4.214 6 C 0.036 3.964 7 N -0.246 5.246 8 C -0.108 4.108 9 C -0.153 4.153 10 C -0.164 4.164 11 C 0.109 3.891 12 H 0.119 0.881 13 N -0.410 5.410 14 C 0.400 3.600 15 O -0.458 6.458 16 N -0.354 5.354 17 C -0.008 4.008 18 C -0.173 4.173 19 C -0.147 4.147 20 C 0.019 3.981 21 H 0.055 0.945 22 C -0.563 4.563 23 H 0.076 0.924 24 C -0.137 4.137 25 N -0.510 5.510 26 Si 0.714 3.286 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.199 1.199 30 C 0.012 3.988 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.204 0.796 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.230 0.770 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.124 0.876 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.721 -20.466 3.503 20.776 hybrid contribution 1.257 0.935 0.100 1.570 sum 0.536 -19.531 3.603 19.868 Atomic orbital electron populations 1.20525 0.86015 1.03875 1.03677 1.23254 0.98150 0.83732 0.90679 1.68443 1.10336 1.29948 1.14643 1.24201 0.89043 0.99937 0.85935 1.21616 0.98954 0.94864 1.05991 1.21237 0.89326 0.95040 0.90830 1.68173 1.09190 1.30763 1.16490 1.20401 0.94941 0.92008 1.03421 1.21547 0.94212 0.99035 1.00554 1.21850 1.00848 0.92985 1.00678 1.19295 0.87543 0.87033 0.95225 0.88067 1.45511 1.73363 1.06017 1.16088 1.16019 0.78869 0.80376 0.84733 1.90926 1.53814 1.80432 1.20611 1.47787 1.65716 1.10856 1.11040 1.21520 0.99178 0.97427 0.82712 1.21953 1.00467 0.97517 0.97312 1.21610 1.00127 0.92960 0.99969 1.18988 0.96512 0.94079 0.88536 0.94524 1.21020 1.35302 0.95735 1.04271 0.92419 1.25031 0.94302 0.97251 0.97130 1.69989 1.28847 1.38106 1.14089 0.86671 0.78493 0.84415 0.79002 1.20653 1.21280 1.19914 1.22132 0.98929 0.75002 1.02695 0.89838 0.89984 0.89634 0.79609 0.89219 0.89352 0.90868 0.90021 0.90029 0.90936 0.76984 0.91903 0.92141 0.92260 0.92161 0.92930 0.93264 0.92715 0.87576 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.32 36.00 0.37 -0.57 16 2 C 0.31 4.80 7.64 -157.34 -1.20 3.60 16 3 N -0.52 -9.50 10.34 -10.69 -0.11 -9.61 16 4 C 0.18 3.21 10.24 -17.11 -0.18 3.03 16 5 C -0.21 -3.06 5.54 -104.68 -0.58 -3.64 16 6 C 0.18 2.38 6.62 -82.43 -0.55 1.83 16 7 N -0.53 -7.75 10.22 -7.19 -0.07 -7.82 16 8 C -0.07 -0.61 5.96 -28.10 -0.17 -0.78 16 9 C -0.12 -0.81 5.97 -26.67 -0.16 -0.96 16 10 C -0.13 -1.01 5.43 -26.65 -0.14 -1.15 16 11 C 0.22 2.70 2.59 -69.34 -0.18 2.52 16 12 H 0.10 1.43 7.64 -51.93 -0.40 1.04 16 13 N -0.75 -10.28 4.77 -60.06 -0.29 -10.57 16 14 C 0.70 13.08 7.01 -86.92 -0.61 12.47 16 15 O -0.58 -13.32 13.30 5.29 0.07 -13.25 16 16 N -0.62 -11.64 2.97 -178.49 -0.53 -12.17 16 17 C 0.12 1.66 6.39 -3.71 -0.02 1.64 16 18 C -0.13 -2.08 6.08 -26.61 -0.16 -2.25 16 19 C -0.11 -2.11 5.11 -26.69 -0.14 -2.25 16 20 C 0.04 0.92 2.11 -91.66 -0.19 0.73 16 21 H 0.04 1.02 8.09 -51.92 -0.42 0.60 16 22 C -0.52 -14.09 8.48 -34.44 -0.29 -14.39 16 23 H 0.06 1.52 7.77 -52.49 -0.41 1.12 16 24 C 0.07 1.84 5.24 -17.82 -0.09 1.75 16 25 N -0.87 -25.62 12.22 55.43 0.68 -24.94 16 26 Si 0.89 21.25 29.55 -169.99 -5.02 16.22 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 30 C 0.13 3.09 5.49 -3.71 -0.02 3.07 16 31 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.19 3.97 4.47 -52.48 -0.23 3.73 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.39 4.34 6.08 -40.82 -0.25 4.09 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.68 5.65 -51.93 -0.29 0.38 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.11 2.91 5.93 -51.93 -0.31 2.60 16 50 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -33.09 386.90 -11.54 -44.63 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.78 Total: 7.01 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -4.31 Total: 4.66 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.32 Total: -65.11 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.25 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.09 -11.54 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853750309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.100 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds