Wall clock time and date at job start Wed Apr 1 2020 02:55:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.31814 * 119.16502 * 2 1
4 4 C 1.32193 * 120.63916 * 180.11685 * 3 2 1
5 5 C 1.39017 * 119.27400 * 359.95359 * 4 3 2
6 6 C 1.37768 * 118.46504 * 359.81701 * 5 4 3
7 7 N 1.31605 * 119.16288 * 179.97438 * 2 1 3
8 8 C 1.50445 * 122.58210 * 180.65422 * 6 5 4
9 9 C 1.52815 * 110.43880 * 342.19081 * 8 6 5
10 10 C 1.53309 * 108.51059 * 51.07989 * 9 8 6
11 11 C 1.50343 * 118.73426 * 179.76294 * 5 4 3
12 12 H 1.08994 * 109.30787 * 282.58846 * 11 5 4
13 13 N 1.46504 * 109.30637 * 42.18435 * 11 5 4
14 14 C 1.34770 * 119.99770 * 274.99999 * 13 11 5
15 15 O 1.21585 * 120.00217 * 4.41434 * 14 13 11
16 16 N 1.34786 * 119.99958 * 184.41179 * 14 13 11
17 17 C 1.46924 * 120.62653 * 354.96712 * 16 14 13
18 18 C 1.53191 * 108.77592 * 126.38404 * 17 16 14
19 19 C 1.53048 * 109.30742 * 54.63584 * 18 17 16
20 20 C 1.53036 * 109.53603 * 298.63167 * 19 18 17
21 21 H 1.08995 * 109.49904 * 301.38316 * 20 19 18
22 22 C 1.50709 * 109.49635 * 181.31994 * 20 19 18
23 23 H 1.07994 * 119.99717 * 335.11061 * 22 20 19
24 24 C 1.37875 * 119.99730 * 155.11349 * 22 20 19
25 25 N 1.31514 * 120.00185 * 355.03306 * 24 22 20
26 26 Si 1.86803 * 119.99497 * 175.03694 * 24 22 20
27 27 H 1.48498 * 109.47172 * 359.97438 * 26 24 22
28 28 H 1.48501 * 109.46907 * 239.99777 * 26 24 22
29 29 H 1.48496 * 109.47002 * 119.99997 * 26 24 22
30 30 C 1.46926 * 120.60356 * 174.93869 * 16 14 13
31 31 H 1.08995 * 109.47442 * 270.02612 * 1 2 3
32 32 H 1.09004 * 109.46914 * 30.02238 * 1 2 3
33 33 H 1.08996 * 109.47150 * 150.01965 * 1 2 3
34 34 H 1.07999 * 120.35971 * 179.97438 * 4 3 2
35 35 H 1.08992 * 109.31161 * 102.48646 * 8 6 5
36 36 H 1.08998 * 109.30536 * 221.89495 * 8 6 5
37 37 H 1.08992 * 109.62930 * 170.78681 * 9 8 6
38 38 H 1.09005 * 109.62882 * 291.17383 * 9 8 6
39 39 H 1.08999 * 109.63411 * 170.52197 * 10 9 8
40 40 H 1.09001 * 109.63555 * 49.92657 * 10 9 8
41 41 H 0.96997 * 119.99735 * 94.99371 * 13 11 5
42 42 H 1.08999 * 109.58991 * 6.60251 * 17 16 14
43 43 H 1.09001 * 109.70574 * 246.24401 * 17 16 14
44 44 H 1.08994 * 109.49854 * 294.68461 * 18 17 16
45 45 H 1.08999 * 109.52874 * 174.59669 * 18 17 16
46 46 H 1.08999 * 109.45576 * 178.61396 * 19 18 17
47 47 H 1.08995 * 109.46137 * 58.65651 * 19 18 17
48 48 H 0.96994 * 119.99954 * 5.04334 * 25 24 22
49 49 H 1.09005 * 109.55897 * 113.81361 * 30 16 14
50 50 H 1.09000 * 109.61978 * 353.38501 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.1494 1.1510 0.0000
4 6 3.4709 1.1850 -0.0023
5 6 4.1817 -0.0097 -0.0038
6 6 3.4765 -1.1932 0.0011
7 7 2.1484 -1.1492 0.0005
8 6 4.1509 -2.5380 0.0145
9 6 5.6111 -2.4071 -0.4167
10 6 6.2680 -1.3021 0.4186
11 6 5.6841 0.0431 -0.0119
12 1 6.0311 0.2779 -1.0181
13 7 6.1371 1.0858 0.9122
14 6 6.2167 2.3656 0.4973
15 8 5.8371 2.6681 -0.6174
16 7 6.7172 3.3103 1.3182
17 6 7.0775 2.9827 2.7045
18 6 8.5262 3.4144 2.9525
19 6 8.6814 4.8946 2.5957
20 6 8.3635 5.0996 1.1128
21 1 9.0340 4.4881 0.5091
22 6 8.5479 6.5519 0.7549
23 1 8.4611 7.3112 1.5179
24 6 8.8274 6.9110 -0.5466
25 7 9.0297 5.9826 -1.4559
26 14 8.9188 8.7162 -1.0182
27 1 8.6543 9.5545 0.1786
28 1 7.9021 9.0075 -2.0606
29 1 10.2722 9.0215 -1.5477
30 6 6.9131 4.6867 0.8430
31 1 -0.3634 0.0005 1.0276
32 1 -0.3633 0.8898 -0.5142
33 1 -0.3633 -0.8901 -0.5135
34 1 3.9926 2.1307 -0.0027
35 1 4.1083 -2.9526 1.0216
36 1 3.6315 -3.2084 -0.6703
37 1 6.1289 -3.3510 -0.2473
38 1 5.6587 -2.1480 -1.4744
39 1 7.3446 -1.3053 0.2484
40 1 6.0610 -1.4698 1.4755
41 1 6.3796 0.8551 1.8226
42 1 6.9844 1.9082 2.8621
43 1 6.4160 3.5114 3.3908
44 1 9.1948 2.8184 2.3315
45 1 8.7760 3.2654 4.0030
46 1 9.7054 5.2106 2.7946
47 1 7.9947 5.4877 3.1997
48 1 8.9106 5.0472 -1.2288
49 1 6.2376 5.3562 1.3755
50 1 6.7120 4.7365 -0.2271
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000853750310.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:05
Heat of formation + Delta-G solvation = -15.285724 kcal
Electronic energy + Delta-G solvation = -31133.349996 eV
Core-core repulsion = 27158.870517 eV
Total energy + Delta-G solvation = -3974.479478 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.66647 -41.41836 -39.10547 -38.17505 -35.92145 -35.55003 -34.28000 -33.34186
-33.26920 -31.61455 -30.36296 -29.08692 -26.69334 -26.38334 -25.60139 -23.98978
-23.77302 -23.48627 -21.97195 -21.16678 -20.45701 -19.32805 -18.92595 -18.49055
-17.86836 -17.41641 -16.78085 -16.25326 -16.02096 -15.85194 -15.66583 -15.60224
-15.32177 -15.04015 -14.83022 -14.71664 -14.48699 -14.37558 -14.05819 -13.79040
-13.62827 -13.39427 -13.28304 -13.25961 -12.93808 -12.71867 -12.67472 -12.42938
-12.29397 -11.98049 -11.95100 -11.92031 -11.77004 -11.65482 -11.40518 -11.32200
-11.11879 -10.72083 -10.46023 -10.41692 -10.25618 -10.19361 -9.46729 -8.61791
-6.35158 -0.24629 -0.04598 1.50490 1.55433 1.63088 1.75703 2.01907
2.55225 2.58693 2.85606 2.86824 3.05726 3.20292 3.40308 3.56749
3.62563 3.89192 3.99073 4.04148 4.05355 4.10667 4.19659 4.28000
4.36871 4.42221 4.45447 4.55844 4.62419 4.63893 4.64666 4.70213
4.81723 4.87369 4.90592 4.90881 4.96845 4.98211 5.09201 5.13556
5.13945 5.16144 5.26506 5.40758 5.42518 5.46809 5.54264 5.64203
5.91593 5.92885 6.11578 6.21661 6.62219 6.93333 7.00870 7.46477
7.47122 8.75537
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014347 B = 0.002911 C = 0.002710
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1951.206646 B = 9616.952315 C =10330.139985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.297 3.703
3 N -0.553 5.553
4 C 0.147 3.853
5 C -0.209 4.209
6 C 0.189 3.811
7 N -0.532 5.532
8 C -0.068 4.068
9 C -0.110 4.110
10 C -0.117 4.117
11 C 0.214 3.786
12 H 0.074 0.926
13 N -0.726 5.726
14 C 0.695 3.305
15 O -0.634 6.634
16 N -0.625 5.625
17 C 0.111 3.889
18 C -0.125 4.125
19 C -0.099 4.099
20 C 0.020 3.980
21 H -0.003 1.003
22 C -0.604 4.604
23 H 0.052 0.948
24 C -0.033 4.033
25 N -0.936 5.936
26 Si 1.116 2.884
27 H -0.266 1.266
28 H -0.287 1.287
29 H -0.279 1.279
30 C 0.152 3.848
31 H 0.100 0.900
32 H 0.085 0.915
33 H 0.100 0.900
34 H 0.150 0.850
35 H 0.114 0.886
36 H 0.102 0.898
37 H 0.118 0.882
38 H 0.063 0.937
39 H 0.094 0.906
40 H 0.095 0.905
41 H 0.411 0.589
42 H 0.105 0.895
43 H 0.080 0.920
44 H 0.052 0.948
45 H 0.106 0.894
46 H 0.048 0.952
47 H 0.056 0.944
48 H 0.255 0.745
49 H 0.049 0.951
50 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.986 -21.601 10.602 25.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.030 3.970
3 N -0.268 5.268
4 C -0.019 4.019
5 C -0.214 4.214
6 C 0.043 3.957
7 N -0.247 5.247
8 C -0.105 4.105
9 C -0.148 4.148
10 C -0.155 4.155
11 C 0.107 3.893
12 H 0.092 0.908
13 N -0.384 5.384
14 C 0.397 3.603
15 O -0.516 6.516
16 N -0.360 5.360
17 C -0.011 4.011
18 C -0.163 4.163
19 C -0.137 4.137
20 C 0.000 4.000
21 H 0.015 0.985
22 C -0.642 4.642
23 H 0.070 0.930
24 C -0.231 4.231
25 N -0.573 5.573
26 Si 0.938 3.062
27 H -0.190 1.190
28 H -0.213 1.213
29 H -0.205 1.205
30 C 0.028 3.972
31 H 0.118 0.882
32 H 0.104 0.896
33 H 0.119 0.881
34 H 0.167 0.833
35 H 0.132 0.868
36 H 0.120 0.880
37 H 0.136 0.864
38 H 0.081 0.919
39 H 0.113 0.887
40 H 0.113 0.887
41 H 0.251 0.749
42 H 0.123 0.877
43 H 0.098 0.902
44 H 0.071 0.929
45 H 0.124 0.876
46 H 0.066 0.934
47 H 0.075 0.925
48 H 0.066 0.934
49 H 0.068 0.932
50 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -9.908 -20.359 8.597 24.219
hybrid contribution 0.639 -0.169 0.961 1.166
sum -9.270 -20.528 9.557 24.468
Atomic orbital electron populations
1.20656 0.83300 1.04851 1.04933 1.23995 0.99827 0.83284 0.89874
1.68351 1.10305 1.31756 1.16428 1.23698 0.89679 0.99766 0.88729
1.21684 0.99524 0.94456 1.05772 1.22016 0.89016 0.96464 0.88190
1.68355 1.09759 1.30132 1.16431 1.20607 0.95351 0.89272 1.05265
1.21587 0.93410 1.00106 0.99713 1.21894 1.01502 0.90034 1.02079
1.19509 0.86878 0.88831 0.94061 0.90800 1.45235 1.72122 1.04453
1.16616 1.16195 0.78440 0.81807 0.83850 1.90884 1.56739 1.81610
1.22362 1.47643 1.65670 1.09557 1.13138 1.21885 0.96618 1.01664
0.80928 1.21916 0.95812 0.95750 1.02807 1.21434 1.00456 0.96199
0.95640 1.19136 0.91119 0.95274 0.94466 0.98453 1.22324 1.52490
0.93055 0.96359 0.92963 1.27274 0.92726 1.09517 0.93619 1.70856
1.46828 1.01777 1.37832 0.82961 0.77182 0.70021 0.76029 1.18996
1.21304 1.20527 1.21624 0.98878 0.79058 0.97606 0.88190 0.89619
0.88114 0.83275 0.86788 0.88005 0.86368 0.91853 0.88712 0.88677
0.74877 0.87729 0.90219 0.92894 0.87608 0.93366 0.92548 0.93408
0.93231 0.94702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.48 10.32 71.24 0.74 -0.74 16
2 C 0.30 8.23 7.64 138.80 1.06 9.30 16
3 N -0.55 -18.68 10.34 -187.72 -1.94 -20.62 16
4 C 0.15 5.09 10.26 84.83 0.87 5.96 16
5 C -0.21 -5.69 5.54 -19.90 -0.11 -5.80 16
6 C 0.19 4.31 6.62 42.21 0.28 4.59 16
7 N -0.53 -13.58 10.22 -176.64 -1.80 -15.38 16
8 C -0.07 -0.85 5.95 29.71 0.18 -0.68 16
9 C -0.11 -1.10 5.97 30.64 0.18 -0.92 16
10 C -0.12 -1.50 5.44 30.64 0.17 -1.33 16
11 C 0.21 5.12 2.59 44.08 0.11 5.24 16
12 H 0.07 2.23 7.62 -2.39 -0.02 2.21 16
13 N -0.73 -18.93 4.75 -462.23 -2.20 -21.13 16
14 C 0.70 26.36 7.01 179.05 1.25 27.61 16
15 O -0.63 -30.60 13.41 -3.99 -0.05 -30.65 16
16 N -0.62 -23.29 2.97 -836.90 -2.49 -25.78 16
17 C 0.11 2.84 6.43 86.36 0.56 3.40 16
18 C -0.12 -3.41 6.08 30.67 0.19 -3.22 16
19 C -0.10 -3.77 5.15 30.62 0.16 -3.62 16
20 C 0.02 0.98 1.98 -11.46 -0.02 0.95 16
21 H 0.00 -0.16 6.66 -2.39 -0.02 -0.17 16
22 C -0.60 -33.70 8.32 25.60 0.21 -33.49 16
23 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16
24 C -0.03 -1.91 5.45 84.65 0.46 -1.45 16
25 N -0.94 -59.59 13.63 21.45 0.29 -59.29 16
26 Si 1.12 51.67 29.91 68.60 2.05 53.72 16
27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
28 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16
29 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
30 C 0.15 7.24 5.68 86.36 0.49 7.73 16
31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
34 H 0.15 6.12 4.57 -2.91 -0.01 6.10 16
35 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16
36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
37 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16
38 H 0.06 0.80 8.11 -2.38 -0.02 0.79 16
39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
40 H 0.09 0.85 8.10 -2.39 -0.02 0.83 16
41 H 0.41 7.68 6.06 -92.71 -0.56 7.11 16
42 H 0.10 1.80 5.56 -2.39 -0.01 1.79 16
43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
45 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16
46 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
48 H 0.26 16.77 6.65 -92.71 -0.62 16.16 16
49 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16
50 H 0.03 1.99 7.04 -2.39 -0.02 1.98 16
Total: -1.00 -82.18 387.01 1.18 -80.99
By element:
Atomic # 1 Polarization: 24.06 SS G_CDS: 0.55 Total: 24.61 kcal
Atomic # 6 Polarization: 6.76 SS G_CDS: 6.77 Total: 13.53 kcal
Atomic # 7 Polarization: -134.06 SS G_CDS: -8.14 Total: -142.20 kcal
Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal
Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal
Total: -82.18 1.18 -80.99 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000853750310.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.706 kcal
(2) G-P(sol) polarization free energy of solvation -82.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.469 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.286 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds