Wall clock time and date at job start Wed Apr 1 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31811 * 119.16652 * 2 1 4 4 C 1.32187 * 120.64165 * 179.89496 * 3 2 1 5 5 C 1.39312 * 119.20931 * 0.18425 * 4 3 2 6 6 C 1.37494 * 118.45486 * 359.79132 * 5 4 3 7 7 N 1.31599 * 119.16041 * 179.97438 * 2 1 3 8 8 C 1.50444 * 122.50990 * 179.89311 * 6 5 4 9 9 C 1.52815 * 110.44715 * 17.69984 * 8 6 5 10 10 C 1.53312 * 108.50574 * 308.99557 * 9 8 6 11 11 C 1.50337 * 118.53703 * 180.35257 * 5 4 3 12 12 H 1.08992 * 109.31253 * 76.87644 * 11 5 4 13 13 N 1.46502 * 109.31085 * 317.27633 * 11 5 4 14 14 C 1.34772 * 119.99901 * 84.59849 * 13 11 5 15 15 O 1.21588 * 120.00257 * 5.25466 * 14 13 11 16 16 N 1.34785 * 120.00214 * 185.24347 * 14 13 11 17 17 C 1.46921 * 120.62676 * 354.79571 * 16 14 13 18 18 C 1.53194 * 108.89362 * 233.55457 * 17 16 14 19 19 C 1.53075 * 109.29476 * 305.58174 * 18 17 16 20 20 C 1.53043 * 109.65856 * 61.14989 * 19 18 17 21 21 H 1.08996 * 109.49711 * 58.65467 * 20 19 18 22 22 C 1.50703 * 109.49413 * 178.75105 * 20 19 18 23 23 H 1.07995 * 120.00314 * 359.83643 * 22 20 19 24 24 C 1.37880 * 119.99537 * 179.83967 * 22 20 19 25 25 N 1.31517 * 120.00185 * 359.97438 * 24 22 20 26 26 Si 1.86797 * 119.99734 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47366 * 59.99834 * 26 24 22 28 28 H 1.48502 * 109.46936 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47124 * 299.99487 * 26 24 22 30 30 C 1.46919 * 120.63033 * 174.81431 * 16 14 13 31 31 H 1.09001 * 109.46966 * 270.02516 * 1 2 3 32 32 H 1.09001 * 109.47216 * 30.02063 * 1 2 3 33 33 H 1.08996 * 109.47265 * 150.02657 * 1 2 3 34 34 H 1.07995 * 120.36658 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.30528 * 257.40603 * 8 6 5 36 36 H 1.08995 * 109.31195 * 137.99780 * 8 6 5 37 37 H 1.08998 * 109.63467 * 189.28876 * 9 8 6 38 38 H 1.09001 * 109.63422 * 68.69638 * 9 8 6 39 39 H 1.09004 * 109.63634 * 310.13162 * 10 9 8 40 40 H 1.08998 * 109.64039 * 189.53043 * 10 9 8 41 41 H 0.97003 * 120.00283 * 264.60659 * 13 11 5 42 42 H 1.08997 * 109.58897 * 353.41068 * 17 16 14 43 43 H 1.09000 * 109.58755 * 113.70012 * 17 16 14 44 44 H 1.09009 * 109.49674 * 65.38750 * 18 17 16 45 45 H 1.09000 * 109.50293 * 185.48719 * 18 17 16 46 46 H 1.08997 * 109.34632 * 301.12537 * 19 18 17 47 47 H 1.09003 * 109.44440 * 181.23216 * 19 18 17 48 48 H 0.97001 * 120.00199 * 180.02562 * 25 24 22 49 49 H 1.09005 * 109.58721 * 246.16009 * 30 16 14 50 50 H 1.09004 * 109.59190 * 6.44013 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4708 1.1850 0.0021 5 6 4.1817 -0.0131 0.0004 6 6 3.4765 -1.1933 0.0010 7 7 2.1482 -1.1492 0.0005 8 6 4.1508 -2.5382 -0.0031 9 6 5.6109 -2.4046 0.4277 10 6 6.2677 -1.3040 -0.4135 11 6 5.6840 0.0432 0.0109 12 1 6.0286 0.2846 1.0163 13 7 6.1365 1.0815 -0.9184 14 6 6.2047 2.3651 -0.5134 15 8 5.9833 2.6488 0.6480 16 7 6.5187 3.3344 -1.3957 17 6 6.9000 2.9972 -2.7739 18 6 8.2472 3.6540 -3.0908 19 6 8.1560 5.1560 -2.8103 20 6 7.8394 5.3852 -1.3306 21 1 8.6169 4.9297 -0.7174 22 6 7.7808 6.8651 -1.0522 23 1 7.9548 7.5720 -1.8499 24 6 7.5051 7.3166 0.2211 25 7 7.2928 6.4557 1.1925 26 14 7.4332 9.1510 0.5664 27 1 6.3753 9.7713 -0.2710 28 1 7.1214 9.3726 2.0013 29 1 8.7451 9.7673 0.2436 30 6 6.4866 4.7482 -0.9974 31 1 -0.3633 0.0005 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 3.9926 2.1306 0.0025 35 1 4.1086 -2.9594 -1.0075 36 1 3.6313 -3.2040 0.6859 37 1 6.1291 -3.3494 0.2636 38 1 5.6582 -2.1362 1.4831 39 1 6.0600 -1.4769 -1.4695 40 1 7.3444 -1.3065 -0.2438 41 1 6.3868 0.8451 -1.8253 42 1 6.9883 1.9154 -2.8743 43 1 6.1417 3.3675 -3.4638 44 1 9.0226 3.2150 -2.4628 45 1 8.4932 3.4919 -4.1402 46 1 7.3655 5.5903 -3.4223 47 1 9.1068 5.6294 -3.0557 48 1 7.0985 6.7734 2.0882 49 1 5.6959 5.2636 -1.5426 50 1 6.2996 4.8220 0.0739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853750312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:13 Heat of formation + Delta-G solvation = 11.170622 kcal Electronic energy + Delta-G solvation = -31223.694135 eV Core-core repulsion = 27250.361890 eV Total energy + Delta-G solvation = -3973.332245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53342 -39.83178 -37.78050 -36.69761 -34.59772 -33.58057 -32.81746 -32.35740 -31.75523 -29.92159 -29.19139 -28.21713 -25.12964 -24.98451 -24.23864 -23.03430 -22.52975 -21.83708 -20.22675 -20.08376 -18.83913 -17.88584 -17.49338 -16.52292 -16.25600 -16.11918 -15.63809 -15.11271 -14.71830 -14.43198 -14.28032 -13.95807 -13.89959 -13.74684 -13.66041 -13.38370 -13.10223 -12.89184 -12.72120 -12.58267 -12.48420 -12.22499 -12.01215 -11.93397 -11.79191 -11.58844 -11.20244 -10.98618 -10.90530 -10.73445 -10.53038 -10.43520 -10.40692 -10.23169 -9.89386 -9.57082 -9.20587 -9.11111 -9.10522 -8.96701 -8.92906 -8.41548 -7.71268 -5.97419 -4.06708 0.87247 1.09926 3.07276 3.33743 3.39686 3.40684 3.63705 3.73100 3.79832 4.12560 4.25327 4.35443 4.44953 4.49462 4.63902 4.74522 4.83489 5.09702 5.19578 5.24499 5.25879 5.31842 5.32351 5.42315 5.43174 5.45608 5.53879 5.57632 5.60244 5.71070 5.77332 5.84047 5.92135 5.96787 6.02345 6.12596 6.29053 6.49093 6.55300 6.63516 6.67129 6.77635 6.97022 7.01023 7.03704 7.30271 7.44210 7.73122 7.91627 8.05207 8.13484 8.40845 8.48093 8.96280 9.11923 9.58878 11.07370 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003102 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.206079 B = 9024.089013 C =10021.800893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.309 3.691 3 N -0.522 5.522 4 C 0.177 3.823 5 C -0.204 4.204 6 C 0.183 3.817 7 N -0.528 5.528 8 C -0.071 4.071 9 C -0.115 4.115 10 C -0.126 4.126 11 C 0.214 3.786 12 H 0.106 0.894 13 N -0.752 5.752 14 C 0.697 3.303 15 O -0.578 6.578 16 N -0.619 5.619 17 C 0.115 3.885 18 C -0.133 4.133 19 C -0.110 4.110 20 C 0.041 3.959 21 H 0.029 0.971 22 C -0.523 4.523 23 H 0.057 0.943 24 C 0.064 3.936 25 N -0.878 5.878 26 Si 0.891 3.109 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.278 1.278 30 C 0.127 3.873 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.177 0.823 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.393 0.607 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.264 0.736 49 H 0.040 0.960 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 -19.787 -6.286 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.236 5.236 4 C 0.010 3.990 5 C -0.209 4.209 6 C 0.038 3.962 7 N -0.243 5.243 8 C -0.108 4.108 9 C -0.154 4.154 10 C -0.164 4.164 11 C 0.106 3.894 12 H 0.123 0.877 13 N -0.411 5.411 14 C 0.399 3.601 15 O -0.455 6.455 16 N -0.355 5.355 17 C -0.010 4.010 18 C -0.171 4.171 19 C -0.148 4.148 20 C 0.022 3.978 21 H 0.047 0.953 22 C -0.562 4.562 23 H 0.075 0.925 24 C -0.139 4.139 25 N -0.515 5.515 26 Si 0.719 3.281 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.203 1.203 30 C 0.007 3.993 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.194 0.806 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.700 -19.534 -5.225 21.302 hybrid contribution 0.990 1.038 -0.304 1.466 sum -5.710 -18.496 -5.529 20.131 Atomic orbital electron populations 1.20524 0.85938 1.03889 1.03718 1.23227 0.98136 0.83658 0.90786 1.68372 1.10161 1.30190 1.14870 1.23860 0.89060 0.99364 0.86761 1.21633 0.99156 0.94785 1.05354 1.21164 0.89233 0.95129 0.90674 1.68190 1.09222 1.30686 1.16235 1.20410 0.95031 0.91897 1.03491 1.21556 0.94101 0.99128 1.00606 1.21853 1.01016 0.92951 1.00583 1.19296 0.87217 0.87186 0.95662 0.87667 1.45494 1.73586 1.06175 1.15850 1.16021 0.78517 0.80329 0.85242 1.90962 1.57221 1.81364 1.15992 1.47834 1.69863 1.08020 1.09801 1.21504 0.97099 0.98003 0.84355 1.21947 0.96410 0.98746 1.00011 1.21626 1.00523 0.92397 1.00239 1.18959 0.93223 0.95708 0.89923 0.95324 1.21029 1.49531 0.91012 0.94608 0.92467 1.25047 0.94949 0.97629 0.96319 1.69880 1.46782 1.33451 1.01392 0.86670 0.78465 0.85695 0.77240 1.20251 1.21260 1.20332 1.22239 0.99019 0.73595 1.04468 0.89800 0.89694 0.89907 0.80606 0.89293 0.89194 0.89976 0.90813 0.90980 0.89934 0.77043 0.92202 0.92106 0.92160 0.92285 0.93218 0.93043 0.92597 0.94149 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.32 36.01 0.37 -0.47 16 2 C 0.31 4.45 7.64 -157.35 -1.20 3.25 16 3 N -0.52 -8.74 10.34 -10.62 -0.11 -8.85 16 4 C 0.18 3.00 10.35 -17.00 -0.18 2.82 16 5 C -0.20 -2.86 5.53 -104.67 -0.58 -3.44 16 6 C 0.18 2.30 6.62 -82.53 -0.55 1.75 16 7 N -0.53 -7.29 10.22 -7.25 -0.07 -7.36 16 8 C -0.07 -0.59 5.95 -28.10 -0.17 -0.76 16 9 C -0.12 -0.82 5.97 -26.66 -0.16 -0.98 16 10 C -0.13 -1.04 5.43 -26.66 -0.14 -1.19 16 11 C 0.21 2.69 2.63 -69.34 -0.18 2.51 16 12 H 0.11 1.55 7.50 -51.93 -0.39 1.16 16 13 N -0.75 -10.48 4.76 -60.07 -0.29 -10.76 16 14 C 0.70 13.31 6.65 -86.91 -0.58 12.73 16 15 O -0.58 -13.55 13.95 5.29 0.07 -13.47 16 16 N -0.62 -11.94 2.97 -178.50 -0.53 -12.47 16 17 C 0.11 1.69 6.38 -3.71 -0.02 1.67 16 18 C -0.13 -2.05 6.09 -26.59 -0.16 -2.21 16 19 C -0.11 -2.14 5.10 -26.67 -0.14 -2.28 16 20 C 0.04 1.00 2.26 -91.65 -0.21 0.79 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 23 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 24 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 25 N -0.88 -25.52 11.39 55.43 0.63 -24.89 16 26 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 30 C 0.13 3.03 5.41 -3.71 -0.02 3.01 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.18 3.42 4.85 -52.49 -0.25 3.17 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.39 4.43 6.09 -40.82 -0.25 4.18 16 42 H 0.06 0.68 5.64 -51.93 -0.29 0.39 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.12 3.47 5.12 -51.93 -0.27 3.21 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -32.83 386.13 -11.55 -44.38 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.75 Total: 6.84 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -4.30 Total: 4.51 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.37 Total: -64.33 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.07 Total: -13.47 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.83 -11.55 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853750312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.555 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds