Wall clock time and date at job start Wed Apr 1 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31811 * 119.16652 * 2 1 4 4 C 1.32187 * 120.64165 * 179.89496 * 3 2 1 5 5 C 1.39312 * 119.20931 * 0.18425 * 4 3 2 6 6 C 1.37494 * 118.45486 * 359.79132 * 5 4 3 7 7 N 1.31599 * 119.16041 * 179.97438 * 2 1 3 8 8 C 1.50444 * 122.50990 * 179.89311 * 6 5 4 9 9 C 1.52815 * 110.44715 * 17.69984 * 8 6 5 10 10 C 1.53312 * 108.50574 * 308.99557 * 9 8 6 11 11 C 1.50337 * 118.53703 * 180.35257 * 5 4 3 12 12 H 1.08992 * 109.31253 * 76.87644 * 11 5 4 13 13 N 1.46502 * 109.31085 * 317.27633 * 11 5 4 14 14 C 1.34772 * 119.99901 * 84.59849 * 13 11 5 15 15 O 1.21588 * 120.00257 * 5.25466 * 14 13 11 16 16 N 1.34785 * 120.00214 * 185.24347 * 14 13 11 17 17 C 1.46921 * 120.62676 * 354.79571 * 16 14 13 18 18 C 1.53194 * 108.89362 * 233.55457 * 17 16 14 19 19 C 1.53075 * 109.29476 * 305.58174 * 18 17 16 20 20 C 1.53043 * 109.65856 * 61.14989 * 19 18 17 21 21 H 1.08996 * 109.49711 * 58.65467 * 20 19 18 22 22 C 1.50703 * 109.49413 * 178.75105 * 20 19 18 23 23 H 1.07995 * 120.00314 * 359.83643 * 22 20 19 24 24 C 1.37880 * 119.99537 * 179.83967 * 22 20 19 25 25 N 1.31517 * 120.00185 * 359.97438 * 24 22 20 26 26 Si 1.86797 * 119.99734 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47366 * 59.99834 * 26 24 22 28 28 H 1.48502 * 109.46936 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47124 * 299.99487 * 26 24 22 30 30 C 1.46919 * 120.63033 * 174.81431 * 16 14 13 31 31 H 1.09001 * 109.46966 * 270.02516 * 1 2 3 32 32 H 1.09001 * 109.47216 * 30.02063 * 1 2 3 33 33 H 1.08996 * 109.47265 * 150.02657 * 1 2 3 34 34 H 1.07995 * 120.36658 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.30528 * 257.40603 * 8 6 5 36 36 H 1.08995 * 109.31195 * 137.99780 * 8 6 5 37 37 H 1.08998 * 109.63467 * 189.28876 * 9 8 6 38 38 H 1.09001 * 109.63422 * 68.69638 * 9 8 6 39 39 H 1.09004 * 109.63634 * 310.13162 * 10 9 8 40 40 H 1.08998 * 109.64039 * 189.53043 * 10 9 8 41 41 H 0.97003 * 120.00283 * 264.60659 * 13 11 5 42 42 H 1.08997 * 109.58897 * 353.41068 * 17 16 14 43 43 H 1.09000 * 109.58755 * 113.70012 * 17 16 14 44 44 H 1.09009 * 109.49674 * 65.38750 * 18 17 16 45 45 H 1.09000 * 109.50293 * 185.48719 * 18 17 16 46 46 H 1.08997 * 109.34632 * 301.12537 * 19 18 17 47 47 H 1.09003 * 109.44440 * 181.23216 * 19 18 17 48 48 H 0.97001 * 120.00199 * 180.02562 * 25 24 22 49 49 H 1.09005 * 109.58721 * 246.16009 * 30 16 14 50 50 H 1.09004 * 109.59190 * 6.44013 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4708 1.1850 0.0021 5 6 4.1817 -0.0131 0.0004 6 6 3.4765 -1.1933 0.0010 7 7 2.1482 -1.1492 0.0005 8 6 4.1508 -2.5382 -0.0031 9 6 5.6109 -2.4046 0.4277 10 6 6.2677 -1.3040 -0.4135 11 6 5.6840 0.0432 0.0109 12 1 6.0286 0.2846 1.0163 13 7 6.1365 1.0815 -0.9184 14 6 6.2047 2.3651 -0.5134 15 8 5.9833 2.6488 0.6480 16 7 6.5187 3.3344 -1.3957 17 6 6.9000 2.9972 -2.7739 18 6 8.2472 3.6540 -3.0908 19 6 8.1560 5.1560 -2.8103 20 6 7.8394 5.3852 -1.3306 21 1 8.6169 4.9297 -0.7174 22 6 7.7808 6.8651 -1.0522 23 1 7.9548 7.5720 -1.8499 24 6 7.5051 7.3166 0.2211 25 7 7.2928 6.4557 1.1925 26 14 7.4332 9.1510 0.5664 27 1 6.3753 9.7713 -0.2710 28 1 7.1214 9.3726 2.0013 29 1 8.7451 9.7673 0.2436 30 6 6.4866 4.7482 -0.9974 31 1 -0.3633 0.0005 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 3.9926 2.1306 0.0025 35 1 4.1086 -2.9594 -1.0075 36 1 3.6313 -3.2040 0.6859 37 1 6.1291 -3.3494 0.2636 38 1 5.6582 -2.1362 1.4831 39 1 6.0600 -1.4769 -1.4695 40 1 7.3444 -1.3065 -0.2438 41 1 6.3868 0.8451 -1.8253 42 1 6.9883 1.9154 -2.8743 43 1 6.1417 3.3675 -3.4638 44 1 9.0226 3.2150 -2.4628 45 1 8.4932 3.4919 -4.1402 46 1 7.3655 5.5903 -3.4223 47 1 9.1068 5.6294 -3.0557 48 1 7.0985 6.7734 2.0882 49 1 5.6959 5.2636 -1.5426 50 1 6.2996 4.8220 0.0739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853750312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:12 Heat of formation + Delta-G solvation = -10.271449 kcal Electronic energy + Delta-G solvation = -31224.623933 eV Core-core repulsion = 27250.361890 eV Total energy + Delta-G solvation = -3974.262043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.62783 -41.27191 -38.97143 -38.05047 -35.82774 -35.31089 -34.20403 -33.32252 -33.23736 -31.56474 -30.35277 -29.06422 -27.03838 -26.28946 -25.51666 -23.95571 -23.67998 -23.36876 -21.70233 -21.08190 -20.28698 -19.13567 -18.83470 -18.19207 -17.71082 -17.31486 -16.79324 -16.57440 -16.18312 -15.91613 -15.45284 -15.25566 -15.20277 -14.81840 -14.69857 -14.53913 -14.45683 -14.25616 -14.09860 -13.75573 -13.67685 -13.50612 -13.26661 -12.94282 -12.86021 -12.70575 -12.64015 -12.39556 -12.28902 -12.24746 -11.93952 -11.85434 -11.64398 -11.59532 -11.38512 -11.23642 -10.95466 -10.84640 -10.50969 -10.37142 -10.23489 -10.16062 -9.30745 -8.09670 -6.27040 -0.23104 -0.03167 1.40165 1.41793 1.50000 1.72988 2.16290 2.41778 2.60788 2.88578 2.98753 3.06874 3.19195 3.40933 3.60819 3.66375 3.97780 4.03062 4.09716 4.14689 4.21500 4.27371 4.30788 4.43441 4.47581 4.58815 4.63785 4.67024 4.72341 4.80604 4.82193 4.87052 4.89814 4.92949 5.01426 5.10579 5.16383 5.17185 5.25659 5.26571 5.30024 5.35083 5.44856 5.51806 5.56278 5.63418 5.89266 5.93602 5.97200 6.14866 6.36091 6.85765 7.02055 7.09015 7.42796 7.63374 8.92822 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003102 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.206079 B = 9024.089013 C =10021.800893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.297 3.703 3 N -0.553 5.553 4 C 0.149 3.851 5 C -0.206 4.206 6 C 0.188 3.812 7 N -0.530 5.530 8 C -0.067 4.067 9 C -0.110 4.110 10 C -0.117 4.117 11 C 0.213 3.787 12 H 0.076 0.924 13 N -0.728 5.728 14 C 0.694 3.306 15 O -0.631 6.631 16 N -0.626 5.626 17 C 0.109 3.891 18 C -0.124 4.124 19 C -0.106 4.106 20 C 0.041 3.959 21 H -0.013 1.013 22 C -0.538 4.538 23 H 0.061 0.939 24 C 0.011 3.989 25 N -0.912 5.912 26 Si 0.955 3.045 27 H -0.268 1.268 28 H -0.290 1.290 29 H -0.267 1.267 30 C 0.144 3.856 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.410 0.590 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.105 0.895 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.258 0.742 49 H 0.030 0.970 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -22.935 -8.953 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 N -0.268 5.268 4 C -0.017 4.017 5 C -0.212 4.212 6 C 0.043 3.957 7 N -0.245 5.245 8 C -0.105 4.105 9 C -0.148 4.148 10 C -0.155 4.155 11 C 0.106 3.894 12 H 0.094 0.906 13 N -0.388 5.388 14 C 0.396 3.604 15 O -0.512 6.512 16 N -0.361 5.361 17 C -0.013 4.013 18 C -0.162 4.162 19 C -0.143 4.143 20 C 0.021 3.979 21 H 0.005 0.995 22 C -0.576 4.576 23 H 0.080 0.920 24 C -0.189 4.189 25 N -0.551 5.551 26 Si 0.781 3.219 27 H -0.193 1.193 28 H -0.216 1.216 29 H -0.192 1.192 30 C 0.021 3.979 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.250 0.750 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.123 0.877 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.049 0.951 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.451 -22.719 -7.963 24.924 hybrid contribution 0.876 1.979 0.542 2.231 sum -5.575 -20.741 -7.420 22.723 Atomic orbital electron populations 1.20656 0.83299 1.05001 1.04780 1.23975 0.99807 0.83221 0.89963 1.68318 1.10268 1.31896 1.16345 1.23526 0.89731 0.99370 0.89064 1.21707 0.99697 0.94317 1.05449 1.21936 0.88976 0.96489 0.88282 1.68355 1.09775 1.30050 1.16341 1.20611 0.95409 0.89185 1.05272 1.21595 0.93349 1.00152 0.99685 1.21892 1.01550 0.89997 1.02019 1.19498 0.86658 0.88997 0.94237 0.90605 1.45233 1.72288 1.04382 1.16853 1.16199 0.78030 0.81748 0.84429 1.90922 1.59254 1.82471 1.18581 1.47696 1.70221 1.06325 1.11873 1.21861 0.97136 1.00733 0.81617 1.21900 0.96440 0.95236 1.02610 1.21515 1.00560 0.95947 0.96311 1.18880 0.92031 0.94124 0.92847 0.99528 1.21500 1.48680 0.92739 0.94730 0.92044 1.25882 0.94752 1.01972 0.96291 1.70094 1.48141 1.35385 1.01471 0.85655 0.78960 0.80515 0.76820 1.19298 1.21570 1.19217 1.21569 0.98311 0.76587 1.01452 0.88618 0.89468 0.87838 0.84112 0.86795 0.87999 0.86308 0.91835 0.88770 0.88613 0.75033 0.87985 0.90667 0.92944 0.87699 0.92659 0.92988 0.93258 0.95138 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.32 71.24 0.74 -0.81 16 2 C 0.30 8.52 7.64 138.80 1.06 9.58 16 3 N -0.55 -19.43 10.34 -187.50 -1.94 -21.37 16 4 C 0.15 5.39 10.35 84.90 0.88 6.27 16 5 C -0.21 -5.81 5.53 -19.90 -0.11 -5.92 16 6 C 0.19 4.42 6.62 42.14 0.28 4.70 16 7 N -0.53 -13.89 10.22 -176.85 -1.81 -15.69 16 8 C -0.07 -0.87 5.95 29.71 0.18 -0.69 16 9 C -0.11 -1.12 5.97 30.64 0.18 -0.93 16 10 C -0.12 -1.54 5.43 30.64 0.17 -1.37 16 11 C 0.21 5.28 2.63 44.07 0.12 5.40 16 12 H 0.08 2.36 7.50 -2.39 -0.02 2.34 16 13 N -0.73 -20.02 4.76 -462.24 -2.20 -22.22 16 14 C 0.69 27.82 6.65 179.05 1.19 29.01 16 15 O -0.63 -32.27 13.95 -3.99 -0.06 -32.33 16 16 N -0.63 -24.87 2.97 -836.91 -2.49 -27.36 16 17 C 0.11 2.98 6.38 86.36 0.55 3.53 16 18 C -0.12 -3.51 6.09 30.68 0.19 -3.32 16 19 C -0.11 -4.05 5.10 30.63 0.16 -3.89 16 20 C 0.04 2.06 2.26 -11.46 -0.03 2.03 16 21 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 22 C -0.54 -30.00 8.56 25.60 0.22 -29.78 16 23 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 24 C 0.01 0.61 5.30 84.65 0.45 1.06 16 25 N -0.91 -56.50 11.39 21.45 0.24 -56.26 16 26 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 29 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 30 C 0.14 7.28 5.41 86.36 0.47 7.74 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.14 6.08 4.85 -2.91 -0.01 6.06 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 39 H 0.09 0.89 8.10 -2.38 -0.02 0.87 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.41 8.19 6.09 -92.71 -0.56 7.63 16 42 H 0.10 1.93 5.64 -2.39 -0.01 1.92 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 49 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.08 4.65 5.12 -2.39 -0.01 4.64 16 Total: -1.00 -81.21 386.13 0.85 -80.36 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.39 Total: 25.21 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 6.68 Total: 22.61 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -8.19 Total: -142.90 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.06 Total: -32.33 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -81.21 0.85 -80.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853750312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.087 kcal (2) G-P(sol) polarization free energy of solvation -81.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds