Wall clock time and date at job start Wed Apr 1 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50697 * 109.47504 * 2 1 4 4 C 1.38604 * 119.54785 * 124.99828 * 3 2 1 5 5 C 1.38585 * 119.34975 * 180.02562 * 4 3 2 6 6 C 1.38637 * 118.48825 * 0.02562 * 5 4 3 7 7 C 1.39261 * 119.06166 * 0.02562 * 6 5 4 8 8 C 1.48163 * 119.72484 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00143 * 351.26528 * 8 7 6 10 10 N 1.34777 * 120.00558 * 171.26202 * 8 7 6 11 11 C 1.47081 * 120.87799 * 352.62719 * 10 8 7 12 12 C 1.53238 * 108.52712 * 231.20749 * 11 10 8 13 13 N 1.46896 * 109.33874 * 306.17633 * 12 11 10 14 14 C 1.46905 * 111.00207 * 187.25319 * 13 12 11 15 15 C 1.53946 * 113.73919 * 273.74220 * 14 13 12 16 16 N 1.47813 * 86.03282 * 222.08077 * 15 14 13 17 17 C 1.36934 * 134.45340 * 204.64103 * 16 15 14 18 18 H 1.07999 * 120.00231 * 179.86676 * 17 16 15 19 19 C 1.38813 * 120.00205 * 359.86898 * 17 16 15 20 20 N 1.31620 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00110 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47111 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47571 * 119.99776 * 21 19 17 24 24 H 1.48503 * 109.46896 * 240.00049 * 21 19 17 25 25 C 1.47574 * 91.05168 * 24.54795 * 16 15 14 26 26 C 1.46898 * 111.27453 * 63.10007 * 13 12 11 27 27 C 1.47082 * 120.88677 * 172.65819 * 10 8 7 28 28 N 1.31498 * 119.55143 * 305.26388 * 3 2 1 29 29 H 1.09000 * 109.47771 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47168 * 299.99684 * 1 2 3 31 31 H 1.09004 * 109.47781 * 59.99275 * 1 2 3 32 32 H 1.09003 * 109.47168 * 240.00316 * 2 1 3 33 33 H 1.08996 * 109.47657 * 120.00424 * 2 1 3 34 34 H 1.07989 * 120.32685 * 0.03144 * 4 3 2 35 35 H 1.08003 * 120.75885 * 179.97438 * 5 4 3 36 36 H 1.08000 * 120.46588 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.62602 * 111.49827 * 11 10 8 38 38 H 1.08999 * 109.62901 * 350.92575 * 11 10 8 39 39 H 1.08998 * 109.49255 * 186.21136 * 12 11 10 40 40 H 1.09003 * 109.49071 * 66.12890 * 12 11 10 41 41 H 1.09004 * 112.94265 * 45.32430 * 14 13 12 42 42 H 1.09002 * 113.76801 * 336.34031 * 15 14 13 43 43 H 1.08996 * 113.77344 * 107.74117 * 15 14 13 44 44 H 0.96995 * 119.99783 * 180.02562 * 20 19 17 45 45 H 1.09002 * 113.76953 * 221.14730 * 25 16 15 46 46 H 1.09004 * 113.87370 * 89.77079 * 25 16 15 47 47 H 1.08999 * 109.49220 * 56.85434 * 26 13 12 48 48 H 1.08994 * 109.49439 * 176.93605 * 26 13 12 49 49 H 1.09001 * 109.62305 * 248.50034 * 27 10 8 50 50 H 1.09000 * 109.62533 * 9.08164 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9122 1.8346 0.9877 5 6 3.3712 3.1422 0.9841 6 6 2.9293 3.9954 -0.0153 7 6 2.0440 3.5116 -0.9752 8 6 1.5619 4.4108 -2.0496 9 8 1.8091 5.5997 -2.0033 10 7 0.8493 3.9103 -3.0782 11 6 0.6753 2.4589 -3.2405 12 6 1.0610 2.0795 -4.6742 13 7 0.2973 2.9061 -5.6183 14 6 0.5090 2.4578 -7.0012 15 6 1.7478 3.0791 -7.6714 16 7 0.8969 3.2288 -8.8707 17 6 1.1418 3.3225 -10.2147 18 1 0.3198 3.4272 -10.9073 19 6 2.4465 3.2828 -10.6869 20 7 3.4483 3.1557 -9.8428 21 14 2.7806 3.4114 -12.5203 22 1 1.4941 3.5466 -13.2496 23 1 3.6286 4.6009 -12.7868 24 1 3.4845 2.1880 -12.9821 25 6 -0.3219 3.2344 -8.0386 26 6 0.6290 4.3294 -5.4697 27 6 0.2255 4.8010 -4.0687 28 7 1.6259 2.2524 -0.9340 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2370 1.1449 1.7526 35 1 4.0569 3.4890 1.7431 36 1 3.2663 5.0210 -0.0484 37 1 -0.3659 2.1924 -3.0588 38 1 1.3192 1.9319 -2.5364 39 1 0.8339 1.0273 -4.8456 40 1 2.1275 2.2506 -4.8212 41 1 0.4473 1.3751 -7.1110 42 1 2.0567 4.0270 -7.2307 43 1 2.5738 2.3800 -7.8018 44 1 4.3600 3.1283 -10.1727 45 1 -1.1454 2.6591 -8.4617 46 1 -0.6240 4.2273 -7.7053 47 1 1.7014 4.4691 -5.6057 48 1 0.0885 4.9089 -6.2182 49 1 -0.8589 4.7595 -3.9665 50 1 0.5722 5.8224 -3.9121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941440713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:48 Heat of formation + Delta-G solvation = 93.113175 kcal Electronic energy + Delta-G solvation = -30670.121366 eV Core-core repulsion = 26700.342416 eV Total energy + Delta-G solvation = -3969.778949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.17382 -39.71046 -38.65759 -36.59990 -34.55237 -33.91291 -32.85550 -31.78564 -30.94413 -30.21447 -28.09583 -26.39479 -25.07535 -24.79761 -24.65826 -23.44994 -22.55834 -21.83325 -21.21594 -19.72050 -18.46125 -17.51021 -16.88742 -16.76990 -16.33011 -15.90807 -15.67292 -15.25833 -14.98330 -14.91386 -14.67143 -14.56610 -14.34311 -13.92316 -13.81035 -13.67775 -13.60192 -12.96951 -12.63725 -12.40595 -12.26343 -12.19055 -11.92281 -11.73065 -11.67545 -11.49312 -11.42027 -11.20994 -10.92509 -10.75257 -10.61326 -10.59289 -10.35193 -10.23893 -10.11441 -9.89335 -9.48197 -9.35221 -9.11409 -8.77297 -8.60050 -7.73821 -6.82409 -5.74547 -3.06985 0.36103 0.82249 2.57257 2.88571 3.39672 3.44810 3.47593 3.52079 3.68380 4.17948 4.25375 4.37665 4.52511 4.60026 4.70061 4.86198 4.92858 5.00810 5.09017 5.15374 5.21128 5.27755 5.41016 5.46186 5.48027 5.50375 5.55400 5.58001 5.60996 5.71121 5.76632 5.78232 5.79412 5.95062 5.97003 6.04657 6.06830 6.17483 6.27468 6.36260 6.42128 6.57721 6.64796 6.69395 7.07261 7.24252 7.31656 7.45556 7.47174 7.57454 7.68661 8.00108 8.07090 9.06252 9.72878 10.62323 11.42214 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002435 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.011180 B =11495.207496 C =11764.188267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C 0.124 3.876 4 C -0.151 4.151 5 C -0.076 4.076 6 C -0.118 4.118 7 C 0.090 3.910 8 C 0.568 3.432 9 O -0.540 6.540 10 N -0.587 5.587 11 C 0.084 3.916 12 C 0.040 3.960 13 N -0.529 5.529 14 C 0.035 3.965 15 C 0.132 3.868 16 N -0.610 5.610 17 C -0.219 4.219 18 H 0.081 0.919 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.126 3.874 26 C 0.039 3.961 27 C 0.115 3.885 28 N -0.445 5.445 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.070 0.930 38 H 0.143 0.857 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.098 0.902 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.252 0.748 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.047 0.953 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -5.750 26.197 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.015 4.015 4 C -0.170 4.170 5 C -0.102 4.102 6 C -0.139 4.139 7 C -0.047 4.047 8 C 0.354 3.646 9 O -0.417 6.417 10 N -0.318 5.318 11 C -0.038 4.038 12 C -0.089 4.089 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.006 3.994 16 N -0.336 5.336 17 C -0.347 4.347 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.000 4.000 26 C -0.090 4.090 27 C -0.008 4.008 28 N -0.158 5.158 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.110 0.890 49 H 0.093 0.907 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.359 -5.424 25.372 26.308 hybrid contribution 1.778 0.580 -0.694 1.995 sum -2.581 -4.843 24.678 25.281 Atomic orbital electron populations 1.21702 0.93777 1.02025 1.02862 1.20531 0.97297 0.89802 1.03544 1.21518 0.93286 0.96504 0.90176 1.22195 0.98136 0.96931 0.99787 1.21640 0.97890 0.93179 0.97501 1.22104 0.96191 1.01879 0.93706 1.21195 0.96561 0.90922 0.96048 1.17892 0.78441 0.86777 0.81488 1.90774 1.57688 1.15530 1.77693 1.48026 1.50028 1.08699 1.25015 1.23081 1.03954 0.79392 0.97378 1.22491 0.96173 0.98121 0.92126 1.62063 1.55645 1.02195 1.05468 1.24270 0.98964 0.99547 0.84628 1.22939 0.94155 0.97340 0.85012 1.45836 1.01347 1.85479 1.00979 1.19061 0.92295 1.43031 0.80332 0.90154 1.24793 0.95375 1.02574 0.97866 1.69841 0.98157 1.56478 1.32418 0.86050 0.77849 0.77273 0.84628 1.20428 1.21789 1.21736 1.22648 0.91488 0.96552 0.89330 1.22555 1.00267 0.90225 0.95916 1.21876 0.97665 0.94385 0.86845 1.67441 1.23661 1.02680 1.21976 0.92104 0.92979 0.91242 0.89491 0.90191 0.84323 0.84002 0.83423 0.91196 0.84073 0.89896 0.94670 0.88379 0.95186 0.91407 0.93798 0.93716 0.94571 0.93507 0.89028 0.90687 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.77 37.15 0.36 -0.54 16 2 C -0.07 -0.43 6.33 -27.89 -0.18 -0.60 16 3 C 0.12 1.01 6.18 -82.60 -0.51 0.50 16 4 C -0.15 -1.00 9.72 -39.32 -0.38 -1.38 16 5 C -0.08 -0.54 10.17 -39.31 -0.40 -0.94 16 6 C -0.12 -1.18 9.63 -39.05 -0.38 -1.56 16 7 C 0.09 1.09 6.59 -83.02 -0.55 0.54 16 8 C 0.57 8.38 7.67 -12.18 -0.09 8.28 16 9 O -0.54 -9.29 15.82 5.35 0.08 -9.21 16 10 N -0.59 -8.31 3.01 -173.45 -0.52 -8.83 16 11 C 0.08 1.06 6.00 -3.60 -0.02 1.04 16 12 C 0.04 0.57 5.61 -3.70 -0.02 0.55 16 13 N -0.53 -8.55 4.76 -228.25 -1.09 -9.64 16 14 C 0.03 0.67 4.03 -69.93 -0.28 0.38 16 15 C 0.13 3.18 6.81 -2.84 -0.02 3.16 16 16 N -0.61 -15.97 3.70 -177.90 -0.66 -16.63 16 17 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 18 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.92 -27.95 11.39 55.49 0.63 -27.32 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.13 2.65 8.42 -2.98 -0.03 2.62 16 26 C 0.04 0.63 4.47 -3.70 -0.02 0.62 16 27 C 0.11 1.64 6.62 -3.60 -0.02 1.61 16 28 N -0.44 -4.69 5.64 -6.06 -0.03 -4.72 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.53 7.94 -51.93 -0.41 0.11 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.14 0.51 7.95 -52.49 -0.42 0.10 16 35 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 36 H 0.15 1.44 7.67 -52.49 -0.40 1.04 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.14 1.67 4.16 -79.54 -0.33 1.34 16 39 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.87 8.04 -51.93 -0.42 1.45 16 42 H 0.03 0.75 5.65 -51.93 -0.29 0.46 16 43 H 0.07 1.83 7.17 -51.93 -0.37 1.46 16 44 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.04 0.74 6.23 -51.93 -0.32 0.42 16 47 H 0.05 0.87 6.45 -51.93 -0.33 0.54 16 48 H 0.09 1.54 6.06 -51.93 -0.31 1.22 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.09 1.36 7.04 -51.93 -0.37 0.99 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -33.93 390.84 -11.24 -45.17 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.74 Total: 0.28 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.79 Total: 7.47 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -1.67 Total: -67.13 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.93 -11.24 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941440713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.284 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds