Wall clock time and date at job start Wed Apr 1 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46922 * 2 1 4 4 C 1.38171 * 120.49855 * 265.29290 * 3 2 1 5 5 N 1.31797 * 120.89169 * 180.29256 * 4 3 2 6 6 C 1.31831 * 122.05245 * 359.71500 * 5 4 3 7 7 C 1.38120 * 120.89114 * 359.97438 * 6 5 4 8 8 C 1.39795 * 120.50032 * 84.99862 * 3 2 1 9 9 C 1.48155 * 120.91918 * 0.02562 * 8 3 2 10 10 O 1.21504 * 120.00251 * 53.39366 * 9 8 3 11 11 N 1.34774 * 119.99222 * 233.39168 * 9 8 3 12 12 C 1.47078 * 120.87971 * 175.26164 * 11 9 8 13 13 C 1.53244 * 108.52586 * 231.20754 * 12 11 9 14 14 N 1.46897 * 109.34035 * 306.17222 * 13 12 11 15 15 C 1.46901 * 111.00217 * 187.24988 * 14 13 12 16 16 C 1.53936 * 113.73940 * 273.74111 * 15 14 13 17 17 N 1.47816 * 86.03457 * 222.07980 * 16 15 14 18 18 C 1.36935 * 134.45557 * 204.64062 * 17 16 15 19 19 H 1.08004 * 119.99801 * 179.86902 * 18 17 16 20 20 C 1.38808 * 120.00523 * 359.87409 * 18 17 16 21 21 N 1.31619 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00471 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46891 * 59.99806 * 22 20 18 24 24 H 1.48502 * 109.47583 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47257 * 300.00241 * 22 20 18 26 26 C 1.47580 * 91.04788 * 24.55100 * 17 16 15 27 27 C 1.46900 * 111.27041 * 63.09996 * 14 13 12 28 28 C 1.47084 * 120.88623 * 355.28550 * 11 9 8 29 29 H 1.08997 * 109.47034 * 299.99870 * 1 2 3 30 30 H 1.09000 * 109.47605 * 60.00174 * 1 2 3 31 31 H 1.09006 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47034 * 240.00130 * 2 1 3 33 33 H 1.09000 * 109.47605 * 119.99826 * 2 1 3 34 34 H 1.08005 * 119.55512 * 0.02958 * 4 3 2 35 35 H 1.07991 * 119.54937 * 180.02562 * 6 5 4 36 36 H 1.08004 * 120.49687 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.62965 * 111.49558 * 12 11 9 38 38 H 1.09000 * 109.63252 * 350.91770 * 12 11 9 39 39 H 1.08998 * 109.49271 * 186.20841 * 13 12 11 40 40 H 1.09005 * 109.48759 * 66.13034 * 13 12 11 41 41 H 1.09004 * 112.93830 * 45.33203 * 15 14 13 42 42 H 1.09003 * 113.77539 * 336.34374 * 16 15 14 43 43 H 1.09004 * 113.77387 * 107.74701 * 16 15 14 44 44 H 0.96997 * 120.00262 * 180.02562 * 21 20 18 45 45 H 1.08997 * 113.76447 * 221.14554 * 26 17 16 46 46 H 1.09003 * 113.86730 * 89.76833 * 26 17 16 47 47 H 1.08999 * 109.49233 * 56.85387 * 27 14 13 48 48 H 1.08998 * 109.49670 * 176.93809 * 27 14 13 49 49 H 1.08996 * 109.63121 * 248.50031 * 28 11 9 50 50 H 1.08994 * 109.62668 * 9.08732 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3582 2.0495 -1.1865 5 7 2.8035 3.2899 -1.1951 6 6 2.9536 3.9870 -0.0863 7 6 2.6457 3.4385 1.1434 8 6 2.1698 2.1248 1.1999 9 6 1.8272 1.4942 2.4960 10 8 2.3213 0.4272 2.8020 11 7 0.9674 2.1043 3.3357 12 6 0.5335 1.4492 4.5790 13 6 -0.9973 1.4858 4.6401 14 7 -1.4578 2.8709 4.4743 15 6 -2.9060 2.9745 4.6976 16 6 -3.7488 2.6885 3.4416 17 7 -4.5764 3.8395 3.8601 18 6 -5.8735 4.2189 3.6391 19 1 -6.2500 5.1335 4.0728 20 6 -6.7045 3.4279 2.8576 21 7 -6.2456 2.3135 2.3287 22 14 -8.4740 3.9450 2.5567 23 1 -8.4951 5.2663 1.8791 24 1 -9.1448 2.9374 1.6966 25 1 -9.1887 4.0430 3.8547 26 6 -3.4447 4.4140 4.6133 27 6 -1.0894 3.4006 3.1546 28 6 0.4376 3.4425 3.0328 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2504 1.5157 -2.1193 35 1 3.3215 5.0009 -0.1403 36 1 2.7707 4.0155 2.0478 37 1 0.9469 1.9804 5.4363 38 1 0.8755 0.4143 4.5863 39 1 -1.3320 1.1041 5.6046 40 1 -1.4080 0.8679 3.8415 41 1 -3.2393 2.4323 5.5826 42 1 -3.2125 2.8500 2.5065 43 1 -4.2740 1.7339 3.4728 44 1 -6.8261 1.7609 1.7823 45 1 -3.7276 4.8346 5.5782 46 1 -2.8179 5.0840 4.0247 47 1 -1.4988 2.7561 2.3768 48 1 -1.4910 4.4077 3.0419 49 1 0.8417 4.1654 3.7414 50 1 0.7162 3.7255 2.0177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941468120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:02 Heat of formation + Delta-G solvation = 80.307688 kcal Electronic energy + Delta-G solvation = -31276.295054 eV Core-core repulsion = 27305.960817 eV Total energy + Delta-G solvation = -3970.334237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21485 -39.80389 -38.78359 -36.74481 -34.80343 -34.03675 -32.71519 -31.80943 -31.00248 -29.98571 -28.20976 -26.56870 -25.01380 -24.83742 -24.41528 -23.82227 -22.67115 -21.84751 -21.24961 -19.68035 -18.68799 -17.68304 -17.09492 -16.83889 -16.52790 -15.79122 -15.55599 -15.23830 -15.18681 -14.95235 -14.83933 -14.40107 -14.20993 -13.95885 -13.92415 -13.86507 -13.64903 -13.10753 -12.78166 -12.46124 -12.30670 -12.27598 -12.15554 -11.87431 -11.65849 -11.46870 -11.25786 -11.20217 -11.04122 -10.91589 -10.75002 -10.63734 -10.46861 -10.22634 -9.95548 -9.93321 -9.54701 -9.54003 -9.23122 -8.89839 -8.79242 -7.90312 -6.90600 -5.81059 -3.13890 0.61886 0.78556 2.40702 2.74182 3.36312 3.40448 3.41760 3.47272 4.01229 4.08256 4.14012 4.44277 4.45193 4.49696 4.68520 4.82024 4.95247 4.99833 5.05501 5.14274 5.19764 5.20258 5.26127 5.30713 5.33492 5.39774 5.45581 5.54449 5.59026 5.60214 5.64696 5.65412 5.78835 5.84008 5.90365 6.01244 6.04588 6.10119 6.14509 6.25747 6.30569 6.33170 6.49747 6.57741 6.91988 7.14652 7.16527 7.30454 7.46608 7.55677 7.64184 7.86895 7.93216 8.99525 9.66381 10.54519 11.35560 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.002993 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.634222 B = 9351.997988 C =10027.290674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.084 4.084 4 C 0.101 3.899 5 N -0.470 5.470 6 C 0.091 3.909 7 C -0.143 4.143 8 C -0.078 4.078 9 C 0.565 3.435 10 O -0.532 6.532 11 N -0.599 5.599 12 C 0.119 3.881 13 C 0.042 3.958 14 N -0.528 5.528 15 C 0.035 3.965 16 C 0.133 3.867 17 N -0.608 5.608 18 C -0.224 4.224 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.127 3.873 27 C 0.037 3.963 28 C 0.103 3.897 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.100 0.900 42 H 0.030 0.970 43 H 0.069 0.931 44 H 0.254 0.746 45 H 0.045 0.955 46 H 0.036 0.964 47 H 0.048 0.952 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.374 -0.832 -1.343 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.087 4.087 4 C -0.056 4.056 5 N -0.179 5.179 6 C -0.065 4.065 7 C -0.163 4.163 8 C -0.089 4.089 9 C 0.352 3.648 10 O -0.409 6.409 11 N -0.332 5.332 12 C -0.004 4.004 13 C -0.087 4.087 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.006 3.994 17 N -0.335 5.335 18 C -0.351 4.351 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.000 4.000 27 C -0.092 4.092 28 C -0.019 4.019 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.160 0.840 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.112 0.888 49 H 0.098 0.902 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.738 -0.759 -1.722 19.828 hybrid contribution -1.712 -0.375 -0.123 1.757 sum 18.026 -1.134 -1.845 18.156 Atomic orbital electron populations 1.21717 0.93764 1.02460 1.02268 1.20734 0.96749 0.91356 1.04635 1.20996 0.97471 0.97717 0.92519 1.22695 0.94903 0.90781 0.97262 1.67558 1.11202 1.07523 1.31588 1.22719 0.96586 0.99987 0.87231 1.22329 0.99396 0.94158 1.00434 1.20170 1.00309 0.94600 0.93863 1.18199 0.79027 0.84441 0.83128 1.90752 1.52628 1.21815 1.75698 1.48123 1.44378 1.18689 1.22005 1.21808 0.94322 0.99023 0.85201 1.22415 0.93910 0.90263 1.02113 1.62035 1.15860 1.18760 1.28597 1.24304 0.83459 0.99216 1.00425 1.22933 0.89505 0.94179 0.92774 1.45798 1.05825 1.23721 1.58164 1.18964 0.84204 1.05497 1.26462 0.90229 1.24775 0.98419 0.97263 0.99863 1.69808 1.35306 1.14217 1.37564 0.86206 0.84295 0.77489 0.77815 1.21154 1.21550 1.21018 1.22644 0.88589 0.93396 0.95354 1.22573 0.93444 1.02047 0.91101 1.22210 0.94642 0.83208 1.01872 0.92771 0.92359 0.91727 0.90329 0.88738 0.82188 0.82098 0.84045 0.90494 0.88849 0.89434 0.94122 0.88219 0.95285 0.91311 0.93629 0.93638 0.94642 0.93408 0.88834 0.90168 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.24 16 2 C -0.10 -1.02 5.64 -27.88 -0.16 -1.17 16 3 C -0.08 -0.93 5.19 -104.06 -0.54 -1.47 16 4 C 0.10 1.04 10.84 -17.59 -0.19 0.85 16 5 N -0.47 -5.15 10.33 -13.31 -0.14 -5.29 16 6 C 0.09 0.83 11.17 -17.60 -0.20 0.64 16 7 C -0.14 -1.33 7.57 -39.03 -0.30 -1.62 16 8 C -0.08 -0.90 4.92 -104.65 -0.52 -1.41 16 9 C 0.56 7.30 6.68 -12.19 -0.08 7.22 16 10 O -0.53 -8.23 14.69 5.36 0.08 -8.15 16 11 N -0.60 -7.10 3.01 -173.46 -0.52 -7.62 16 12 C 0.12 1.36 6.58 -3.60 -0.02 1.34 16 13 C 0.04 0.54 5.61 -3.70 -0.02 0.52 16 14 N -0.53 -7.58 4.76 -228.25 -1.09 -8.66 16 15 C 0.03 0.62 4.03 -69.94 -0.28 0.33 16 16 C 0.13 3.01 6.81 -2.84 -0.02 2.99 16 17 N -0.61 -15.22 3.70 -177.91 -0.66 -15.88 16 18 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 21 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.13 2.49 8.42 -2.97 -0.03 2.46 16 27 C 0.04 0.51 4.47 -3.70 -0.02 0.49 16 28 C 0.10 1.12 5.69 -3.60 -0.02 1.10 16 29 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.09 1.17 6.02 -51.93 -0.31 0.85 16 34 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.14 1.01 7.39 -52.48 -0.39 0.63 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.10 7.09 -51.93 -0.37 0.74 16 39 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 1.78 8.04 -51.93 -0.42 1.36 16 42 H 0.03 0.68 5.65 -51.93 -0.29 0.39 16 43 H 0.07 1.77 7.17 -51.93 -0.37 1.40 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.67 6.23 -51.93 -0.32 0.35 16 47 H 0.05 0.77 6.45 -51.93 -0.33 0.43 16 48 H 0.09 1.36 6.06 -51.93 -0.31 1.04 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.88 4.85 -51.93 -0.25 0.63 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -32.74 388.72 -10.69 -43.43 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.56 Total: 1.46 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.27 Total: 4.38 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -1.77 Total: -63.91 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.74 -10.69 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941468120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.740 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds