Wall clock time and date at job start Wed Apr 1 2020 03:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46922 * 2 1 4 4 C 1.38171 * 120.49855 * 265.29290 * 3 2 1 5 5 N 1.31797 * 120.89169 * 180.29256 * 4 3 2 6 6 C 1.31831 * 122.05245 * 359.71500 * 5 4 3 7 7 C 1.38120 * 120.89114 * 359.97438 * 6 5 4 8 8 C 1.39795 * 120.50032 * 84.99862 * 3 2 1 9 9 C 1.48155 * 120.91918 * 0.02562 * 8 3 2 10 10 O 1.21504 * 120.00251 * 53.39366 * 9 8 3 11 11 N 1.34774 * 119.99222 * 233.39168 * 9 8 3 12 12 C 1.47078 * 120.87971 * 175.26164 * 11 9 8 13 13 C 1.53244 * 108.52586 * 231.20754 * 12 11 9 14 14 N 1.46897 * 109.34035 * 306.17222 * 13 12 11 15 15 C 1.46901 * 111.00217 * 187.24988 * 14 13 12 16 16 C 1.53936 * 113.73940 * 273.74111 * 15 14 13 17 17 N 1.47816 * 86.03457 * 222.07980 * 16 15 14 18 18 C 1.36935 * 134.45557 * 204.64062 * 17 16 15 19 19 H 1.08004 * 119.99801 * 179.86902 * 18 17 16 20 20 C 1.38808 * 120.00523 * 359.87409 * 18 17 16 21 21 N 1.31619 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00471 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46891 * 59.99806 * 22 20 18 24 24 H 1.48502 * 109.47583 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47257 * 300.00241 * 22 20 18 26 26 C 1.47580 * 91.04788 * 24.55100 * 17 16 15 27 27 C 1.46900 * 111.27041 * 63.09996 * 14 13 12 28 28 C 1.47084 * 120.88623 * 355.28550 * 11 9 8 29 29 H 1.08997 * 109.47034 * 299.99870 * 1 2 3 30 30 H 1.09000 * 109.47605 * 60.00174 * 1 2 3 31 31 H 1.09006 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47034 * 240.00130 * 2 1 3 33 33 H 1.09000 * 109.47605 * 119.99826 * 2 1 3 34 34 H 1.08005 * 119.55512 * 0.02958 * 4 3 2 35 35 H 1.07991 * 119.54937 * 180.02562 * 6 5 4 36 36 H 1.08004 * 120.49687 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.62965 * 111.49558 * 12 11 9 38 38 H 1.09000 * 109.63252 * 350.91770 * 12 11 9 39 39 H 1.08998 * 109.49271 * 186.20841 * 13 12 11 40 40 H 1.09005 * 109.48759 * 66.13034 * 13 12 11 41 41 H 1.09004 * 112.93830 * 45.33203 * 15 14 13 42 42 H 1.09003 * 113.77539 * 336.34374 * 16 15 14 43 43 H 1.09004 * 113.77387 * 107.74701 * 16 15 14 44 44 H 0.96997 * 120.00262 * 180.02562 * 21 20 18 45 45 H 1.08997 * 113.76447 * 221.14554 * 26 17 16 46 46 H 1.09003 * 113.86730 * 89.76833 * 26 17 16 47 47 H 1.08999 * 109.49233 * 56.85387 * 27 14 13 48 48 H 1.08998 * 109.49670 * 176.93809 * 27 14 13 49 49 H 1.08996 * 109.63121 * 248.50031 * 28 11 9 50 50 H 1.08994 * 109.62668 * 9.08732 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3582 2.0495 -1.1865 5 7 2.8035 3.2899 -1.1951 6 6 2.9536 3.9870 -0.0863 7 6 2.6457 3.4385 1.1434 8 6 2.1698 2.1248 1.1999 9 6 1.8272 1.4942 2.4960 10 8 2.3213 0.4272 2.8020 11 7 0.9674 2.1043 3.3357 12 6 0.5335 1.4492 4.5790 13 6 -0.9973 1.4858 4.6401 14 7 -1.4578 2.8709 4.4743 15 6 -2.9060 2.9745 4.6976 16 6 -3.7488 2.6885 3.4416 17 7 -4.5764 3.8395 3.8601 18 6 -5.8735 4.2189 3.6391 19 1 -6.2500 5.1335 4.0728 20 6 -6.7045 3.4279 2.8576 21 7 -6.2456 2.3135 2.3287 22 14 -8.4740 3.9450 2.5567 23 1 -8.4951 5.2663 1.8791 24 1 -9.1448 2.9374 1.6966 25 1 -9.1887 4.0430 3.8547 26 6 -3.4447 4.4140 4.6133 27 6 -1.0894 3.4006 3.1546 28 6 0.4376 3.4425 3.0328 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2504 1.5157 -2.1193 35 1 3.3215 5.0009 -0.1403 36 1 2.7707 4.0155 2.0478 37 1 0.9469 1.9804 5.4363 38 1 0.8755 0.4143 4.5863 39 1 -1.3320 1.1041 5.6046 40 1 -1.4080 0.8679 3.8415 41 1 -3.2393 2.4323 5.5826 42 1 -3.2125 2.8500 2.5065 43 1 -4.2740 1.7339 3.4728 44 1 -6.8261 1.7609 1.7823 45 1 -3.7276 4.8346 5.5782 46 1 -2.8179 5.0840 4.0247 47 1 -1.4988 2.7561 2.3768 48 1 -1.4910 4.4077 3.0419 49 1 0.8417 4.1654 3.7414 50 1 0.7162 3.7255 2.0177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941468120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:01 Heat of formation + Delta-G solvation = 58.691375 kcal Electronic energy + Delta-G solvation = -31277.232407 eV Core-core repulsion = 27305.960817 eV Total energy + Delta-G solvation = -3971.271590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11049 -40.94070 -40.00073 -38.03916 -35.65995 -35.33015 -34.04180 -33.30054 -32.01685 -30.80189 -29.79598 -28.01828 -26.64657 -25.92319 -25.27893 -24.85856 -24.30345 -22.83603 -22.25912 -20.86920 -19.97461 -18.77559 -18.68929 -17.92517 -17.56808 -16.96045 -16.83205 -16.58077 -16.25267 -16.13683 -16.03746 -15.60624 -15.44796 -15.18745 -14.83346 -14.75060 -14.64397 -14.40289 -13.87834 -13.81524 -13.58436 -13.43511 -13.37991 -13.18704 -13.11288 -12.80790 -12.71060 -12.38428 -12.30050 -12.24448 -12.11639 -12.06813 -11.89104 -11.76598 -11.42351 -11.39221 -10.85604 -10.75712 -10.37776 -9.98394 -9.89751 -9.28782 -8.87769 -7.92342 -5.26346 -0.19929 0.04999 1.43281 1.43587 1.46732 1.52838 1.81320 2.43643 2.70006 2.81576 3.17798 3.27772 3.45015 3.47478 3.68790 3.74440 3.80687 3.84051 3.93515 3.95416 4.08323 4.18857 4.24133 4.31196 4.33019 4.35300 4.41115 4.45179 4.58185 4.61497 4.67647 4.73885 4.77039 4.80276 4.84515 4.87034 4.91583 4.97316 4.98329 5.03760 5.19167 5.20833 5.25010 5.33098 5.35953 5.47247 5.60128 5.88842 6.00552 6.09033 6.22134 6.88626 6.88855 6.90213 7.58806 8.53785 9.23542 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.002993 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.634222 B = 9351.997988 C =10027.290674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.099 4.099 4 C 0.097 3.903 5 N -0.489 5.489 6 C 0.092 3.908 7 C -0.137 4.137 8 C -0.098 4.098 9 C 0.565 3.435 10 O -0.563 6.563 11 N -0.600 5.600 12 C 0.124 3.876 13 C 0.044 3.956 14 N -0.512 5.512 15 C 0.065 3.935 16 C 0.133 3.867 17 N -0.639 5.639 18 C -0.234 4.234 19 H 0.086 0.914 20 C -0.067 4.067 21 N -0.956 5.956 22 Si 0.978 3.022 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.274 1.274 26 C 0.130 3.870 27 C 0.039 3.961 28 C 0.113 3.887 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.180 0.820 35 H 0.193 0.807 36 H 0.167 0.833 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.016 0.984 41 H 0.104 0.896 42 H 0.019 0.981 43 H 0.028 0.972 44 H 0.247 0.753 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.090 0.910 49 H 0.108 0.892 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.827 1.129 -0.759 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.060 4.060 5 N -0.198 5.198 6 C -0.064 4.064 7 C -0.157 4.157 8 C -0.109 4.109 9 C 0.353 3.647 10 O -0.443 6.443 11 N -0.332 5.332 12 C 0.002 3.998 13 C -0.085 4.085 14 N -0.235 5.235 15 C -0.045 4.045 16 C 0.006 3.994 17 N -0.366 5.366 18 C -0.362 4.362 19 H 0.104 0.896 20 C -0.260 4.260 21 N -0.605 5.605 22 Si 0.806 3.194 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.200 1.200 26 C 0.005 3.995 27 C -0.090 4.090 28 C -0.009 4.009 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.197 0.803 35 H 0.210 0.790 36 H 0.184 0.816 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.035 0.965 41 H 0.122 0.878 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.036 0.964 48 H 0.109 0.891 49 H 0.126 0.874 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.219 1.236 -1.113 21.284 hybrid contribution -2.113 -0.958 -0.304 2.340 sum 19.106 0.277 -1.417 19.161 Atomic orbital electron populations 1.21666 0.94547 1.02400 1.01102 1.20656 0.95901 0.91572 1.04708 1.21103 0.98232 0.97886 0.92957 1.22984 0.94438 0.90856 0.97681 1.67620 1.11737 1.07844 1.32585 1.23271 0.95458 1.01054 0.86623 1.22588 0.98266 0.93228 1.01629 1.20252 1.01621 0.95836 0.93173 1.18442 0.78717 0.83979 0.83513 1.90731 1.53994 1.23159 1.76380 1.48203 1.43983 1.19038 1.21933 1.21782 0.92821 0.99310 0.85844 1.22478 0.95088 0.88842 1.02092 1.62089 1.12956 1.19653 1.28840 1.23850 0.85022 0.97808 0.97772 1.22840 0.89884 0.91865 0.94780 1.46181 1.06354 1.25179 1.58926 1.19401 0.85794 1.05392 1.25657 0.89620 1.25617 1.02489 0.97513 1.00350 1.70020 1.36374 1.15435 1.38626 0.85165 0.79511 0.77005 0.77757 1.20260 1.22260 1.20009 1.22789 0.86919 0.94388 0.95361 1.22556 0.95747 1.00975 0.89694 1.22237 0.92032 0.83162 1.03453 0.95426 0.91871 0.91272 0.88019 0.90802 0.80315 0.78995 0.81586 0.88325 0.89279 0.87844 0.96539 0.87791 0.96311 0.95374 0.94463 0.92278 0.92934 0.96391 0.89135 0.87404 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.89 71.98 0.71 -2.51 16 2 C -0.09 -1.91 5.64 29.85 0.17 -1.75 16 3 C -0.10 -2.14 5.19 -19.50 -0.10 -2.24 16 4 C 0.10 1.87 10.84 84.68 0.92 2.79 16 5 N -0.49 -9.79 10.33 -196.01 -2.03 -11.81 16 6 C 0.09 1.44 11.17 84.66 0.95 2.38 16 7 C -0.14 -2.21 7.57 22.63 0.17 -2.04 16 8 C -0.10 -2.14 4.92 -19.88 -0.10 -2.24 16 9 C 0.56 14.30 6.68 86.88 0.58 14.88 16 10 O -0.56 -17.56 14.69 -3.73 -0.05 -17.62 16 11 N -0.60 -13.44 3.01 -820.99 -2.47 -15.91 16 12 C 0.12 2.68 6.58 86.35 0.57 3.25 16 13 C 0.04 1.09 5.61 86.39 0.49 1.58 16 14 N -0.51 -14.01 4.76 -876.05 -4.17 -18.18 16 15 C 0.06 2.28 4.03 46.67 0.19 2.47 16 16 C 0.13 6.25 6.81 86.44 0.59 6.84 16 17 N -0.64 -32.25 3.70 -716.78 -2.65 -34.91 16 18 C -0.23 -13.05 10.70 84.03 0.90 -12.15 16 19 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.96 -58.14 11.39 21.65 0.25 -57.89 16 22 Si 0.98 45.65 29.55 68.60 2.03 47.67 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.13 4.95 8.42 86.48 0.73 5.68 16 27 C 0.04 1.04 4.47 86.39 0.39 1.43 16 28 C 0.11 2.19 5.69 86.35 0.49 2.69 16 29 H 0.03 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.10 1.62 8.07 -2.39 -0.02 1.60 16 33 H 0.07 1.89 6.02 -2.39 -0.01 1.87 16 34 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.19 1.66 8.06 -2.92 -0.02 1.63 16 36 H 0.17 1.76 7.39 -2.91 -0.02 1.74 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.06 7.09 -2.39 -0.02 2.04 16 39 H 0.10 2.28 8.04 -2.39 -0.02 2.26 16 40 H 0.02 0.49 8.14 -2.38 -0.02 0.48 16 41 H 0.10 3.62 8.04 -2.39 -0.02 3.60 16 42 H 0.02 0.93 5.65 -2.39 -0.01 0.92 16 43 H 0.03 1.53 7.17 -2.38 -0.02 1.51 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.05 1.86 6.23 -2.39 -0.01 1.84 16 47 H 0.02 0.59 6.45 -2.39 -0.02 0.58 16 48 H 0.09 2.49 6.06 -2.39 -0.01 2.48 16 49 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.10 1.75 4.85 -2.39 -0.01 1.74 16 Total: -1.00 -73.27 388.72 -0.05 -73.32 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.95 Total: 17.61 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 8.10 Total: 17.71 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -11.07 Total: -138.70 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.05 Total: -17.62 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.27 -0.05 -73.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941468120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.012 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds