Wall clock time and date at job start Wed Apr 1 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47447 * 2 1 4 4 C 1.38633 * 120.47215 * 266.22451 * 3 2 1 5 5 C 1.38579 * 118.48924 * 180.26620 * 4 3 2 6 6 C 1.38599 * 119.35107 * 359.73996 * 5 4 3 7 7 N 1.31495 * 120.90261 * 359.97438 * 6 5 4 8 8 C 1.32744 * 121.64232 * 0.02562 * 7 6 5 9 9 C 1.48164 * 119.72190 * 179.97438 * 8 7 6 10 10 O 1.21517 * 119.99888 * 255.78598 * 9 8 7 11 11 N 1.34771 * 120.00183 * 75.78340 * 9 8 7 12 12 C 1.47079 * 120.88301 * 355.00654 * 11 9 8 13 13 C 1.53234 * 108.52500 * 231.20393 * 12 11 9 14 14 N 1.46899 * 109.34223 * 306.17138 * 13 12 11 15 15 C 1.46897 * 111.00140 * 187.24659 * 14 13 12 16 16 C 1.53941 * 113.74820 * 273.74588 * 15 14 13 17 17 N 1.47817 * 86.03648 * 222.08563 * 16 15 14 18 18 C 1.36932 * 134.45468 * 204.64765 * 17 16 15 19 19 H 1.08006 * 120.00391 * 179.86423 * 18 17 16 20 20 C 1.38817 * 120.00035 * 359.85852 * 18 17 16 21 21 N 1.31623 * 120.00007 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99945 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47222 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47230 * 120.00288 * 22 20 18 25 25 H 1.48500 * 109.47170 * 239.99977 * 22 20 18 26 26 C 1.47577 * 91.04925 * 24.54665 * 17 16 15 27 27 C 1.46901 * 111.26473 * 63.10197 * 14 13 12 28 28 C 1.47086 * 120.88308 * 175.03078 * 11 9 8 29 29 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46591 * 300.00342 * 1 2 3 31 31 H 1.09001 * 109.46909 * 59.99563 * 1 2 3 32 32 H 1.08997 * 109.47015 * 240.00055 * 2 1 3 33 33 H 1.09002 * 109.47143 * 119.99691 * 2 1 3 34 34 H 1.08002 * 120.75332 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.32432 * 179.72439 * 5 4 3 36 36 H 1.08006 * 119.54988 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.62460 * 111.49329 * 12 11 9 38 38 H 1.09003 * 109.62822 * 350.92024 * 12 11 9 39 39 H 1.08996 * 109.49517 * 186.21045 * 13 12 11 40 40 H 1.09007 * 109.48863 * 66.13034 * 13 12 11 41 41 H 1.09003 * 112.94199 * 45.33587 * 15 14 13 42 42 H 1.09009 * 113.76315 * 336.34222 * 16 15 14 43 43 H 1.08996 * 113.77589 * 107.74228 * 16 15 14 44 44 H 0.96999 * 119.99985 * 180.02562 * 21 20 18 45 45 H 1.09004 * 113.76618 * 221.15294 * 26 17 16 46 46 H 1.08996 * 113.87374 * 89.77809 * 26 17 16 47 47 H 1.08997 * 109.49653 * 56.85866 * 27 14 13 48 48 H 1.09004 * 109.48917 * 176.93365 * 27 14 13 49 49 H 1.08995 * 109.62871 * 248.50970 * 28 11 9 50 50 H 1.09003 * 109.62332 * 9.08170 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3410 2.0574 -1.1923 5 6 2.8051 3.3623 -1.1440 6 6 2.9411 3.9900 0.0841 7 7 2.6356 3.3646 1.1997 8 6 2.1880 2.1149 1.1974 9 6 1.8571 1.4507 2.4798 10 8 2.6122 0.6210 2.9468 11 7 0.7187 1.7667 3.1284 12 6 -0.1548 2.8440 2.6390 13 6 -0.4484 3.7986 3.8012 14 7 -0.9820 3.0336 4.9361 15 6 -1.4367 3.9296 6.0077 16 6 -0.3219 4.3418 6.9859 17 7 -1.3223 4.1320 8.0537 18 6 -1.4840 4.6150 9.3247 19 1 -2.3275 4.2975 9.9199 20 6 -0.5638 5.5128 9.8484 21 7 0.4639 5.9001 9.1229 22 14 -0.7841 6.1712 11.5825 23 1 -2.0097 5.5855 12.1824 24 1 0.3955 5.8022 12.4056 25 1 -0.9134 7.6499 11.5379 26 6 -2.0777 3.1954 7.1992 27 6 0.0051 2.0692 5.4397 28 6 0.3172 1.0438 4.3447 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2261 1.5466 -2.1369 35 1 3.0585 3.8849 -2.0546 36 1 3.3021 5.0071 0.1254 37 1 -1.0881 2.4192 2.2693 38 1 0.3467 3.3864 1.8374 39 1 -1.1818 4.5407 3.4859 40 1 0.4717 4.3003 4.1011 41 1 -2.0285 4.7673 5.6386 42 1 0.5123 3.6410 7.0218 43 1 -0.0037 5.3787 6.8779 44 1 1.1071 6.5272 9.4890 45 1 -3.1590 3.3187 7.2612 46 1 -1.7620 2.1567 7.2968 47 1 0.9188 2.5950 5.7168 48 1 -0.3994 1.5572 6.3129 49 1 -0.5706 0.4459 4.1391 50 1 1.1309 0.3959 4.6709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941468124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:52 Heat of formation + Delta-G solvation = 79.797476 kcal Electronic energy + Delta-G solvation = -30929.644677 eV Core-core repulsion = 26959.288315 eV Total energy + Delta-G solvation = -3970.356361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.18357 -39.73125 -38.63444 -36.62216 -35.06406 -33.78963 -32.58820 -31.81022 -31.10086 -30.14834 -28.10809 -26.38173 -25.08407 -24.82128 -24.56397 -23.52755 -22.67168 -21.89453 -21.27611 -19.74228 -18.52138 -17.68228 -17.15607 -16.78420 -16.55482 -15.98310 -15.50079 -15.04892 -15.02836 -14.85542 -14.70286 -14.43399 -14.17793 -14.06218 -13.86311 -13.69236 -13.52575 -13.14598 -12.89928 -12.54174 -12.44206 -12.25516 -11.92912 -11.77090 -11.71790 -11.56500 -11.35316 -11.23186 -10.94491 -10.81049 -10.65626 -10.58462 -10.34558 -10.14441 -10.11688 -9.87560 -9.65290 -9.47775 -9.26809 -8.81500 -8.71745 -7.80448 -6.83450 -5.74813 -3.07529 0.56208 0.87961 2.35511 2.78074 3.35294 3.39729 3.44789 3.47686 3.93685 4.14187 4.21412 4.37600 4.50758 4.57229 4.58534 4.88064 4.90195 4.97637 5.01167 5.06853 5.09912 5.21522 5.27228 5.34450 5.38309 5.43456 5.51140 5.52328 5.57003 5.61802 5.69079 5.71163 5.76209 5.87197 5.90674 5.91581 5.98377 6.10152 6.21374 6.24908 6.37713 6.41806 6.58132 6.65405 7.02840 7.23532 7.25253 7.40095 7.52694 7.55031 7.64362 7.96161 7.99571 9.05757 9.72451 10.61351 11.41847 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.002482 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.100190 B =11276.433125 C =11821.414963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.096 4.096 4 C -0.076 4.076 5 C -0.158 4.158 6 C 0.097 3.903 7 N -0.453 5.453 8 C 0.100 3.900 9 C 0.582 3.418 10 O -0.530 6.530 11 N -0.595 5.595 12 C 0.116 3.884 13 C 0.044 3.956 14 N -0.529 5.529 15 C 0.035 3.965 16 C 0.133 3.867 17 N -0.610 5.610 18 C -0.221 4.221 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.127 3.873 27 C 0.037 3.963 28 C 0.117 3.883 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.252 0.748 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.050 0.950 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -8.629 -25.745 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.098 4.098 4 C -0.101 4.101 5 C -0.178 4.178 6 C -0.062 4.062 7 N -0.163 5.163 8 C -0.040 4.040 9 C 0.368 3.632 10 O -0.406 6.406 11 N -0.327 5.327 12 C -0.007 4.007 13 C -0.085 4.085 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.006 3.994 17 N -0.336 5.336 18 C -0.348 4.348 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.000 4.000 27 C -0.091 4.091 28 C -0.005 4.005 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.117 0.883 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.112 0.888 49 H 0.094 0.906 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.665 -8.730 -24.538 26.053 hybrid contribution 0.736 0.632 0.425 1.060 sum 1.401 -8.097 -24.113 25.475 Atomic orbital electron populations 1.21764 0.93908 1.02423 1.02357 1.20641 0.96766 0.91431 1.04175 1.20791 0.98780 0.97678 0.92585 1.21466 0.96204 0.94642 0.97829 1.22329 0.99933 0.95640 0.99859 1.22872 0.95990 1.00074 0.87252 1.67732 1.09273 1.07666 1.31590 1.20915 0.98544 0.91181 0.93340 1.17880 0.80946 0.81653 0.82770 1.90798 1.48741 1.34617 1.66461 1.48078 1.21993 1.35601 1.27057 1.21881 0.93887 0.88125 0.96780 1.22346 0.99605 0.95176 0.91391 1.62046 1.37058 1.17621 1.08588 1.24281 0.99345 0.94829 0.88909 1.22944 0.91490 1.00433 0.84565 1.45830 1.26334 1.48587 1.12874 1.19051 1.07489 1.19910 0.88385 0.90156 1.24797 0.97116 1.00105 0.98537 1.69839 1.14405 1.36400 1.36145 0.86052 0.77291 0.78507 0.83954 1.20437 1.21775 1.21729 1.22643 0.96007 0.93555 0.87758 1.22584 0.95329 0.94270 0.96950 1.21874 1.00718 0.94531 0.83361 0.91773 0.92250 0.92442 0.90272 0.89729 0.84243 0.84254 0.81961 0.90698 0.90032 0.89693 0.93720 0.88315 0.95105 0.91322 0.93750 0.93706 0.94564 0.93225 0.88829 0.90551 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.90 37.16 0.37 -0.72 16 2 C -0.09 -0.79 5.62 -27.88 -0.16 -0.94 16 3 C -0.10 -0.94 5.18 -104.09 -0.54 -1.48 16 4 C -0.08 -0.55 9.84 -39.31 -0.39 -0.94 16 5 C -0.16 -1.07 10.11 -39.32 -0.40 -1.47 16 6 C 0.10 0.87 11.18 -17.56 -0.20 0.67 16 7 N -0.45 -5.73 9.51 -9.80 -0.09 -5.82 16 8 C 0.10 1.26 4.92 -83.01 -0.41 0.85 16 9 C 0.58 8.58 6.09 -12.19 -0.07 8.50 16 10 O -0.53 -9.41 15.90 5.35 0.09 -9.33 16 11 N -0.59 -7.96 3.01 -173.46 -0.52 -8.48 16 12 C 0.12 1.37 6.48 -3.61 -0.02 1.34 16 13 C 0.04 0.60 5.61 -3.70 -0.02 0.58 16 14 N -0.53 -8.16 4.76 -228.25 -1.09 -9.25 16 15 C 0.03 0.66 4.03 -69.92 -0.28 0.37 16 16 C 0.13 3.14 6.81 -2.84 -0.02 3.12 16 17 N -0.61 -15.78 3.70 -177.87 -0.66 -16.44 16 18 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 19 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -27.85 11.39 55.49 0.63 -27.21 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.13 2.60 8.42 -2.97 -0.03 2.57 16 27 C 0.04 0.58 4.47 -3.70 -0.02 0.57 16 28 C 0.12 1.57 6.61 -3.60 -0.02 1.55 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.08 0.91 6.76 -51.93 -0.35 0.56 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 37 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.08 0.93 5.87 -51.93 -0.30 0.62 16 39 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 40 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.10 1.83 8.04 -51.93 -0.42 1.41 16 42 H 0.03 0.77 5.65 -51.92 -0.29 0.47 16 43 H 0.07 1.84 7.16 -51.93 -0.37 1.46 16 44 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.72 6.23 -51.93 -0.32 0.40 16 47 H 0.05 0.91 6.45 -51.93 -0.33 0.57 16 48 H 0.09 1.51 6.06 -51.93 -0.31 1.19 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -34.56 393.24 -10.88 -45.45 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.68 Total: -0.10 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.46 Total: 7.80 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -1.73 Total: -67.20 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.56 -10.88 -45.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941468124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.244 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds