Wall clock time and date at job start Wed Apr 1 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47447 * 2 1 4 4 C 1.38633 * 120.47215 * 266.22451 * 3 2 1 5 5 C 1.38579 * 118.48924 * 180.26620 * 4 3 2 6 6 C 1.38599 * 119.35107 * 359.73996 * 5 4 3 7 7 N 1.31495 * 120.90261 * 359.97438 * 6 5 4 8 8 C 1.32744 * 121.64232 * 0.02562 * 7 6 5 9 9 C 1.48164 * 119.72190 * 179.97438 * 8 7 6 10 10 O 1.21517 * 119.99888 * 255.78598 * 9 8 7 11 11 N 1.34771 * 120.00183 * 75.78340 * 9 8 7 12 12 C 1.47079 * 120.88301 * 355.00654 * 11 9 8 13 13 C 1.53234 * 108.52500 * 231.20393 * 12 11 9 14 14 N 1.46899 * 109.34223 * 306.17138 * 13 12 11 15 15 C 1.46897 * 111.00140 * 187.24659 * 14 13 12 16 16 C 1.53941 * 113.74820 * 273.74588 * 15 14 13 17 17 N 1.47817 * 86.03648 * 222.08563 * 16 15 14 18 18 C 1.36932 * 134.45468 * 204.64765 * 17 16 15 19 19 H 1.08006 * 120.00391 * 179.86423 * 18 17 16 20 20 C 1.38817 * 120.00035 * 359.85852 * 18 17 16 21 21 N 1.31623 * 120.00007 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99945 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47222 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47230 * 120.00288 * 22 20 18 25 25 H 1.48500 * 109.47170 * 239.99977 * 22 20 18 26 26 C 1.47577 * 91.04925 * 24.54665 * 17 16 15 27 27 C 1.46901 * 111.26473 * 63.10197 * 14 13 12 28 28 C 1.47086 * 120.88308 * 175.03078 * 11 9 8 29 29 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46591 * 300.00342 * 1 2 3 31 31 H 1.09001 * 109.46909 * 59.99563 * 1 2 3 32 32 H 1.08997 * 109.47015 * 240.00055 * 2 1 3 33 33 H 1.09002 * 109.47143 * 119.99691 * 2 1 3 34 34 H 1.08002 * 120.75332 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.32432 * 179.72439 * 5 4 3 36 36 H 1.08006 * 119.54988 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.62460 * 111.49329 * 12 11 9 38 38 H 1.09003 * 109.62822 * 350.92024 * 12 11 9 39 39 H 1.08996 * 109.49517 * 186.21045 * 13 12 11 40 40 H 1.09007 * 109.48863 * 66.13034 * 13 12 11 41 41 H 1.09003 * 112.94199 * 45.33587 * 15 14 13 42 42 H 1.09009 * 113.76315 * 336.34222 * 16 15 14 43 43 H 1.08996 * 113.77589 * 107.74228 * 16 15 14 44 44 H 0.96999 * 119.99985 * 180.02562 * 21 20 18 45 45 H 1.09004 * 113.76618 * 221.15294 * 26 17 16 46 46 H 1.08996 * 113.87374 * 89.77809 * 26 17 16 47 47 H 1.08997 * 109.49653 * 56.85866 * 27 14 13 48 48 H 1.09004 * 109.48917 * 176.93365 * 27 14 13 49 49 H 1.08995 * 109.62871 * 248.50970 * 28 11 9 50 50 H 1.09003 * 109.62332 * 9.08170 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3410 2.0574 -1.1923 5 6 2.8051 3.3623 -1.1440 6 6 2.9411 3.9900 0.0841 7 7 2.6356 3.3646 1.1997 8 6 2.1880 2.1149 1.1974 9 6 1.8571 1.4507 2.4798 10 8 2.6122 0.6210 2.9468 11 7 0.7187 1.7667 3.1284 12 6 -0.1548 2.8440 2.6390 13 6 -0.4484 3.7986 3.8012 14 7 -0.9820 3.0336 4.9361 15 6 -1.4367 3.9296 6.0077 16 6 -0.3219 4.3418 6.9859 17 7 -1.3223 4.1320 8.0537 18 6 -1.4840 4.6150 9.3247 19 1 -2.3275 4.2975 9.9199 20 6 -0.5638 5.5128 9.8484 21 7 0.4639 5.9001 9.1229 22 14 -0.7841 6.1712 11.5825 23 1 -2.0097 5.5855 12.1824 24 1 0.3955 5.8022 12.4056 25 1 -0.9134 7.6499 11.5379 26 6 -2.0777 3.1954 7.1992 27 6 0.0051 2.0692 5.4397 28 6 0.3172 1.0438 4.3447 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2261 1.5466 -2.1369 35 1 3.0585 3.8849 -2.0546 36 1 3.3021 5.0071 0.1254 37 1 -1.0881 2.4192 2.2693 38 1 0.3467 3.3864 1.8374 39 1 -1.1818 4.5407 3.4859 40 1 0.4717 4.3003 4.1011 41 1 -2.0285 4.7673 5.6386 42 1 0.5123 3.6410 7.0218 43 1 -0.0037 5.3787 6.8779 44 1 1.1071 6.5272 9.4890 45 1 -3.1590 3.3187 7.2612 46 1 -1.7620 2.1567 7.2968 47 1 0.9188 2.5950 5.7168 48 1 -0.3994 1.5572 6.3129 49 1 -0.5706 0.4459 4.1391 50 1 1.1309 0.3959 4.6709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941468124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:51 Heat of formation + Delta-G solvation = 55.882691 kcal Electronic energy + Delta-G solvation = -30930.681699 eV Core-core repulsion = 26959.288315 eV Total energy + Delta-G solvation = -3971.393384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07593 -40.94883 -39.92575 -38.02970 -35.72220 -35.26795 -33.85187 -33.26389 -32.20030 -30.86336 -29.78095 -27.91125 -26.64552 -26.02563 -25.22667 -24.70499 -24.32403 -22.84861 -22.24731 -20.96390 -19.95563 -18.79340 -18.72397 -17.92258 -17.61659 -16.97691 -16.96889 -16.63787 -16.21527 -16.00843 -15.83293 -15.59579 -15.53929 -15.09007 -14.76139 -14.72657 -14.42185 -14.15051 -13.91802 -13.87543 -13.64516 -13.46232 -13.34374 -13.20932 -13.09468 -12.84581 -12.74643 -12.36039 -12.33813 -12.21667 -12.06704 -11.97027 -11.88975 -11.78181 -11.42747 -11.32242 -10.88527 -10.77905 -10.43818 -9.98622 -9.90468 -9.30720 -8.89198 -7.92904 -5.27494 -0.12843 0.25919 1.29002 1.42524 1.44037 1.54525 1.76978 2.42695 2.66804 2.78185 3.09779 3.26946 3.46488 3.54547 3.77111 3.80637 3.83162 3.94190 3.97201 4.05063 4.05856 4.17799 4.31103 4.33546 4.36508 4.40081 4.44140 4.48875 4.55504 4.57842 4.65719 4.78003 4.82467 4.83288 4.90257 4.95911 4.97288 5.03045 5.03915 5.14088 5.20254 5.27053 5.28685 5.33194 5.37825 5.46227 5.66253 5.87696 5.97629 6.08250 6.20977 6.79523 6.87581 6.90755 7.57724 8.52992 9.23437 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.002482 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.100190 B =11276.433125 C =11821.414963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.099 4.099 4 C -0.071 4.071 5 C -0.139 4.139 6 C 0.083 3.917 7 N -0.493 5.493 8 C 0.067 3.933 9 C 0.579 3.421 10 O -0.574 6.574 11 N -0.596 5.596 12 C 0.126 3.874 13 C 0.043 3.957 14 N -0.510 5.510 15 C 0.067 3.933 16 C 0.132 3.868 17 N -0.640 5.640 18 C -0.230 4.230 19 H 0.088 0.912 20 C -0.072 4.072 21 N -0.957 5.957 22 Si 0.981 3.019 23 H -0.261 1.261 24 H -0.295 1.295 25 H -0.291 1.291 26 C 0.130 3.870 27 C 0.044 3.956 28 C 0.125 3.875 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.177 0.823 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.015 0.985 41 H 0.110 0.890 42 H 0.014 0.986 43 H 0.030 0.970 44 H 0.246 0.754 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.013 0.987 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 -9.036 -28.913 30.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.102 4.102 4 C -0.096 4.096 5 C -0.158 4.158 6 C -0.076 4.076 7 N -0.204 5.204 8 C -0.071 4.071 9 C 0.366 3.634 10 O -0.453 6.453 11 N -0.327 5.327 12 C 0.004 3.996 13 C -0.085 4.085 14 N -0.234 5.234 15 C -0.043 4.043 16 C 0.005 3.995 17 N -0.367 5.367 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.265 4.265 21 N -0.606 5.606 22 Si 0.809 3.191 23 H -0.185 1.185 24 H -0.223 1.223 25 H -0.218 1.218 26 C 0.005 3.995 27 C -0.085 4.085 28 C 0.002 3.998 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.194 0.806 35 H 0.197 0.803 36 H 0.199 0.801 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.034 0.966 41 H 0.128 0.872 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.032 0.968 48 H 0.108 0.892 49 H 0.121 0.879 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.185 -9.159 -27.733 29.230 hybrid contribution 1.343 0.758 1.307 2.022 sum 0.158 -8.400 -26.426 27.729 Atomic orbital electron populations 1.21735 0.92944 1.02968 1.02328 1.20657 0.97578 0.90795 1.03852 1.20995 0.98581 0.98032 0.92564 1.21915 0.94751 0.94830 0.98121 1.22752 0.97384 0.95372 1.00288 1.23345 0.95891 1.00953 0.87383 1.67611 1.10723 1.08184 1.33899 1.20646 1.01486 0.91946 0.92975 1.18375 0.80390 0.81077 0.83522 1.90752 1.50008 1.36691 1.67891 1.48181 1.22069 1.35736 1.26728 1.21910 0.94629 0.87304 0.95753 1.22465 0.98874 0.95955 0.91241 1.62105 1.36895 1.16690 1.07671 1.23862 0.96474 0.95016 0.88925 1.22838 0.92349 0.97793 0.86542 1.46231 1.27657 1.49979 1.12802 1.19489 1.07372 1.19393 0.89599 0.89449 1.25694 0.97154 1.00993 1.02637 1.70055 1.15407 1.37303 1.37861 0.84971 0.77501 0.77529 0.79110 1.18520 1.22271 1.21776 1.22788 0.96573 0.93303 0.86819 1.22481 0.93657 0.94430 0.97887 1.21773 1.01350 0.93764 0.82873 0.90979 0.93884 0.90730 0.87791 0.92783 0.80576 0.80295 0.80091 0.88113 0.89294 0.87380 0.96615 0.87240 0.96851 0.95198 0.94492 0.91902 0.93294 0.96827 0.89209 0.87893 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.90 71.98 0.71 -1.09 16 2 C -0.09 -1.42 5.62 29.85 0.17 -1.25 16 3 C -0.10 -1.78 5.18 -19.52 -0.10 -1.88 16 4 C -0.07 -0.76 9.84 22.45 0.22 -0.54 16 5 C -0.14 -1.36 10.11 22.44 0.23 -1.13 16 6 C 0.08 1.35 11.18 84.83 0.95 2.30 16 7 N -0.49 -12.47 9.51 -184.91 -1.76 -14.23 16 8 C 0.07 1.71 4.92 41.89 0.21 1.91 16 9 C 0.58 17.77 6.09 86.88 0.53 18.30 16 10 O -0.57 -21.76 15.90 -3.77 -0.06 -21.82 16 11 N -0.60 -16.19 3.01 -820.99 -2.47 -18.66 16 12 C 0.13 2.84 6.48 86.35 0.56 3.39 16 13 C 0.04 1.17 5.61 86.38 0.48 1.65 16 14 N -0.51 -15.49 4.76 -876.04 -4.17 -19.65 16 15 C 0.07 2.48 4.03 46.67 0.19 2.67 16 16 C 0.13 6.56 6.81 86.44 0.59 7.15 16 17 N -0.64 -33.71 3.70 -716.66 -2.65 -36.36 16 18 C -0.23 -13.23 10.70 84.04 0.90 -12.33 16 19 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 20 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.96 -60.31 11.39 21.65 0.25 -60.06 16 22 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 C 0.13 5.23 8.42 86.49 0.73 5.96 16 27 C 0.04 1.43 4.47 86.38 0.39 1.81 16 28 C 0.12 3.40 6.61 86.35 0.57 3.97 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.68 8.09 -2.38 -0.02 0.66 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.05 1.18 6.76 -2.39 -0.02 1.17 16 34 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 36 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.09 1.95 5.87 -2.39 -0.01 1.93 16 39 H 0.11 2.45 8.04 -2.39 -0.02 2.44 16 40 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.11 3.92 8.04 -2.39 -0.02 3.90 16 42 H 0.01 0.73 5.65 -2.38 -0.01 0.71 16 43 H 0.03 1.70 7.16 -2.39 -0.02 1.68 16 44 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 46 H 0.05 1.88 6.23 -2.39 -0.01 1.87 16 47 H 0.01 0.54 6.45 -2.39 -0.02 0.52 16 48 H 0.09 2.95 6.06 -2.38 -0.01 2.94 16 49 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.08 2.48 7.04 -2.39 -0.02 2.46 16 Total: -1.00 -80.61 393.24 -0.11 -80.72 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.94 Total: 13.85 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 7.78 Total: 27.10 kcal Atomic # 7 Polarization: -138.16 SS G_CDS: -10.80 Total: -148.97 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -80.61 -0.11 -80.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941468124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.600 kcal (2) G-P(sol) polarization free energy of solvation -80.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds