Wall clock time and date at job start Wed Apr 1 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31891 * 118.94935 * 2 1 4 4 C 1.32141 * 120.96598 * 179.68225 * 3 2 1 5 5 C 1.39961 * 118.91913 * 0.56288 * 4 3 2 6 6 C 1.47830 * 120.93597 * 179.71895 * 5 4 3 7 7 O 1.21558 * 120.00410 * 175.59310 * 6 5 4 8 8 N 1.34780 * 120.00093 * 355.59399 * 6 5 4 9 9 C 1.46504 * 119.99808 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.45105 * 34.96467 * 9 8 6 11 11 C 1.53038 * 109.45882 * 274.99373 * 9 8 6 12 12 C 1.53195 * 109.30984 * 178.61764 * 11 9 8 13 13 N 1.46922 * 108.77388 * 54.63931 * 12 11 9 14 14 C 1.36936 * 120.63123 * 126.36801 * 13 12 11 15 15 H 1.07993 * 120.00179 * 211.14046 * 14 13 12 16 16 C 1.38813 * 119.99919 * 31.14724 * 14 13 12 17 17 N 1.31618 * 119.99996 * 201.38589 * 16 14 13 18 18 Si 1.86804 * 120.00300 * 21.37928 * 16 14 13 19 19 H 1.48497 * 109.47070 * 273.14469 * 18 16 14 20 20 H 1.48497 * 109.46881 * 33.14018 * 18 16 14 21 21 H 1.48493 * 109.47060 * 153.14116 * 18 16 14 22 22 C 1.46930 * 118.73959 * 306.63722 * 13 12 11 23 23 H 1.08998 * 109.58508 * 293.57022 * 22 13 12 24 24 C 1.53005 * 109.58478 * 173.14649 * 22 13 12 25 25 C 1.52767 * 109.00452 * 53.31339 * 22 13 12 26 26 C 1.39922 * 118.12655 * 359.44973 * 5 4 3 27 27 C 1.50704 * 120.54325 * 180.29236 * 26 5 4 28 28 C 1.52999 * 117.50196 * 174.82328 * 27 26 5 29 29 C 1.53001 * 117.49829 * 106.16583 * 27 26 5 30 30 N 1.31856 * 118.95852 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47006 * 270.02092 * 1 2 3 32 32 H 1.08993 * 109.47778 * 30.02933 * 1 2 3 33 33 H 1.09008 * 109.46468 * 150.02989 * 1 2 3 34 34 H 1.07993 * 120.53516 * 180.30652 * 4 3 2 35 35 H 0.96997 * 119.99677 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.49473 * 58.66861 * 11 9 8 37 37 H 1.09001 * 109.52680 * 298.58497 * 11 9 8 38 38 H 1.08999 * 109.58453 * 294.84876 * 12 11 9 39 39 H 1.09005 * 109.70173 * 174.49418 * 12 11 9 40 40 H 0.97008 * 120.00278 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47118 * 60.00445 * 24 22 13 42 42 H 1.08999 * 109.46440 * 180.02562 * 24 22 13 43 43 H 1.08999 * 109.47048 * 299.99984 * 24 22 13 44 44 H 1.09000 * 109.56229 * 185.55238 * 25 22 13 45 45 H 1.09002 * 109.35855 * 65.50018 * 25 22 13 46 46 H 1.09005 * 115.54670 * 320.50365 * 27 26 5 47 47 H 1.08995 * 117.49936 * 0.02562 * 28 27 26 48 48 H 1.09002 * 117.49241 * 145.02128 * 28 27 26 49 49 H 1.09005 * 117.49648 * 214.98458 * 29 27 26 50 50 H 1.08997 * 117.49859 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2006 0.0063 5 6 4.1855 0.0001 0.0010 6 6 5.6638 0.0002 0.0014 7 8 6.2717 -1.0497 0.0776 8 7 6.3377 1.1644 -0.0827 9 6 7.8027 1.1644 -0.0817 10 1 8.1660 0.2817 -0.6078 11 6 8.3115 1.1433 1.3615 12 6 9.8431 1.1085 1.3582 13 7 10.3400 2.2372 0.5597 14 6 11.2474 3.1178 1.0853 15 1 11.2436 4.1503 0.7690 16 6 12.1724 2.6831 2.0248 17 7 12.7481 3.5495 2.8311 18 14 12.5998 0.8686 2.1447 19 1 11.6353 0.1916 3.0485 20 1 12.5291 0.2532 0.7951 21 1 13.9744 0.7186 2.6858 22 6 9.8403 2.4067 -0.8116 23 1 10.1834 1.5777 -1.4306 24 6 10.3565 3.7275 -1.3860 25 6 8.3129 2.4237 -0.7859 26 6 3.4662 -1.2000 0.0010 27 6 4.1858 -2.5242 0.0020 28 6 3.3355 -3.7903 0.1245 29 6 4.1902 -3.3247 1.3059 30 7 2.1454 -1.1537 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8896 -0.5142 33 1 -0.3632 -0.8903 -0.5134 34 1 3.9815 2.1495 0.0112 35 1 5.8527 2.0021 -0.1439 36 1 7.9286 0.2581 1.8693 37 1 7.9691 2.0378 1.8817 38 1 10.1863 0.1714 0.9197 39 1 10.2148 1.1917 2.3795 40 1 13.3942 3.2457 3.4879 41 1 11.4464 3.7180 -1.3962 42 1 9.9843 3.8515 -2.4029 43 1 10.0061 4.5541 -0.7679 44 1 7.9310 2.4499 -1.8065 45 1 7.9704 3.3066 -0.2460 46 1 5.0774 -2.5751 -0.6229 47 1 2.2556 -3.6655 0.2039 48 1 3.6680 -4.6742 -0.4197 49 1 5.0847 -3.9027 1.5385 50 1 3.6731 -2.8935 2.1630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947990228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:15 Heat of formation + Delta-G solvation = 61.751216 kcal Electronic energy + Delta-G solvation = -30548.688613 eV Core-core repulsion = 26577.549707 eV Total energy + Delta-G solvation = -3971.138906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72272 -39.73138 -38.03976 -37.40880 -34.86064 -33.95705 -33.34245 -32.41615 -31.70768 -30.35070 -29.01529 -26.63764 -25.75124 -24.80097 -23.94165 -22.68158 -22.48847 -21.49127 -21.22846 -20.40089 -19.51429 -18.08741 -17.83371 -16.70589 -16.46709 -15.93829 -15.83329 -15.33770 -15.24210 -14.75225 -14.61691 -14.43148 -14.15222 -13.77874 -13.69671 -13.38279 -13.30317 -12.93672 -12.85795 -12.56052 -12.23111 -12.01680 -11.93212 -11.86839 -11.71951 -11.57320 -11.38760 -11.15878 -11.08553 -10.76253 -10.60074 -10.46249 -10.40720 -10.24111 -10.11859 -9.95911 -9.66892 -9.63624 -9.61109 -9.44748 -8.90338 -8.57868 -6.94771 -5.96794 -3.34504 0.11277 0.64620 2.66704 2.98666 3.32774 3.34244 3.44099 3.49749 3.53984 3.58695 3.71878 4.02435 4.40434 4.53846 4.55055 4.71019 4.79691 4.82047 4.85887 4.92188 5.10396 5.11401 5.12976 5.24974 5.35929 5.43836 5.49588 5.51020 5.57384 5.68868 5.71586 5.91843 5.95021 5.95906 5.98982 6.04645 6.07095 6.17575 6.22051 6.32598 6.37321 6.46465 6.56564 6.59556 6.69650 6.76163 6.93058 7.02725 7.41188 7.66763 7.98061 8.09655 8.34629 8.93519 9.71817 10.10167 11.18681 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.002711 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.017008 B =10326.746456 C =11270.606586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.337 3.663 3 N -0.526 5.526 4 C 0.189 3.811 5 C -0.243 4.243 6 C 0.566 3.434 7 O -0.521 6.521 8 N -0.717 5.717 9 C 0.152 3.848 10 H 0.086 0.914 11 C -0.140 4.140 12 C 0.132 3.868 13 N -0.602 5.602 14 C -0.261 4.261 15 H 0.090 0.910 16 C 0.028 3.972 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.286 1.286 20 H -0.273 1.273 21 H -0.303 1.303 22 C 0.175 3.825 23 H 0.031 0.969 24 C -0.136 4.136 25 C -0.137 4.137 26 C 0.268 3.732 27 C -0.115 4.115 28 C -0.165 4.165 29 C -0.146 4.146 30 N -0.521 5.521 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.173 0.827 35 H 0.394 0.606 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.145 0.855 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.100 -7.819 -7.497 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 N -0.241 5.241 4 C 0.021 3.979 5 C -0.251 4.251 6 C 0.351 3.649 7 O -0.398 6.398 8 N -0.367 5.367 9 C 0.049 3.951 10 H 0.104 0.896 11 C -0.181 4.181 12 C 0.006 3.994 13 N -0.326 5.326 14 C -0.389 4.389 15 H 0.107 0.893 16 C -0.171 4.171 17 N -0.549 5.549 18 Si 0.706 3.294 19 H -0.213 1.213 20 H -0.198 1.198 21 H -0.231 1.231 22 C 0.068 3.932 23 H 0.049 0.951 24 C -0.193 4.193 25 C -0.176 4.176 26 C 0.122 3.878 27 C -0.134 4.134 28 C -0.202 4.202 29 C -0.184 4.184 30 N -0.235 5.235 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.190 0.810 35 H 0.229 0.771 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.163 0.837 47 H 0.124 0.876 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.512 -8.505 -7.333 26.057 hybrid contribution 1.053 -0.404 0.256 1.157 sum -22.459 -8.909 -7.077 25.177 Atomic orbital electron populations 1.20638 0.85264 1.04492 1.04196 1.23507 0.98440 0.83243 0.87688 1.68293 1.09629 1.30107 1.16040 1.23480 0.89669 0.97651 0.87072 1.21617 0.96454 0.95980 1.11028 1.17705 0.85584 0.84500 0.77070 1.90763 1.69213 1.30712 1.49134 1.46195 1.08386 1.07968 1.74168 1.21061 0.76728 0.99795 0.97538 0.89640 1.22397 0.98813 1.01564 0.95307 1.21314 0.90824 0.90367 0.96936 1.44489 1.48766 1.30609 1.08753 1.18867 1.07833 0.91296 1.20922 0.89270 1.25356 0.97076 0.96926 0.97766 1.69843 1.30713 1.34072 1.20227 0.87048 0.76652 0.87501 0.78167 1.21294 1.19770 1.23101 1.20296 0.89736 0.96440 0.86767 0.95116 1.21799 1.02295 0.97176 0.98043 1.22328 0.99329 0.96718 0.99254 1.20998 0.88338 0.93879 0.84618 1.21178 1.01166 0.86575 1.04486 1.23038 0.98956 0.96524 1.01670 1.22880 1.02424 1.01866 0.91213 1.68113 1.09054 1.30087 1.16290 0.89219 0.89260 0.89337 0.81027 0.77110 0.92345 0.91580 0.95816 0.90504 0.92767 0.91522 0.94095 0.92347 0.92100 0.91244 0.83711 0.87616 0.88353 0.87754 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.31 36.00 0.37 -0.19 16 2 C 0.34 3.47 7.64 -157.06 -1.20 2.27 16 3 N -0.53 -5.63 10.32 -10.39 -0.11 -5.74 16 4 C 0.19 1.90 10.80 -16.77 -0.18 1.71 16 5 C -0.24 -2.88 5.91 -104.70 -0.62 -3.50 16 6 C 0.57 7.60 7.72 -12.33 -0.10 7.51 16 7 O -0.52 -8.43 13.30 5.31 0.07 -8.36 16 8 N -0.72 -8.74 5.03 -54.71 -0.28 -9.02 16 9 C 0.15 2.30 2.42 -67.89 -0.16 2.14 16 10 H 0.09 1.43 7.57 -51.93 -0.39 1.04 16 11 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 12 C 0.13 2.84 4.24 -3.71 -0.02 2.82 16 13 N -0.60 -13.60 2.71 -165.02 -0.45 -14.04 16 14 C -0.26 -6.94 8.95 -15.06 -0.13 -7.07 16 15 H 0.09 2.49 6.46 -52.49 -0.34 2.15 16 16 C 0.03 0.79 5.18 -17.43 -0.09 0.70 16 17 N -0.91 -27.22 13.97 55.49 0.78 -26.45 16 18 Si 0.88 22.22 24.54 -169.99 -4.17 18.05 16 19 H -0.29 -7.02 6.45 56.52 0.36 -6.66 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 22 C 0.17 3.21 3.48 -67.81 -0.24 2.98 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 C -0.14 -2.35 7.95 37.16 0.30 -2.05 16 25 C -0.14 -2.01 4.81 -26.83 -0.13 -2.14 16 26 C 0.27 3.28 6.53 -81.82 -0.53 2.74 16 27 C -0.12 -1.35 4.58 -91.77 -0.42 -1.77 16 28 C -0.16 -1.56 10.04 -26.70 -0.27 -1.83 16 29 C -0.15 -1.53 10.24 -26.70 -0.27 -1.80 16 30 N -0.52 -5.96 9.35 -6.67 -0.06 -6.02 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.17 1.19 6.56 -52.49 -0.34 0.85 16 35 H 0.39 3.66 6.76 -40.82 -0.28 3.39 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.52 7.33 -51.93 -0.38 0.14 16 39 H 0.08 1.83 4.90 -51.93 -0.25 1.57 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.07 1.28 7.64 -51.93 -0.40 0.88 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.05 7.43 -51.93 -0.39 0.66 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.15 1.87 6.42 -51.93 -0.33 1.54 16 47 H 0.11 1.00 7.59 -51.93 -0.39 0.61 16 48 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -32.12 391.03 -9.91 -42.03 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.74 Total: 3.75 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -3.84 Total: -0.10 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.12 Total: -61.27 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.07 Total: -8.36 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.17 Total: 18.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.12 -9.91 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947990228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.779 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds