Wall clock time and date at job start Wed Apr 1 2020 03:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31891 * 118.94935 * 2 1 4 4 C 1.32141 * 120.96598 * 179.68225 * 3 2 1 5 5 C 1.39961 * 118.91913 * 0.56288 * 4 3 2 6 6 C 1.47830 * 120.93597 * 179.71895 * 5 4 3 7 7 O 1.21558 * 120.00410 * 175.59310 * 6 5 4 8 8 N 1.34780 * 120.00093 * 355.59399 * 6 5 4 9 9 C 1.46504 * 119.99808 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.45105 * 34.96467 * 9 8 6 11 11 C 1.53038 * 109.45882 * 274.99373 * 9 8 6 12 12 C 1.53195 * 109.30984 * 178.61764 * 11 9 8 13 13 N 1.46922 * 108.77388 * 54.63931 * 12 11 9 14 14 C 1.36936 * 120.63123 * 126.36801 * 13 12 11 15 15 H 1.07993 * 120.00179 * 211.14046 * 14 13 12 16 16 C 1.38813 * 119.99919 * 31.14724 * 14 13 12 17 17 N 1.31618 * 119.99996 * 201.38589 * 16 14 13 18 18 Si 1.86804 * 120.00300 * 21.37928 * 16 14 13 19 19 H 1.48497 * 109.47070 * 273.14469 * 18 16 14 20 20 H 1.48497 * 109.46881 * 33.14018 * 18 16 14 21 21 H 1.48493 * 109.47060 * 153.14116 * 18 16 14 22 22 C 1.46930 * 118.73959 * 306.63722 * 13 12 11 23 23 H 1.08998 * 109.58508 * 293.57022 * 22 13 12 24 24 C 1.53005 * 109.58478 * 173.14649 * 22 13 12 25 25 C 1.52767 * 109.00452 * 53.31339 * 22 13 12 26 26 C 1.39922 * 118.12655 * 359.44973 * 5 4 3 27 27 C 1.50704 * 120.54325 * 180.29236 * 26 5 4 28 28 C 1.52999 * 117.50196 * 174.82328 * 27 26 5 29 29 C 1.53001 * 117.49829 * 106.16583 * 27 26 5 30 30 N 1.31856 * 118.95852 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47006 * 270.02092 * 1 2 3 32 32 H 1.08993 * 109.47778 * 30.02933 * 1 2 3 33 33 H 1.09008 * 109.46468 * 150.02989 * 1 2 3 34 34 H 1.07993 * 120.53516 * 180.30652 * 4 3 2 35 35 H 0.96997 * 119.99677 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.49473 * 58.66861 * 11 9 8 37 37 H 1.09001 * 109.52680 * 298.58497 * 11 9 8 38 38 H 1.08999 * 109.58453 * 294.84876 * 12 11 9 39 39 H 1.09005 * 109.70173 * 174.49418 * 12 11 9 40 40 H 0.97008 * 120.00278 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47118 * 60.00445 * 24 22 13 42 42 H 1.08999 * 109.46440 * 180.02562 * 24 22 13 43 43 H 1.08999 * 109.47048 * 299.99984 * 24 22 13 44 44 H 1.09000 * 109.56229 * 185.55238 * 25 22 13 45 45 H 1.09002 * 109.35855 * 65.50018 * 25 22 13 46 46 H 1.09005 * 115.54670 * 320.50365 * 27 26 5 47 47 H 1.08995 * 117.49936 * 0.02562 * 28 27 26 48 48 H 1.09002 * 117.49241 * 145.02128 * 28 27 26 49 49 H 1.09005 * 117.49648 * 214.98458 * 29 27 26 50 50 H 1.08997 * 117.49859 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2006 0.0063 5 6 4.1855 0.0001 0.0010 6 6 5.6638 0.0002 0.0014 7 8 6.2717 -1.0497 0.0776 8 7 6.3377 1.1644 -0.0827 9 6 7.8027 1.1644 -0.0817 10 1 8.1660 0.2817 -0.6078 11 6 8.3115 1.1433 1.3615 12 6 9.8431 1.1085 1.3582 13 7 10.3400 2.2372 0.5597 14 6 11.2474 3.1178 1.0853 15 1 11.2436 4.1503 0.7690 16 6 12.1724 2.6831 2.0248 17 7 12.7481 3.5495 2.8311 18 14 12.5998 0.8686 2.1447 19 1 11.6353 0.1916 3.0485 20 1 12.5291 0.2532 0.7951 21 1 13.9744 0.7186 2.6858 22 6 9.8403 2.4067 -0.8116 23 1 10.1834 1.5777 -1.4306 24 6 10.3565 3.7275 -1.3860 25 6 8.3129 2.4237 -0.7859 26 6 3.4662 -1.2000 0.0010 27 6 4.1858 -2.5242 0.0020 28 6 3.3355 -3.7903 0.1245 29 6 4.1902 -3.3247 1.3059 30 7 2.1454 -1.1537 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8896 -0.5142 33 1 -0.3632 -0.8903 -0.5134 34 1 3.9815 2.1495 0.0112 35 1 5.8527 2.0021 -0.1439 36 1 7.9286 0.2581 1.8693 37 1 7.9691 2.0378 1.8817 38 1 10.1863 0.1714 0.9197 39 1 10.2148 1.1917 2.3795 40 1 13.3942 3.2457 3.4879 41 1 11.4464 3.7180 -1.3962 42 1 9.9843 3.8515 -2.4029 43 1 10.0061 4.5541 -0.7679 44 1 7.9310 2.4499 -1.8065 45 1 7.9704 3.3066 -0.2460 46 1 5.0774 -2.5751 -0.6229 47 1 2.2556 -3.6655 0.2039 48 1 3.6680 -4.6742 -0.4197 49 1 5.0847 -3.9027 1.5385 50 1 3.6731 -2.8935 2.1630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947990228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:14 Heat of formation + Delta-G solvation = 41.404527 kcal Electronic energy + Delta-G solvation = -30549.570912 eV Core-core repulsion = 26577.549707 eV Total energy + Delta-G solvation = -3972.021204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.55270 -40.86411 -39.41598 -38.27939 -36.19158 -34.85293 -34.25595 -34.06468 -33.23514 -31.84795 -29.83579 -28.07390 -26.77247 -26.25402 -24.92385 -24.25432 -23.31629 -22.67494 -22.10175 -21.59242 -21.06139 -18.98847 -18.86510 -18.30816 -17.54460 -17.30588 -16.77876 -16.63938 -16.33414 -16.10913 -15.79175 -15.63033 -15.33797 -15.06699 -14.87009 -14.75255 -14.37999 -14.34758 -13.92276 -13.53112 -13.48828 -13.34792 -13.03600 -12.83360 -12.78789 -12.72705 -12.65203 -12.48770 -12.38244 -12.24127 -12.04409 -11.88622 -11.77576 -11.62016 -11.53744 -11.30786 -11.24578 -10.79307 -10.62503 -10.50080 -10.42429 -10.04485 -8.86276 -8.14135 -5.45859 -0.71747 -0.16023 1.29782 1.40178 1.47930 1.70670 1.94721 2.43656 2.50075 2.68872 2.86036 2.91599 3.05609 3.24793 3.31457 3.53785 3.69697 3.80331 3.93481 3.96472 4.01634 4.04810 4.16532 4.21031 4.25082 4.46550 4.50978 4.57836 4.64525 4.68738 4.71446 4.72545 4.82132 4.85058 4.86597 4.94760 4.97822 5.01827 5.06631 5.07853 5.11274 5.21753 5.25498 5.30477 5.44549 5.49212 5.58879 5.76357 5.94675 6.22760 6.43841 6.87591 6.96238 7.10425 7.66981 8.08852 9.05287 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.002711 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.017008 B =10326.746456 C =11270.606586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.536 5.536 4 C 0.198 3.802 5 C -0.258 4.258 6 C 0.569 3.431 7 O -0.553 6.553 8 N -0.703 5.703 9 C 0.163 3.837 10 H 0.073 0.927 11 C -0.129 4.129 12 C 0.128 3.872 13 N -0.614 5.614 14 C -0.234 4.234 15 H 0.070 0.930 16 C -0.029 4.029 17 N -0.953 5.953 18 Si 0.927 3.073 19 H -0.278 1.278 20 H -0.271 1.271 21 H -0.312 1.312 22 C 0.163 3.837 23 H 0.034 0.966 24 C -0.129 4.129 25 C -0.122 4.122 26 C 0.257 3.743 27 C -0.131 4.131 28 C -0.146 4.146 29 C -0.148 4.148 30 N -0.531 5.531 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.203 0.797 35 H 0.412 0.588 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.050 0.950 40 H 0.259 0.741 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.129 0.871 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.105 0.895 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.167 -8.095 -9.111 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 N -0.250 5.250 4 C 0.030 3.970 5 C -0.266 4.266 6 C 0.355 3.645 7 O -0.432 6.432 8 N -0.354 5.354 9 C 0.059 3.941 10 H 0.091 0.909 11 C -0.169 4.169 12 C 0.002 3.998 13 N -0.339 5.339 14 C -0.364 4.364 15 H 0.088 0.912 16 C -0.224 4.224 17 N -0.600 5.600 18 Si 0.757 3.243 19 H -0.205 1.205 20 H -0.196 1.196 21 H -0.241 1.241 22 C 0.058 3.942 23 H 0.052 0.948 24 C -0.187 4.187 25 C -0.162 4.162 26 C 0.111 3.889 27 C -0.150 4.150 28 C -0.182 4.182 29 C -0.187 4.187 30 N -0.246 5.246 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.220 0.780 35 H 0.250 0.750 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.093 0.907 46 H 0.147 0.853 47 H 0.126 0.874 48 H 0.132 0.868 49 H 0.124 0.876 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -26.645 -8.788 -8.986 29.461 hybrid contribution 1.893 -0.295 0.684 2.035 sum -24.752 -9.083 -8.302 27.642 Atomic orbital electron populations 1.20793 0.82712 1.05580 1.05307 1.24278 1.00034 0.82899 0.86188 1.68422 1.09796 1.30193 1.16613 1.23948 0.89612 0.98136 0.85286 1.21477 0.95346 0.96763 1.13022 1.17910 0.86226 0.84123 0.76206 1.90758 1.69976 1.31904 1.50517 1.45874 1.07066 1.08663 1.73839 1.20728 0.78350 0.99651 0.95407 0.90881 1.22215 0.95793 1.01470 0.97442 1.21254 0.93486 0.89773 0.95242 1.44661 1.48319 1.30102 1.10857 1.18876 1.07188 0.91216 1.19070 0.91204 1.25862 0.98114 0.99765 0.98610 1.69947 1.32525 1.35601 1.21907 0.86200 0.75881 0.84059 0.78115 1.20459 1.19581 1.24102 1.20613 0.92315 0.97026 0.84288 0.94830 1.21732 1.00575 0.96131 1.00217 1.22153 0.96115 0.96437 1.01466 1.21155 0.88926 0.94201 0.84619 1.21117 1.01380 0.87538 1.04995 1.23081 0.98733 0.95930 1.00506 1.22892 1.02837 1.01853 0.91072 1.68186 1.08620 1.30704 1.17041 0.87880 0.88038 0.88364 0.78036 0.75040 0.92442 0.91598 0.96107 0.93216 0.93191 0.94221 0.89982 0.93404 0.88474 0.90675 0.85327 0.87415 0.86821 0.87617 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 10.31 71.23 0.73 -0.13 16 2 C 0.33 6.07 7.64 138.70 1.06 7.13 16 3 N -0.54 -10.05 10.32 -186.80 -1.93 -11.97 16 4 C 0.20 3.42 10.80 85.06 0.92 4.34 16 5 C -0.26 -5.66 5.91 -19.91 -0.12 -5.78 16 6 C 0.57 14.31 7.72 86.78 0.67 14.98 16 7 O -0.55 -17.49 13.30 -3.90 -0.05 -17.54 16 8 N -0.70 -15.15 5.03 -445.28 -2.24 -17.39 16 9 C 0.16 4.54 2.42 45.02 0.11 4.64 16 10 H 0.07 2.29 7.57 -2.39 -0.02 2.27 16 11 C -0.13 -4.39 5.65 30.67 0.17 -4.22 16 12 C 0.13 5.47 4.24 86.36 0.37 5.84 16 13 N -0.61 -27.41 2.71 -676.01 -1.83 -29.24 16 14 C -0.23 -12.58 8.95 84.03 0.75 -11.83 16 15 H 0.07 3.99 6.46 -2.91 -0.02 3.98 16 16 C -0.03 -1.65 5.18 84.86 0.44 -1.21 16 17 N -0.95 -59.15 13.97 21.65 0.30 -58.85 16 18 Si 0.93 47.05 24.54 68.60 1.68 48.73 16 19 H -0.28 -13.55 6.45 99.48 0.64 -12.91 16 20 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 22 C 0.16 5.67 3.48 44.83 0.16 5.82 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 C -0.13 -4.22 7.95 71.98 0.57 -3.65 16 25 C -0.12 -3.17 4.81 30.53 0.15 -3.02 16 26 C 0.26 5.99 6.53 42.92 0.28 6.27 16 27 C -0.13 -2.99 4.58 -11.54 -0.05 -3.05 16 28 C -0.15 -2.57 10.04 30.62 0.31 -2.26 16 29 C -0.15 -3.03 10.24 30.62 0.31 -2.71 16 30 N -0.53 -11.26 9.35 -175.03 -1.64 -12.89 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.20 2.01 6.56 -2.91 -0.02 1.99 16 35 H 0.41 6.04 6.76 -92.71 -0.63 5.41 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.02 0.91 7.33 -2.39 -0.02 0.89 16 39 H 0.05 2.38 4.90 -2.38 -0.01 2.37 16 40 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 41 H 0.04 1.49 7.64 -2.39 -0.02 1.47 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.65 7.43 -2.39 -0.02 1.63 16 44 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.13 3.35 6.42 -2.38 -0.02 3.33 16 47 H 0.11 1.87 7.59 -2.39 -0.02 1.85 16 48 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 50 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -71.70 391.03 1.40 -70.30 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.27 Total: 17.70 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 6.83 Total: 11.15 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -7.33 Total: -130.34 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.05 Total: -17.54 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.68 Total: 48.73 kcal Total: -71.70 1.40 -70.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947990228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.706 kcal (2) G-P(sol) polarization free energy of solvation -71.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds