Wall clock time and date at job start Wed Apr 1 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31919 * 119.03397 * 2 1 4 4 C 1.32178 * 121.03021 * 180.02562 * 3 2 1 5 5 C 1.38809 * 119.14783 * 0.02562 * 4 3 2 6 6 C 1.39493 * 118.26205 * 359.97438 * 5 4 3 7 7 C 1.48450 * 120.55165 * 180.02562 * 6 5 4 8 8 O 1.21484 * 119.99579 * 9.19996 * 7 6 5 9 9 N 1.34778 * 120.00268 * 189.20768 * 7 6 5 10 10 C 1.46925 * 120.63181 * 7.30832 * 9 7 6 11 11 C 1.53190 * 108.77500 * 126.41503 * 10 9 7 12 12 C 1.53034 * 109.31452 * 54.63453 * 11 10 9 13 13 C 1.53040 * 109.54079 * 298.63481 * 12 11 10 14 14 H 1.09000 * 109.52213 * 301.40016 * 13 12 11 15 15 C 1.53005 * 109.50018 * 181.31244 * 13 12 11 16 16 H 1.09000 * 109.86886 * 181.30454 * 15 13 12 17 17 C 1.54319 * 110.01305 * 302.40456 * 15 13 12 18 18 C 1.55155 * 102.94107 * 141.68028 * 17 15 13 19 19 C 1.55127 * 101.48607 * 324.32980 * 18 17 15 20 20 N 1.47018 * 109.87647 * 60.28908 * 15 13 12 21 21 C 1.36938 * 125.65085 * 61.45879 * 20 15 13 22 22 H 1.08001 * 120.00090 * 15.40990 * 21 20 15 23 23 C 1.38808 * 120.00149 * 195.42176 * 21 20 15 24 24 N 1.31626 * 119.99988 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00205 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47305 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47156 * 299.99613 * 25 23 21 28 28 H 1.48494 * 109.47353 * 59.99625 * 25 23 21 29 29 C 1.46925 * 120.62938 * 187.33223 * 9 7 6 30 30 N 1.31548 * 119.04393 * 180.28112 * 2 1 3 31 31 H 1.08994 * 109.47322 * 90.00055 * 1 2 3 32 32 H 1.09004 * 109.46613 * 209.99947 * 1 2 3 33 33 H 1.08996 * 109.47283 * 329.99321 * 1 2 3 34 34 H 1.08001 * 120.42601 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.86901 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.58390 * 246.20677 * 10 9 7 37 37 H 1.08999 * 109.58398 * 6.62873 * 10 9 7 38 38 H 1.08999 * 109.49843 * 174.59052 * 11 10 9 39 39 H 1.09006 * 109.49910 * 294.65170 * 11 10 9 40 40 H 1.08993 * 109.46356 * 178.61420 * 12 11 10 41 41 H 1.09005 * 109.45771 * 58.65457 * 12 11 10 42 42 H 1.08998 * 110.72337 * 260.04894 * 17 15 13 43 43 H 1.09008 * 110.72026 * 23.31627 * 17 15 13 44 44 H 1.08996 * 111.00576 * 82.57489 * 18 17 15 45 45 H 1.09010 * 110.99987 * 206.38777 * 18 17 15 46 46 H 1.08999 * 110.50217 * 278.45572 * 19 18 17 47 47 H 1.09004 * 110.33891 * 156.05590 * 19 18 17 48 48 H 0.96999 * 119.99891 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.58917 * 113.79593 * 29 9 7 50 50 H 1.08999 * 109.70298 * 353.44053 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1534 0.0000 4 6 3.4683 1.1994 -0.0005 5 6 4.1862 0.0114 -0.0016 6 6 3.4762 -1.1893 -0.0015 7 6 4.1926 -2.4895 -0.0021 8 8 5.3954 -2.5203 0.1656 9 7 3.5087 -3.6358 -0.1888 10 6 2.0851 -3.6076 -0.5511 11 6 1.8816 -4.4465 -1.8166 12 6 2.4444 -5.8512 -1.5886 13 6 3.9456 -5.7614 -1.3049 14 1 4.4468 -5.2801 -2.1446 15 6 4.5135 -7.1686 -1.1094 16 1 5.5784 -7.1103 -0.8840 17 6 3.7719 -7.8824 0.0404 18 6 3.6565 -9.3418 -0.4737 19 6 3.4445 -9.1178 -1.9941 20 7 4.3028 -7.9661 -2.3263 21 6 4.8144 -7.6831 -3.5646 22 1 5.6191 -6.9700 -3.6664 23 6 4.2985 -8.3124 -4.6891 24 7 3.3179 -9.1817 -4.5652 25 14 4.9958 -7.9258 -6.3784 26 1 4.2784 -8.7241 -7.4047 27 1 4.8231 -6.4792 -6.6660 28 1 6.4407 -8.2671 -6.4075 29 6 4.1724 -4.9373 -0.0335 30 7 2.1457 -1.1500 -0.0056 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 3.9824 2.1492 -0.0001 35 1 5.2662 0.0166 -0.0016 36 1 1.4925 -4.0247 0.2632 37 1 1.7766 -2.5795 -0.7407 38 1 0.8172 -4.5131 -2.0417 39 1 2.4013 -3.9770 -2.6518 40 1 2.2788 -6.4577 -2.4789 41 1 1.9409 -6.3104 -0.7378 42 1 4.3562 -7.8424 0.9597 43 1 2.7839 -7.4472 0.1909 44 1 4.5742 -9.8975 -0.2814 45 1 2.7971 -9.8452 -0.0306 46 1 2.4004 -8.8857 -2.2038 47 1 3.7582 -9.9988 -2.5542 48 1 2.9576 -9.6217 -5.3510 49 1 3.7502 -5.4630 0.8229 50 1 5.2413 -4.7887 0.1197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963428572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:14 Heat of formation + Delta-G solvation = 55.188539 kcal Electronic energy + Delta-G solvation = -31313.448991 eV Core-core repulsion = 27342.025506 eV Total energy + Delta-G solvation = -3971.423485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68499 -39.89612 -38.31155 -36.45154 -34.42335 -33.56516 -32.74396 -32.16912 -31.11703 -29.30950 -28.85412 -26.96079 -26.27380 -24.51294 -24.45581 -23.41750 -22.36901 -21.35176 -20.33797 -19.63269 -18.37470 -18.18944 -17.27035 -16.62854 -16.23220 -15.82073 -15.71500 -15.18493 -14.96736 -14.79663 -14.53553 -14.19665 -13.91436 -13.83610 -13.70771 -13.22045 -12.98764 -12.88380 -12.76305 -12.66310 -12.14257 -12.03843 -11.84546 -11.51780 -11.28198 -11.19888 -11.05648 -10.85784 -10.80863 -10.57264 -10.46107 -10.31845 -10.19012 -10.10441 -9.88757 -9.85633 -9.72112 -9.63375 -9.40478 -8.99423 -8.54325 -8.43581 -6.72807 -5.72283 -3.06666 0.20892 0.53020 2.59619 2.82005 3.40722 3.42220 3.45680 3.46546 3.51406 3.66825 4.16205 4.49028 4.51083 4.63693 4.99340 5.05969 5.19209 5.20471 5.25355 5.30981 5.37829 5.39835 5.50485 5.54217 5.57415 5.72908 5.76485 5.79952 5.86221 5.89264 5.95343 5.98433 6.16184 6.24019 6.31476 6.35440 6.40014 6.46747 6.54120 6.58861 6.67187 6.73747 6.82390 7.03785 7.08599 7.19750 7.40756 7.57622 7.59884 7.66750 7.83497 8.02770 8.32270 9.23891 9.84865 10.54569 11.39840 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003022 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.658782 B = 9262.416731 C = 9767.360242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.311 3.689 3 N -0.509 5.509 4 C 0.156 3.844 5 C -0.179 4.179 6 C 0.144 3.856 7 C 0.562 3.438 8 O -0.531 6.531 9 N -0.577 5.577 10 C 0.072 3.928 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.103 4.103 14 H 0.071 0.929 15 C 0.168 3.832 16 H 0.033 0.967 17 C -0.131 4.131 18 C -0.150 4.150 19 C 0.175 3.825 20 N -0.590 5.590 21 C -0.224 4.224 22 H 0.071 0.929 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.285 1.285 29 C 0.112 3.888 30 N -0.484 5.484 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.067 0.933 48 H 0.252 0.748 49 H 0.069 0.931 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 16.674 11.883 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.224 5.224 4 C -0.012 4.012 5 C -0.202 4.202 6 C -0.003 4.003 7 C 0.347 3.653 8 O -0.408 6.408 9 N -0.307 5.307 10 C -0.050 4.050 11 C -0.173 4.173 12 C -0.144 4.144 13 C -0.125 4.125 14 H 0.089 0.911 15 C 0.059 3.941 16 H 0.050 0.950 17 C -0.169 4.169 18 C -0.188 4.188 19 C 0.050 3.950 20 N -0.313 5.313 21 C -0.353 4.353 22 H 0.089 0.911 23 C -0.199 4.199 24 N -0.564 5.564 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.212 1.212 28 H -0.212 1.212 29 C -0.010 4.010 30 N -0.202 5.202 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.194 0.806 35 H 0.179 0.821 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.202 16.502 11.733 21.176 hybrid contribution 1.270 0.171 -1.071 1.670 sum -4.932 16.673 10.661 20.395 Atomic orbital electron populations 1.20638 0.85103 1.04544 1.04319 1.23506 0.98547 0.83300 0.90233 1.68222 1.10446 1.30377 1.13315 1.23378 0.89418 0.98667 0.89706 1.22965 1.03984 0.92875 1.00349 1.21806 0.89757 0.95075 0.93653 1.17815 0.86217 0.82824 0.78458 1.90788 1.13056 1.86206 1.50727 1.48054 1.11980 1.05394 1.65246 1.23015 0.79535 1.05551 0.96872 1.21969 1.00917 0.97168 0.97239 1.21510 0.94638 0.95314 1.02899 1.21953 0.97153 0.97426 0.95922 0.91058 1.20882 0.96044 0.89072 0.88062 0.94959 1.22703 1.00217 0.96869 0.97063 1.23041 1.00078 0.95380 1.00324 1.21433 0.93831 0.91547 0.88141 1.44458 1.58469 1.24167 1.04244 1.18890 1.12305 1.21948 0.82113 0.91076 1.24853 0.97714 0.99844 0.97533 1.69925 1.27964 1.30325 1.28184 0.86302 0.78227 0.77666 0.84198 1.21659 1.21243 1.21194 1.21939 0.98634 0.81500 0.98954 1.68341 1.08655 1.29042 1.14192 0.89220 0.89222 0.89375 0.80558 0.82119 0.91848 0.84432 0.91345 0.92260 0.89557 0.92717 0.92650 0.91392 0.92516 0.92641 0.95673 0.91498 0.93753 0.91281 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.31 3.11 7.64 -157.30 -1.20 1.91 16 3 N -0.51 -5.04 10.32 -10.73 -0.11 -5.15 16 4 C 0.16 1.31 11.31 -17.19 -0.19 1.11 16 5 C -0.18 -1.83 9.72 -38.90 -0.38 -2.21 16 6 C 0.14 1.83 6.62 -82.64 -0.55 1.28 16 7 C 0.56 8.64 7.67 -12.05 -0.09 8.55 16 8 O -0.53 -9.44 15.89 5.38 0.09 -9.35 16 9 N -0.58 -8.67 2.97 -173.65 -0.52 -9.18 16 10 C 0.07 0.96 5.93 -3.71 -0.02 0.94 16 11 C -0.13 -2.00 6.08 -26.62 -0.16 -2.17 16 12 C -0.11 -1.87 4.73 -26.69 -0.13 -1.99 16 13 C -0.10 -1.89 2.11 -90.49 -0.19 -2.08 16 14 H 0.07 1.52 7.98 -51.93 -0.41 1.10 16 15 C 0.17 3.35 2.92 -66.95 -0.20 3.15 16 16 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 17 C -0.13 -2.22 5.15 -24.90 -0.13 -2.35 16 18 C -0.15 -2.77 7.10 -24.47 -0.17 -2.94 16 19 C 0.18 4.11 5.41 -2.41 -0.01 4.10 16 20 N -0.59 -14.34 2.38 -162.44 -0.39 -14.72 16 21 C -0.22 -6.07 9.79 -15.06 -0.15 -6.22 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 24 N -0.92 -26.27 10.60 55.49 0.59 -25.68 16 25 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.11 1.77 5.60 -3.71 -0.02 1.75 16 30 N -0.48 -5.60 6.19 -7.32 -0.05 -5.64 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.16 1.47 7.76 -52.49 -0.41 1.07 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.14 1.72 3.99 -82.67 -0.33 1.39 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.89 7.59 -51.93 -0.39 1.50 16 41 H 0.05 0.90 6.03 -51.93 -0.31 0.59 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.09 5.53 -51.92 -0.29 0.81 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 46 H 0.03 0.64 8.05 -51.93 -0.42 0.22 16 47 H 0.07 1.77 6.97 -51.93 -0.36 1.41 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.07 1.00 7.08 -51.93 -0.37 0.63 16 50 H 0.09 1.47 7.01 -51.93 -0.36 1.11 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -31.56 386.39 -10.76 -42.32 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.85 Total: 2.09 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.32 Total: 2.47 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.47 Total: -60.39 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.56 -10.76 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963428572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.505 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds