Wall clock time and date at job start Wed Apr 1 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31919 * 119.03397 * 2 1 4 4 C 1.32178 * 121.03021 * 180.02562 * 3 2 1 5 5 C 1.38809 * 119.14783 * 0.02562 * 4 3 2 6 6 C 1.39493 * 118.26205 * 359.97438 * 5 4 3 7 7 C 1.48450 * 120.55165 * 180.02562 * 6 5 4 8 8 O 1.21484 * 119.99579 * 9.19996 * 7 6 5 9 9 N 1.34778 * 120.00268 * 189.20768 * 7 6 5 10 10 C 1.46925 * 120.63181 * 7.30832 * 9 7 6 11 11 C 1.53190 * 108.77500 * 126.41503 * 10 9 7 12 12 C 1.53034 * 109.31452 * 54.63453 * 11 10 9 13 13 C 1.53040 * 109.54079 * 298.63481 * 12 11 10 14 14 H 1.09000 * 109.52213 * 301.40016 * 13 12 11 15 15 C 1.53005 * 109.50018 * 181.31244 * 13 12 11 16 16 H 1.09000 * 109.86886 * 181.30454 * 15 13 12 17 17 C 1.54319 * 110.01305 * 302.40456 * 15 13 12 18 18 C 1.55155 * 102.94107 * 141.68028 * 17 15 13 19 19 C 1.55127 * 101.48607 * 324.32980 * 18 17 15 20 20 N 1.47018 * 109.87647 * 60.28908 * 15 13 12 21 21 C 1.36938 * 125.65085 * 61.45879 * 20 15 13 22 22 H 1.08001 * 120.00090 * 15.40990 * 21 20 15 23 23 C 1.38808 * 120.00149 * 195.42176 * 21 20 15 24 24 N 1.31626 * 119.99988 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00205 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47305 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47156 * 299.99613 * 25 23 21 28 28 H 1.48494 * 109.47353 * 59.99625 * 25 23 21 29 29 C 1.46925 * 120.62938 * 187.33223 * 9 7 6 30 30 N 1.31548 * 119.04393 * 180.28112 * 2 1 3 31 31 H 1.08994 * 109.47322 * 90.00055 * 1 2 3 32 32 H 1.09004 * 109.46613 * 209.99947 * 1 2 3 33 33 H 1.08996 * 109.47283 * 329.99321 * 1 2 3 34 34 H 1.08001 * 120.42601 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.86901 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.58390 * 246.20677 * 10 9 7 37 37 H 1.08999 * 109.58398 * 6.62873 * 10 9 7 38 38 H 1.08999 * 109.49843 * 174.59052 * 11 10 9 39 39 H 1.09006 * 109.49910 * 294.65170 * 11 10 9 40 40 H 1.08993 * 109.46356 * 178.61420 * 12 11 10 41 41 H 1.09005 * 109.45771 * 58.65457 * 12 11 10 42 42 H 1.08998 * 110.72337 * 260.04894 * 17 15 13 43 43 H 1.09008 * 110.72026 * 23.31627 * 17 15 13 44 44 H 1.08996 * 111.00576 * 82.57489 * 18 17 15 45 45 H 1.09010 * 110.99987 * 206.38777 * 18 17 15 46 46 H 1.08999 * 110.50217 * 278.45572 * 19 18 17 47 47 H 1.09004 * 110.33891 * 156.05590 * 19 18 17 48 48 H 0.96999 * 119.99891 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.58917 * 113.79593 * 29 9 7 50 50 H 1.08999 * 109.70298 * 353.44053 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1534 0.0000 4 6 3.4683 1.1994 -0.0005 5 6 4.1862 0.0114 -0.0016 6 6 3.4762 -1.1893 -0.0015 7 6 4.1926 -2.4895 -0.0021 8 8 5.3954 -2.5203 0.1656 9 7 3.5087 -3.6358 -0.1888 10 6 2.0851 -3.6076 -0.5511 11 6 1.8816 -4.4465 -1.8166 12 6 2.4444 -5.8512 -1.5886 13 6 3.9456 -5.7614 -1.3049 14 1 4.4468 -5.2801 -2.1446 15 6 4.5135 -7.1686 -1.1094 16 1 5.5784 -7.1103 -0.8840 17 6 3.7719 -7.8824 0.0404 18 6 3.6565 -9.3418 -0.4737 19 6 3.4445 -9.1178 -1.9941 20 7 4.3028 -7.9661 -2.3263 21 6 4.8144 -7.6831 -3.5646 22 1 5.6191 -6.9700 -3.6664 23 6 4.2985 -8.3124 -4.6891 24 7 3.3179 -9.1817 -4.5652 25 14 4.9958 -7.9258 -6.3784 26 1 4.2784 -8.7241 -7.4047 27 1 4.8231 -6.4792 -6.6660 28 1 6.4407 -8.2671 -6.4075 29 6 4.1724 -4.9373 -0.0335 30 7 2.1457 -1.1500 -0.0056 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 3.9824 2.1492 -0.0001 35 1 5.2662 0.0166 -0.0016 36 1 1.4925 -4.0247 0.2632 37 1 1.7766 -2.5795 -0.7407 38 1 0.8172 -4.5131 -2.0417 39 1 2.4013 -3.9770 -2.6518 40 1 2.2788 -6.4577 -2.4789 41 1 1.9409 -6.3104 -0.7378 42 1 4.3562 -7.8424 0.9597 43 1 2.7839 -7.4472 0.1909 44 1 4.5742 -9.8975 -0.2814 45 1 2.7971 -9.8452 -0.0306 46 1 2.4004 -8.8857 -2.2038 47 1 3.7582 -9.9988 -2.5542 48 1 2.9576 -9.6217 -5.3510 49 1 3.7502 -5.4630 0.8229 50 1 5.2413 -4.7887 0.1197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963428572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:13 Heat of formation + Delta-G solvation = 37.607220 kcal Electronic energy + Delta-G solvation = -31314.211374 eV Core-core repulsion = 27342.025506 eV Total energy + Delta-G solvation = -3972.185868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53395 -41.09937 -39.78273 -37.86745 -35.36612 -34.56544 -34.27709 -33.56963 -32.48948 -31.20444 -29.46965 -28.39272 -27.45807 -26.46284 -25.50465 -24.40068 -23.59659 -22.68289 -21.94830 -20.97398 -19.85420 -19.16552 -18.58459 -18.15981 -17.25279 -16.97238 -16.83204 -16.60928 -16.28040 -15.89853 -15.84122 -15.71237 -15.48923 -15.07424 -14.69600 -14.51196 -14.20773 -14.04704 -13.84171 -13.62026 -13.46943 -13.26090 -13.20579 -13.14979 -12.88675 -12.75401 -12.46448 -12.28394 -12.06548 -12.01215 -11.94157 -11.78793 -11.68628 -11.56819 -11.48750 -11.42465 -11.24394 -10.93970 -10.63538 -10.61074 -9.94046 -9.69294 -8.73926 -7.85330 -5.19644 -0.66510 -0.17819 1.41521 1.42748 1.49252 1.54169 1.73157 2.48152 2.59950 2.68107 2.99634 3.30329 3.32868 3.64425 3.67491 3.81194 3.94014 3.99081 4.10732 4.15888 4.27236 4.28636 4.34180 4.36721 4.43263 4.46000 4.57011 4.64277 4.76633 4.77388 4.80604 4.82770 4.87001 4.93243 4.97544 5.08971 5.13023 5.17516 5.23121 5.29957 5.36919 5.45911 5.48837 5.56239 5.64281 5.65956 5.70895 5.71708 5.83721 6.24777 6.28075 6.77230 6.92473 7.14387 7.82811 8.50224 9.25291 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003022 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.658782 B = 9262.416731 C = 9767.360242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.304 3.696 3 N -0.516 5.516 4 C 0.169 3.831 5 C -0.181 4.181 6 C 0.121 3.879 7 C 0.558 3.442 8 O -0.564 6.564 9 N -0.582 5.582 10 C 0.080 3.920 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.091 4.091 14 H 0.029 0.971 15 C 0.158 3.842 16 H 0.023 0.977 17 C -0.117 4.117 18 C -0.136 4.136 19 C 0.181 3.819 20 N -0.606 5.606 21 C -0.230 4.230 22 H 0.063 0.937 23 C -0.054 4.054 24 N -0.941 5.941 25 Si 0.963 3.037 26 H -0.291 1.291 27 H -0.284 1.284 28 H -0.281 1.281 29 C 0.122 3.878 30 N -0.495 5.495 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.218 0.782 35 H 0.167 0.833 36 H 0.084 0.916 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.084 0.916 46 H 0.001 0.999 47 H 0.027 0.973 48 H 0.246 0.754 49 H 0.095 0.905 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 18.864 14.030 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 N -0.231 5.231 4 C 0.001 3.999 5 C -0.204 4.204 6 C -0.025 4.025 7 C 0.344 3.656 8 O -0.443 6.443 9 N -0.311 5.311 10 C -0.041 4.041 11 C -0.167 4.167 12 C -0.133 4.133 13 C -0.113 4.113 14 H 0.047 0.953 15 C 0.051 3.949 16 H 0.041 0.959 17 C -0.154 4.154 18 C -0.175 4.175 19 C 0.056 3.944 20 N -0.330 5.330 21 C -0.360 4.360 22 H 0.081 0.919 23 C -0.248 4.248 24 N -0.590 5.590 25 Si 0.792 3.208 26 H -0.217 1.217 27 H -0.210 1.210 28 H -0.207 1.207 29 C -0.001 4.001 30 N -0.213 5.213 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.234 0.766 35 H 0.184 0.816 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.108 0.892 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.019 0.981 47 H 0.045 0.955 48 H 0.056 0.944 49 H 0.113 0.887 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.382 18.704 13.903 24.447 hybrid contribution 1.664 -0.426 -1.737 2.443 sum -5.718 18.278 12.166 22.689 Atomic orbital electron populations 1.20780 0.82817 1.05618 1.05254 1.24139 0.99907 0.82857 0.89285 1.68352 1.11094 1.30239 1.13427 1.24027 0.88979 0.99487 0.87394 1.23142 1.04435 0.92741 1.00032 1.21506 0.90585 0.94310 0.96057 1.18250 0.86009 0.83782 0.77516 1.90757 1.14499 1.86874 1.52178 1.48144 1.12657 1.05060 1.65250 1.23128 0.78676 1.06056 0.96288 1.21926 1.01668 0.95445 0.97631 1.21358 0.94331 0.96400 1.01245 1.21711 0.97155 0.96487 0.95909 0.95274 1.21093 0.96179 0.89954 0.87642 0.95946 1.22682 1.01079 0.94939 0.96719 1.22916 1.01481 0.96883 0.96182 1.21222 0.92090 0.89705 0.91428 1.44644 1.58199 1.25551 1.04614 1.19084 1.11993 1.21104 0.83816 0.91919 1.25510 0.98525 1.00239 1.00533 1.70112 1.29206 1.31299 1.28343 0.85397 0.77664 0.77279 0.80475 1.21689 1.21046 1.20687 1.21734 0.98398 0.81991 0.97937 1.68173 1.08037 1.30027 1.15038 0.88194 0.88343 0.88115 0.76564 0.81554 0.89764 0.83223 0.89236 0.94592 0.94535 0.90761 0.89250 0.89874 0.92156 0.89794 0.98142 0.95462 0.94448 0.88719 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.31 71.24 0.73 -0.15 16 2 C 0.30 5.32 7.64 138.79 1.06 6.38 16 3 N -0.52 -8.76 10.32 -187.86 -1.94 -10.70 16 4 C 0.17 2.34 11.31 84.78 0.96 3.30 16 5 C -0.18 -3.39 9.72 22.71 0.22 -3.17 16 6 C 0.12 2.93 6.62 41.98 0.28 3.21 16 7 C 0.56 16.96 7.67 86.97 0.67 17.63 16 8 O -0.56 -20.24 15.89 -3.67 -0.06 -20.30 16 9 N -0.58 -16.99 2.97 -821.62 -2.44 -19.43 16 10 C 0.08 1.96 5.93 86.36 0.51 2.48 16 11 C -0.13 -3.76 6.08 30.67 0.19 -3.57 16 12 C -0.10 -3.39 4.73 30.62 0.14 -3.24 16 13 C -0.09 -3.41 2.11 -10.71 -0.02 -3.43 16 14 H 0.03 1.31 7.98 -2.39 -0.02 1.29 16 15 C 0.16 6.38 2.92 45.34 0.13 6.51 16 16 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 17 C -0.12 -3.68 5.15 31.78 0.16 -3.52 16 18 C -0.14 -4.84 7.10 32.06 0.23 -4.61 16 19 C 0.18 8.74 5.41 86.93 0.47 9.21 16 20 N -0.61 -30.62 2.38 -667.83 -1.59 -32.20 16 21 C -0.23 -13.08 9.79 84.03 0.82 -12.26 16 22 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 23 C -0.05 -3.11 5.47 84.86 0.46 -2.65 16 24 N -0.94 -56.41 10.60 21.65 0.23 -56.18 16 25 Si 0.96 46.98 29.55 68.60 2.03 49.01 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 27 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 29 C 0.12 3.77 5.60 86.36 0.48 4.25 16 30 N -0.49 -10.46 6.19 -177.08 -1.10 -11.56 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.22 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.17 2.86 7.76 -2.91 -0.02 2.84 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.15 3.46 3.99 -63.07 -0.25 3.21 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.04 1.66 7.59 -2.39 -0.02 1.64 16 41 H 0.07 2.31 6.03 -2.38 -0.01 2.30 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.08 2.39 5.53 -2.38 -0.01 2.38 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 46 H 0.00 0.03 8.05 -2.39 -0.02 0.01 16 47 H 0.03 1.51 6.97 -2.38 -0.02 1.49 16 48 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.09 2.46 7.08 -2.39 -0.02 2.45 16 50 H 0.07 2.52 7.01 -2.39 -0.02 2.50 16 Total: -1.00 -73.54 386.39 3.34 -70.20 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.70 Total: 14.79 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 7.50 Total: 16.37 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -6.84 Total: -130.07 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.06 Total: -20.30 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -73.54 3.34 -70.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963428572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.808 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds