Wall clock time and date at job start Wed Apr 1 2020 03:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31912 * 119.04241 * 2 1 4 4 C 1.32175 * 121.03569 * 179.97438 * 3 2 1 5 5 C 1.38803 * 119.14362 * 0.02562 * 4 3 2 6 6 C 1.39495 * 118.26440 * 359.97438 * 5 4 3 7 7 C 1.48458 * 120.54622 * 180.02562 * 6 5 4 8 8 O 1.21472 * 120.00358 * 12.93252 * 7 6 5 9 9 N 1.34783 * 119.99623 * 192.93214 * 7 6 5 10 10 C 1.47200 * 120.81365 * 6.61859 * 9 7 6 11 11 C 1.53195 * 108.85675 * 126.33923 * 10 9 7 12 12 C 1.53038 * 109.31105 * 54.64804 * 11 10 9 13 13 C 1.53039 * 109.53983 * 298.63414 * 12 11 10 14 14 H 1.08998 * 109.50147 * 301.42254 * 13 12 11 15 15 C 1.53002 * 109.49878 * 181.31795 * 13 12 11 16 16 H 1.08999 * 109.87095 * 303.51396 * 15 13 12 17 17 C 1.54327 * 109.88006 * 182.33882 * 15 13 12 18 18 C 1.55164 * 102.93826 * 218.38976 * 17 15 13 19 19 C 1.54909 * 101.58058 * 35.50315 * 18 17 15 20 20 N 1.47025 * 109.88129 * 64.53195 * 15 13 12 21 21 C 1.36938 * 125.64437 * 298.39263 * 20 15 13 22 22 H 1.08003 * 119.99680 * 138.09202 * 21 20 15 23 23 C 1.38813 * 120.00032 * 318.08736 * 21 20 15 24 24 N 1.31624 * 119.99853 * 168.38141 * 23 21 20 25 25 Si 1.86800 * 120.00215 * 348.38281 * 23 21 20 26 26 H 1.48490 * 109.47263 * 90.10965 * 25 23 21 27 27 H 1.48496 * 109.46936 * 210.11662 * 25 23 21 28 28 H 1.48498 * 109.46840 * 330.11083 * 25 23 21 29 29 C 1.46921 * 120.62916 * 186.47302 * 9 7 6 30 30 N 1.31558 * 119.03854 * 180.27515 * 2 1 3 31 31 H 1.08991 * 109.46977 * 89.99920 * 1 2 3 32 32 H 1.08999 * 109.47237 * 210.00102 * 1 2 3 33 33 H 1.09001 * 109.46878 * 329.99968 * 1 2 3 34 34 H 1.07995 * 120.42547 * 180.02562 * 4 3 2 35 35 H 1.07994 * 120.86888 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.53806 * 6.53333 * 10 9 7 37 37 H 1.09005 * 109.68065 * 246.22473 * 10 9 7 38 38 H 1.09006 * 109.49265 * 294.69887 * 11 10 9 39 39 H 1.08998 * 109.49995 * 174.60206 * 11 10 9 40 40 H 1.08997 * 109.45687 * 178.61772 * 12 11 10 41 41 H 1.08994 * 109.45271 * 58.65390 * 12 11 10 42 42 H 1.09003 * 110.71842 * 336.75141 * 17 15 13 43 43 H 1.08999 * 110.71669 * 100.02955 * 17 15 13 44 44 H 1.08999 * 111.00263 * 277.42650 * 18 17 15 45 45 H 1.09004 * 111.03347 * 153.59022 * 18 17 15 46 46 H 1.09004 * 110.36421 * 204.15114 * 19 18 17 47 47 H 1.09006 * 110.36799 * 81.83056 * 19 18 17 48 48 H 0.96999 * 119.99630 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.58991 * 113.82060 * 29 9 7 50 50 H 1.09005 * 109.58881 * 353.54045 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4684 1.1992 0.0005 5 6 4.1861 0.0112 0.0005 6 6 3.4761 -1.1895 0.0005 7 6 4.1925 -2.4898 0.0011 8 8 5.3835 -2.5270 0.2370 9 7 3.5214 -3.6291 -0.2602 10 6 2.1138 -3.5935 -0.6894 11 6 1.9737 -4.3849 -1.9936 12 6 2.5326 -5.7952 -1.7924 13 6 4.0185 -5.7109 -1.4358 14 1 4.5553 -5.1962 -2.2327 15 6 4.5841 -7.1225 -1.2671 16 1 4.0118 -7.6633 -0.5134 17 6 6.0680 -7.0468 -0.8499 18 6 6.7104 -8.2198 -1.6368 19 6 5.9001 -8.1893 -2.9567 20 7 4.5271 -7.8405 -2.5488 21 6 3.3874 -8.1355 -3.2482 22 1 3.3675 -8.0201 -4.3218 23 6 2.2576 -8.5832 -2.5772 24 7 1.1023 -8.6485 -3.2046 25 14 2.3768 -9.0928 -0.7840 26 1 2.1186 -7.9156 0.0833 27 1 1.3698 -10.1467 -0.5011 28 1 3.7370 -9.6213 -0.5091 29 6 4.1817 -4.9346 -0.1252 30 7 2.1456 -1.1502 -0.0055 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.9826 2.1489 0.0009 35 1 5.2660 0.0162 0.0005 36 1 1.8090 -2.5601 -0.8545 37 1 1.4842 -4.0418 0.0793 38 1 2.5298 -3.8826 -2.7853 39 1 0.9213 -4.4466 -2.2704 40 1 2.4118 -6.3682 -2.7117 41 1 1.9925 -6.2878 -0.9839 42 1 6.5053 -6.0949 -1.1513 43 1 6.1748 -7.1988 0.2242 44 1 6.5690 -9.1653 -1.1132 45 1 7.7680 -8.0330 -1.8232 46 1 5.9165 -9.1689 -3.4345 47 1 6.3001 -7.4311 -3.6300 48 1 0.3128 -8.9609 -2.7356 49 1 3.7228 -5.4937 0.6902 50 1 5.2416 -4.7882 0.0832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963428573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:17 Heat of formation + Delta-G solvation = 60.288863 kcal Electronic energy + Delta-G solvation = -31814.173028 eV Core-core repulsion = 27842.970710 eV Total energy + Delta-G solvation = -3971.202318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63306 -39.84686 -38.39365 -36.55822 -34.37971 -33.52102 -32.99287 -32.21423 -31.12447 -29.95747 -28.80642 -27.23672 -26.25031 -24.58441 -24.27217 -23.29785 -22.47121 -20.82558 -20.18734 -19.76055 -19.31064 -18.16821 -17.23578 -16.76540 -16.19821 -15.92117 -15.65013 -15.51819 -15.02121 -14.86159 -14.60763 -14.10461 -13.76299 -13.59970 -13.41978 -13.22262 -13.12998 -12.94666 -12.69945 -12.66128 -12.58596 -12.16772 -12.00308 -11.72362 -11.42100 -11.18751 -11.15307 -10.92141 -10.78664 -10.66294 -10.51814 -10.39062 -10.31049 -10.23015 -10.05683 -9.81675 -9.76128 -9.56230 -9.28064 -8.97020 -8.56766 -8.17336 -6.71154 -6.04745 -3.51044 0.25389 0.57548 2.62795 2.86318 3.27818 3.42438 3.44843 3.48077 3.57685 3.71691 4.20135 4.46926 4.53301 4.67542 4.95596 5.04503 5.10372 5.17903 5.26026 5.28779 5.38236 5.43782 5.51434 5.55642 5.59523 5.60052 5.62895 5.72902 5.81184 5.89835 6.00445 6.02940 6.10846 6.22971 6.28591 6.34652 6.38690 6.42232 6.46067 6.50116 6.53301 6.70621 6.71700 6.87521 6.90139 6.95446 7.20334 7.46779 7.64726 7.66873 8.00031 8.06655 8.32011 8.84329 9.60822 10.26600 11.09489 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.003581 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.467362 B = 7817.501031 C = 8973.443531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.311 3.689 3 N -0.509 5.509 4 C 0.154 3.846 5 C -0.180 4.180 6 C 0.144 3.856 7 C 0.563 3.437 8 O -0.535 6.535 9 N -0.575 5.575 10 C 0.076 3.924 11 C -0.131 4.131 12 C -0.140 4.140 13 C -0.094 4.094 14 H 0.068 0.932 15 C 0.153 3.847 16 H 0.034 0.966 17 C -0.130 4.130 18 C -0.136 4.136 19 C 0.130 3.870 20 N -0.602 5.602 21 C -0.248 4.248 22 H 0.081 0.919 23 C 0.048 3.952 24 N -0.902 5.902 25 Si 0.885 3.115 26 H -0.278 1.278 27 H -0.305 1.305 28 H -0.271 1.271 29 C 0.108 3.892 30 N -0.484 5.484 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.024 0.976 48 H 0.265 0.735 49 H 0.064 0.936 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 16.598 7.131 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.224 5.224 4 C -0.013 4.013 5 C -0.203 4.203 6 C -0.003 4.003 7 C 0.348 3.652 8 O -0.412 6.412 9 N -0.305 5.305 10 C -0.046 4.046 11 C -0.169 4.169 12 C -0.176 4.176 13 C -0.115 4.115 14 H 0.087 0.913 15 C 0.047 3.953 16 H 0.051 0.949 17 C -0.168 4.168 18 C -0.175 4.175 19 C 0.005 3.995 20 N -0.328 5.328 21 C -0.376 4.376 22 H 0.098 0.902 23 C -0.153 4.153 24 N -0.543 5.543 25 Si 0.716 3.284 26 H -0.205 1.205 27 H -0.233 1.233 28 H -0.197 1.197 29 C -0.014 4.014 30 N -0.202 5.202 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.194 0.806 35 H 0.178 0.822 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.894 16.434 7.190 18.038 hybrid contribution 0.807 -0.344 1.114 1.418 sum 2.701 16.091 8.305 18.308 Atomic orbital electron populations 1.20640 0.85088 1.04535 1.04358 1.23494 0.98549 0.83231 0.90268 1.68214 1.10427 1.30409 1.13319 1.23358 0.89440 0.98618 0.89881 1.22943 1.03882 0.92889 1.00540 1.21782 0.89793 0.95019 0.93719 1.17800 0.86028 0.82772 0.78641 1.90766 1.13711 1.86014 1.50702 1.48105 1.13605 1.05473 1.63284 1.22963 0.79816 1.05102 0.96696 1.21957 1.01343 0.97562 0.96071 1.22236 0.93269 0.95495 1.06615 1.21857 0.98339 0.96267 0.95015 0.91337 1.21197 0.93254 0.90619 0.90242 0.94866 1.22648 0.96220 0.98774 0.99193 1.22761 0.98341 0.98223 0.98139 1.21734 0.85886 0.97907 0.94002 1.44628 1.02109 1.63089 1.22955 1.18386 0.87575 1.39317 0.92277 0.90192 1.25491 0.95906 0.96194 0.97719 1.69772 0.99121 1.48450 1.36948 0.86955 0.76993 0.77937 0.86516 1.20535 1.23317 1.19655 1.21975 0.98534 0.81783 0.99119 1.68421 1.08686 1.29310 1.13759 0.89174 0.89209 0.89392 0.80600 0.82206 0.85218 0.91787 0.92639 0.91136 0.84955 0.93090 0.91272 0.92041 0.91857 0.91932 0.93372 0.95765 0.92518 0.91737 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.32 36.01 0.37 -0.30 16 2 C 0.31 3.39 7.64 -157.29 -1.20 2.19 16 3 N -0.51 -5.36 10.32 -10.73 -0.11 -5.47 16 4 C 0.15 1.37 11.31 -17.20 -0.19 1.17 16 5 C -0.18 -1.92 9.72 -38.90 -0.38 -2.30 16 6 C 0.14 1.94 6.57 -82.64 -0.54 1.40 16 7 C 0.56 9.10 7.67 -12.05 -0.09 9.00 16 8 O -0.53 -9.64 15.92 5.39 0.09 -9.56 16 9 N -0.57 -9.53 2.98 -173.42 -0.52 -10.05 16 10 C 0.08 1.18 5.92 -3.56 -0.02 1.16 16 11 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 12 C -0.14 -2.91 3.63 -26.69 -0.10 -3.01 16 13 C -0.09 -1.84 1.96 -90.50 -0.18 -2.02 16 14 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.15 3.19 1.96 -66.95 -0.13 3.06 16 16 H 0.03 0.77 3.56 -51.93 -0.18 0.58 16 17 C -0.13 -2.27 5.45 -24.89 -0.14 -2.40 16 18 C -0.14 -2.31 7.09 -24.58 -0.17 -2.48 16 19 C 0.13 2.58 7.23 -2.53 -0.02 2.56 16 20 N -0.60 -13.96 2.60 -162.57 -0.42 -14.39 16 21 C -0.25 -6.57 8.22 -15.06 -0.12 -6.70 16 22 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 23 C 0.05 1.31 3.63 -17.43 -0.06 1.25 16 24 N -0.90 -25.77 13.97 55.49 0.78 -24.99 16 25 Si 0.88 21.93 23.15 -169.99 -3.94 17.99 16 26 H -0.28 -6.63 5.95 56.52 0.34 -6.29 16 27 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 28 H -0.27 -6.73 6.97 56.52 0.39 -6.34 16 29 C 0.11 1.90 5.33 -3.71 -0.02 1.88 16 30 N -0.48 -6.14 6.30 -7.32 -0.05 -6.18 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.16 1.50 7.79 -52.49 -0.41 1.10 16 36 H 0.13 1.84 4.11 -75.41 -0.31 1.53 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.13 3.27 4.35 -51.93 -0.23 3.04 16 41 H 0.05 1.13 5.74 -51.93 -0.30 0.84 16 42 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.09 1.56 5.98 -51.93 -0.31 1.25 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -30.86 374.21 -9.37 -40.23 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.67 Total: 4.75 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.16 Total: 2.03 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.32 Total: -61.08 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.94 Total: 17.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.86 -9.37 -40.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963428573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.514 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds