Wall clock time and date at job start Wed Apr 1 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31912 * 119.04241 * 2 1 4 4 C 1.32175 * 121.03569 * 179.97438 * 3 2 1 5 5 C 1.38803 * 119.14362 * 0.02562 * 4 3 2 6 6 C 1.39495 * 118.26440 * 359.97438 * 5 4 3 7 7 C 1.48458 * 120.54622 * 180.02562 * 6 5 4 8 8 O 1.21472 * 120.00358 * 12.93252 * 7 6 5 9 9 N 1.34783 * 119.99623 * 192.93214 * 7 6 5 10 10 C 1.47200 * 120.81365 * 6.61859 * 9 7 6 11 11 C 1.53195 * 108.85675 * 126.33923 * 10 9 7 12 12 C 1.53038 * 109.31105 * 54.64804 * 11 10 9 13 13 C 1.53039 * 109.53983 * 298.63414 * 12 11 10 14 14 H 1.08998 * 109.50147 * 301.42254 * 13 12 11 15 15 C 1.53002 * 109.49878 * 181.31795 * 13 12 11 16 16 H 1.08999 * 109.87095 * 303.51396 * 15 13 12 17 17 C 1.54327 * 109.88006 * 182.33882 * 15 13 12 18 18 C 1.55164 * 102.93826 * 218.38976 * 17 15 13 19 19 C 1.54909 * 101.58058 * 35.50315 * 18 17 15 20 20 N 1.47025 * 109.88129 * 64.53195 * 15 13 12 21 21 C 1.36938 * 125.64437 * 298.39263 * 20 15 13 22 22 H 1.08003 * 119.99680 * 138.09202 * 21 20 15 23 23 C 1.38813 * 120.00032 * 318.08736 * 21 20 15 24 24 N 1.31624 * 119.99853 * 168.38141 * 23 21 20 25 25 Si 1.86800 * 120.00215 * 348.38281 * 23 21 20 26 26 H 1.48490 * 109.47263 * 90.10965 * 25 23 21 27 27 H 1.48496 * 109.46936 * 210.11662 * 25 23 21 28 28 H 1.48498 * 109.46840 * 330.11083 * 25 23 21 29 29 C 1.46921 * 120.62916 * 186.47302 * 9 7 6 30 30 N 1.31558 * 119.03854 * 180.27515 * 2 1 3 31 31 H 1.08991 * 109.46977 * 89.99920 * 1 2 3 32 32 H 1.08999 * 109.47237 * 210.00102 * 1 2 3 33 33 H 1.09001 * 109.46878 * 329.99968 * 1 2 3 34 34 H 1.07995 * 120.42547 * 180.02562 * 4 3 2 35 35 H 1.07994 * 120.86888 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.53806 * 6.53333 * 10 9 7 37 37 H 1.09005 * 109.68065 * 246.22473 * 10 9 7 38 38 H 1.09006 * 109.49265 * 294.69887 * 11 10 9 39 39 H 1.08998 * 109.49995 * 174.60206 * 11 10 9 40 40 H 1.08997 * 109.45687 * 178.61772 * 12 11 10 41 41 H 1.08994 * 109.45271 * 58.65390 * 12 11 10 42 42 H 1.09003 * 110.71842 * 336.75141 * 17 15 13 43 43 H 1.08999 * 110.71669 * 100.02955 * 17 15 13 44 44 H 1.08999 * 111.00263 * 277.42650 * 18 17 15 45 45 H 1.09004 * 111.03347 * 153.59022 * 18 17 15 46 46 H 1.09004 * 110.36421 * 204.15114 * 19 18 17 47 47 H 1.09006 * 110.36799 * 81.83056 * 19 18 17 48 48 H 0.96999 * 119.99630 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.58991 * 113.82060 * 29 9 7 50 50 H 1.09005 * 109.58881 * 353.54045 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4684 1.1992 0.0005 5 6 4.1861 0.0112 0.0005 6 6 3.4761 -1.1895 0.0005 7 6 4.1925 -2.4898 0.0011 8 8 5.3835 -2.5270 0.2370 9 7 3.5214 -3.6291 -0.2602 10 6 2.1138 -3.5935 -0.6894 11 6 1.9737 -4.3849 -1.9936 12 6 2.5326 -5.7952 -1.7924 13 6 4.0185 -5.7109 -1.4358 14 1 4.5553 -5.1962 -2.2327 15 6 4.5841 -7.1225 -1.2671 16 1 4.0118 -7.6633 -0.5134 17 6 6.0680 -7.0468 -0.8499 18 6 6.7104 -8.2198 -1.6368 19 6 5.9001 -8.1893 -2.9567 20 7 4.5271 -7.8405 -2.5488 21 6 3.3874 -8.1355 -3.2482 22 1 3.3675 -8.0201 -4.3218 23 6 2.2576 -8.5832 -2.5772 24 7 1.1023 -8.6485 -3.2046 25 14 2.3768 -9.0928 -0.7840 26 1 2.1186 -7.9156 0.0833 27 1 1.3698 -10.1467 -0.5011 28 1 3.7370 -9.6213 -0.5091 29 6 4.1817 -4.9346 -0.1252 30 7 2.1456 -1.1502 -0.0055 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.9826 2.1489 0.0009 35 1 5.2660 0.0162 0.0005 36 1 1.8090 -2.5601 -0.8545 37 1 1.4842 -4.0418 0.0793 38 1 2.5298 -3.8826 -2.7853 39 1 0.9213 -4.4466 -2.2704 40 1 2.4118 -6.3682 -2.7117 41 1 1.9925 -6.2878 -0.9839 42 1 6.5053 -6.0949 -1.1513 43 1 6.1748 -7.1988 0.2242 44 1 6.5690 -9.1653 -1.1132 45 1 7.7680 -8.0330 -1.8232 46 1 5.9165 -9.1689 -3.4345 47 1 6.3001 -7.4311 -3.6300 48 1 0.3128 -8.9609 -2.7356 49 1 3.7228 -5.4937 0.6902 50 1 5.2416 -4.7882 0.0832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963428573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:16 Heat of formation + Delta-G solvation = 41.570973 kcal Electronic energy + Delta-G solvation = -31814.984697 eV Core-core repulsion = 27842.970710 eV Total energy + Delta-G solvation = -3972.013987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.54366 -41.13939 -39.88704 -37.98279 -35.33767 -34.85915 -34.29537 -33.69876 -32.60953 -31.74647 -29.49685 -28.67128 -27.45683 -26.39128 -25.45582 -24.37126 -23.76992 -22.21572 -21.72836 -21.40726 -20.64492 -19.21797 -18.66955 -18.19655 -17.48969 -17.27490 -16.86204 -16.66291 -16.43586 -15.88172 -15.80069 -15.41830 -15.34896 -15.09819 -14.88547 -14.75838 -14.41798 -14.21805 -14.03729 -13.67814 -13.62360 -13.49029 -13.30504 -13.23350 -12.92879 -12.88606 -12.45314 -12.36023 -12.13306 -12.06518 -11.98021 -11.86672 -11.83935 -11.73365 -11.59888 -11.41714 -11.13307 -10.94593 -10.61902 -10.44567 -9.99612 -9.71938 -8.62663 -8.17341 -5.60038 -0.66899 -0.18194 1.27820 1.37243 1.46733 1.51241 1.68428 2.40653 2.56719 2.68073 2.97711 3.10449 3.27344 3.37128 3.66493 3.74553 3.88733 3.95602 4.07286 4.08751 4.13777 4.14672 4.23393 4.34027 4.37102 4.43778 4.51942 4.55905 4.58726 4.72796 4.75980 4.78899 4.81997 4.86297 4.93853 4.97945 4.98699 5.08579 5.11816 5.13639 5.23097 5.30741 5.36314 5.42672 5.52182 5.56734 5.70523 5.81803 6.02170 6.20285 6.21384 6.73736 6.88688 6.91095 7.55677 8.26906 9.01016 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.003581 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.467362 B = 7817.501031 C = 8973.443531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.304 3.696 3 N -0.515 5.515 4 C 0.168 3.832 5 C -0.176 4.176 6 C 0.119 3.881 7 C 0.563 3.437 8 O -0.557 6.557 9 N -0.583 5.583 10 C 0.086 3.914 11 C -0.125 4.125 12 C -0.133 4.133 13 C -0.084 4.084 14 H 0.055 0.945 15 C 0.145 3.855 16 H 0.018 0.982 17 C -0.124 4.124 18 C -0.123 4.123 19 C 0.121 3.879 20 N -0.619 5.619 21 C -0.235 4.235 22 H 0.041 0.959 23 C 0.015 3.985 24 N -0.941 5.941 25 Si 0.932 3.068 26 H -0.266 1.266 27 H -0.314 1.314 28 H -0.268 1.268 29 C 0.116 3.884 30 N -0.502 5.502 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.220 0.780 35 H 0.172 0.828 36 H 0.150 0.850 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.041 0.959 47 H 0.030 0.970 48 H 0.263 0.737 49 H 0.065 0.935 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 19.188 9.060 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 N -0.230 5.230 4 C 0.001 3.999 5 C -0.199 4.199 6 C -0.027 4.027 7 C 0.349 3.651 8 O -0.436 6.436 9 N -0.312 5.312 10 C -0.035 4.035 11 C -0.163 4.163 12 C -0.170 4.170 13 C -0.105 4.105 14 H 0.073 0.927 15 C 0.039 3.961 16 H 0.035 0.965 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.004 4.004 20 N -0.345 5.345 21 C -0.364 4.364 22 H 0.058 0.942 23 C -0.183 4.183 24 N -0.585 5.585 25 Si 0.763 3.237 26 H -0.192 1.192 27 H -0.243 1.243 28 H -0.193 1.193 29 C -0.006 4.006 30 N -0.220 5.220 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.237 0.763 35 H 0.189 0.811 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.293 19.034 9.128 21.365 hybrid contribution 0.415 -1.026 0.413 1.181 sum 3.708 18.009 9.542 20.715 Atomic orbital electron populations 1.20765 0.83121 1.05405 1.05248 1.24041 0.99771 0.82845 0.89526 1.68341 1.11255 1.30043 1.13357 1.24069 0.88883 0.99597 0.87386 1.23154 1.04524 0.92468 0.99727 1.21508 0.90478 0.94428 0.96295 1.18190 0.85878 0.83452 0.77546 1.90737 1.14699 1.86561 1.51570 1.48153 1.13880 1.05399 1.63787 1.22967 0.79510 1.05789 0.95275 1.21882 1.01329 0.95733 0.97375 1.22002 0.94471 0.96864 1.03710 1.21689 0.96950 0.96026 0.95866 0.92652 1.21334 0.95850 0.90471 0.88465 0.96500 1.22657 0.93304 0.99563 1.00642 1.22715 0.99769 0.98022 0.95652 1.21893 0.84743 0.97642 0.96072 1.44765 1.02374 1.63877 1.23457 1.18106 0.89062 1.38272 0.90925 0.94170 1.25812 0.95406 0.96638 1.00485 1.69875 0.99774 1.50460 1.38379 0.86190 0.76562 0.77598 0.83384 1.19244 1.24332 1.19313 1.21774 0.99093 0.82260 0.97512 1.68212 1.08445 1.30480 1.14874 0.88150 0.88911 0.87954 0.76314 0.81094 0.83412 0.91592 0.93051 0.90631 0.89051 0.94772 0.90189 0.89768 0.91949 0.88278 0.94083 0.95206 0.92739 0.91643 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.32 71.24 0.73 -0.39 16 2 C 0.30 5.93 7.64 138.79 1.06 6.99 16 3 N -0.52 -9.26 10.32 -187.87 -1.94 -11.20 16 4 C 0.17 2.37 11.31 84.78 0.96 3.33 16 5 C -0.18 -3.29 9.72 22.71 0.22 -3.07 16 6 C 0.12 3.00 6.57 41.98 0.28 3.27 16 7 C 0.56 17.52 7.67 86.97 0.67 18.18 16 8 O -0.56 -19.35 15.92 -3.63 -0.06 -19.40 16 9 N -0.58 -18.80 2.98 -820.89 -2.45 -21.25 16 10 C 0.09 2.61 5.92 86.31 0.51 3.12 16 11 C -0.12 -4.40 6.08 30.67 0.19 -4.22 16 12 C -0.13 -5.72 3.63 30.62 0.11 -5.61 16 13 C -0.08 -3.31 1.96 -10.71 -0.02 -3.33 16 14 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 15 C 0.14 5.94 1.96 45.34 0.09 6.03 16 16 H 0.02 0.78 3.56 -2.39 -0.01 0.77 16 17 C -0.12 -3.99 5.45 31.79 0.17 -3.81 16 18 C -0.12 -3.84 7.09 31.99 0.23 -3.61 16 19 C 0.12 4.73 7.23 86.86 0.63 5.36 16 20 N -0.62 -29.06 2.60 -668.25 -1.74 -30.79 16 21 C -0.23 -12.99 8.22 84.03 0.69 -12.30 16 22 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 23 C 0.01 0.82 3.63 84.86 0.31 1.13 16 24 N -0.94 -56.20 13.97 21.65 0.30 -55.90 16 25 Si 0.93 46.12 23.15 68.60 1.59 47.71 16 26 H -0.27 -12.49 5.95 99.48 0.59 -11.90 16 27 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 28 H -0.27 -12.98 6.97 99.48 0.69 -12.29 16 29 C 0.12 3.98 5.33 86.36 0.46 4.44 16 30 N -0.50 -11.85 6.30 -177.08 -1.12 -12.97 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.22 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.17 2.76 7.79 -2.91 -0.02 2.74 16 36 H 0.15 4.04 4.11 -48.75 -0.20 3.84 16 37 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.09 4.74 4.35 -2.39 -0.01 4.73 16 41 H 0.03 1.55 5.74 -2.39 -0.01 1.53 16 42 H 0.08 2.42 7.44 -2.39 -0.02 2.40 16 43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 47 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.10 3.16 5.98 -2.38 -0.01 3.15 16 Total: -1.00 -69.80 374.21 2.51 -67.30 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.63 Total: 20.99 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 7.28 Total: 15.51 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -6.94 Total: -132.11 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.40 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.59 Total: 47.71 kcal Total: -69.80 2.51 -67.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963428573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.867 kcal (2) G-P(sol) polarization free energy of solvation -69.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds