Wall clock time and date at job start Wed Apr 1 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47386 * 2 1 4 4 C 1.38550 * 120.01480 * 124.99839 * 3 2 1 5 5 C 1.40073 * 117.81640 * 180.02562 * 4 3 2 6 6 C 1.48131 * 121.14727 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00399 * 173.92775 * 6 5 4 8 8 N 1.34779 * 119.99737 * 353.92430 * 6 5 4 9 9 C 1.46504 * 120.00114 * 179.97438 * 8 6 5 10 10 C 1.53953 * 113.58068 * 155.00170 * 9 8 6 11 11 C 1.52908 * 86.77998 * 89.87398 * 10 9 8 12 12 C 1.52910 * 121.13795 * 259.18122 * 11 10 9 13 13 C 1.53949 * 86.78236 * 209.38215 * 12 11 10 14 14 N 1.46502 * 113.57614 * 139.33963 * 13 12 11 15 15 C 1.36932 * 120.00050 * 107.28182 * 14 13 12 16 16 H 1.07997 * 120.00191 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99914 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99724 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46974 * 60.00337 * 19 17 15 21 21 H 1.48500 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47442 * 300.00750 * 19 17 15 23 23 C 1.52909 * 121.13631 * 150.62008 * 11 10 9 24 24 C 1.52905 * 88.04310 * 24.89781 * 11 10 9 25 25 C 1.39770 * 117.70729 * 0.26081 * 5 4 3 26 26 C 1.50700 * 120.17070 * 179.72395 * 25 5 4 27 27 N 1.31895 * 119.65620 * 359.47699 * 25 5 4 28 28 N 1.28274 * 122.32843 * 0.54547 * 27 25 5 29 29 H 1.08999 * 109.46988 * 59.99705 * 1 2 3 30 30 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46478 * 299.99975 * 1 2 3 32 32 H 1.09003 * 109.46478 * 240.00025 * 2 1 3 33 33 H 1.08997 * 109.47489 * 120.00438 * 2 1 3 34 34 H 1.07999 * 121.09222 * 0.02562 * 4 3 2 35 35 H 0.97002 * 119.99967 * 0.02562 * 8 6 5 36 36 H 1.09002 * 112.87082 * 23.86252 * 9 8 6 37 37 H 1.09006 * 113.65992 * 335.40295 * 10 9 8 38 38 H 1.08991 * 113.66051 * 204.34510 * 10 9 8 39 39 H 1.09000 * 113.65878 * 323.85627 * 12 11 10 40 40 H 1.09003 * 113.66429 * 94.90305 * 12 11 10 41 41 H 1.09000 * 113.57948 * 270.12314 * 13 12 11 42 42 H 0.97000 * 119.99925 * 287.26803 * 14 13 12 43 43 H 0.97000 * 119.99602 * 179.97438 * 18 17 15 44 44 H 1.08999 * 113.66256 * 265.09112 * 23 11 10 45 45 H 1.08999 * 113.66211 * 36.05656 * 23 11 10 46 46 H 1.08999 * 113.66326 * 89.57489 * 24 11 10 47 47 H 1.09006 * 113.66620 * 220.62646 * 24 11 10 48 48 H 1.09001 * 109.46976 * 83.65019 * 26 25 5 49 49 H 1.09000 * 109.46828 * 203.64612 * 26 25 5 50 50 H 1.09002 * 109.47175 * 323.64947 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.9122 1.8448 0.9828 5 6 3.3494 3.1749 0.9391 6 6 4.2895 3.7061 1.9531 7 8 4.7414 4.8278 1.8342 8 7 4.6437 2.9452 3.0077 9 6 5.5739 3.4703 4.0103 10 6 5.4251 2.8111 5.3936 11 6 6.4555 1.7854 4.9201 12 6 6.0271 0.3993 4.4369 13 6 7.3931 -0.1026 4.9391 14 7 7.3287 -1.4026 5.6114 15 6 7.8192 -2.5199 4.9899 16 1 8.2531 -2.4428 4.0040 17 6 7.7586 -3.7516 5.6272 18 7 7.2292 -3.8456 6.8286 19 14 8.4270 -5.2759 4.7792 20 1 9.8726 -5.0901 4.4944 21 1 8.2438 -6.4548 5.6634 22 1 7.6957 -5.4946 3.5054 23 6 7.3940 1.0930 5.9089 24 6 6.9758 2.8381 3.9407 25 6 2.8632 3.9852 -0.0907 26 6 3.2922 5.4267 -0.1869 27 7 2.0308 3.4805 -0.9807 28 7 1.6343 2.2614 -0.9351 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 3.2499 1.1719 1.7571 35 1 4.2832 2.0497 3.1025 36 1 5.5881 4.5597 4.0457 37 1 4.4366 2.3878 5.5723 38 1 5.7751 3.4354 6.2156 39 1 5.1807 -0.0130 4.9861 40 1 5.9062 0.3309 3.3558 41 1 8.1794 -0.0537 4.1858 42 1 6.9388 -1.4719 6.4969 43 1 7.1866 -4.7064 7.2738 44 1 8.3652 1.5787 6.0037 45 1 6.9322 0.8770 6.8724 46 1 7.7617 3.4700 4.3544 47 1 7.2263 2.4364 2.9588 48 1 4.2490 5.4871 -0.7055 49 1 2.5427 5.9926 -0.7402 50 1 3.3951 5.8428 0.8153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964532046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:07 Heat of formation + Delta-G solvation = 69.115713 kcal Electronic energy + Delta-G solvation = -29875.011645 eV Core-core repulsion = 25904.192088 eV Total energy + Delta-G solvation = -3970.819557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76859 -40.72521 -39.21840 -36.11352 -35.48861 -34.16776 -33.54377 -32.47797 -31.53321 -29.66073 -28.15056 -26.35129 -25.89606 -25.31200 -24.39876 -23.80384 -23.28369 -22.11052 -20.99849 -20.00769 -18.22593 -17.96455 -17.71239 -17.12077 -16.27518 -16.07589 -15.86827 -15.39760 -15.34420 -14.91623 -14.76113 -14.41024 -14.32031 -14.05769 -13.71792 -13.62790 -13.23578 -13.14857 -12.80863 -12.61938 -12.50881 -12.38954 -12.17496 -12.11537 -11.76203 -11.56218 -11.40769 -11.15240 -11.09805 -10.94252 -10.82928 -10.64071 -10.60652 -10.30651 -10.08922 -9.94857 -9.85518 -9.82730 -9.73372 -9.47067 -9.22403 -8.92569 -7.03278 -5.84758 -3.13675 -0.04864 0.48489 2.39632 2.62996 3.20758 3.38151 3.43292 3.43940 3.54629 3.83256 3.98615 4.20095 4.31563 4.47321 4.49664 4.58878 4.64977 4.67672 4.74674 4.78407 4.90954 5.09240 5.17666 5.23309 5.29678 5.38478 5.42604 5.50474 5.55964 5.59874 5.65919 5.66966 5.70291 5.73137 5.78468 5.82370 5.86028 5.92494 5.96496 6.05098 6.08381 6.14112 6.24078 6.28775 6.36198 6.48829 6.82470 7.02358 7.10927 7.62624 7.75765 8.33275 8.34017 9.45120 10.03076 10.37343 11.37494 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.002788 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.285972 B =10039.901522 C =12244.358048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C 0.063 3.937 4 C -0.078 4.078 5 C -0.132 4.132 6 C 0.565 3.435 7 O -0.519 6.519 8 N -0.697 5.697 9 C 0.121 3.879 10 C -0.132 4.132 11 C -0.107 4.107 12 C -0.146 4.146 13 C 0.170 3.830 14 N -0.713 5.713 15 C -0.245 4.245 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.138 4.138 24 C -0.125 4.125 25 C 0.117 3.883 26 C -0.104 4.104 27 N -0.242 5.242 28 N -0.219 5.219 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.403 0.597 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 15.708 -9.364 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.082 4.082 4 C -0.107 4.107 5 C -0.146 4.146 6 C 0.351 3.649 7 O -0.396 6.396 8 N -0.348 5.348 9 C 0.016 3.984 10 C -0.170 4.170 11 C -0.107 4.107 12 C -0.187 4.187 13 C 0.058 3.942 14 N -0.350 5.350 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.178 4.178 24 C -0.163 4.163 25 C -0.028 4.028 26 C -0.162 4.162 27 N -0.084 5.084 28 N -0.062 5.062 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.173 0.827 35 H 0.239 0.761 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.863 16.596 -10.880 22.623 hybrid contribution 0.956 -1.774 1.248 2.371 sum -9.907 14.822 -9.632 20.264 Atomic orbital electron populations 1.21712 0.93521 1.02438 1.02754 1.20517 0.97472 0.88658 1.04354 1.22899 0.94440 0.98838 0.91992 1.22633 0.94418 0.95099 0.98580 1.21092 1.00164 0.95031 0.98298 1.17845 0.80751 0.85232 0.81102 1.90748 1.54468 1.18531 1.75860 1.45608 1.46762 1.18590 1.23799 1.21956 0.89555 0.98880 0.88023 1.23166 1.00050 0.98239 0.95500 1.22385 0.97250 0.93299 0.97786 1.23642 1.02553 0.92905 0.99575 1.21490 0.93830 0.85038 0.93816 1.42411 1.71374 1.01950 1.19301 1.19251 1.32306 0.86446 0.99661 0.91217 1.24758 1.01561 0.97791 0.96675 1.69646 1.50187 1.24448 1.13758 0.86283 0.78777 0.82799 0.78411 1.21213 1.21647 1.21228 1.23279 0.98178 0.98041 0.98252 1.23127 0.96073 0.97351 0.99789 1.23137 0.91519 0.98771 0.89340 1.20960 1.01922 0.87847 1.05482 1.73095 1.09185 1.05477 1.20670 1.72764 1.16922 0.97464 1.19004 0.91434 0.91613 0.92767 0.89066 0.89380 0.82709 0.76066 0.87892 0.90986 0.88654 0.90103 0.92964 0.90861 0.78100 0.93374 0.92157 0.90193 0.88919 0.91038 0.89392 0.90599 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.78 37.16 0.36 -0.69 16 2 C -0.07 -0.53 6.35 -27.88 -0.18 -0.71 16 3 C 0.06 0.62 6.25 -82.45 -0.52 0.10 16 4 C -0.08 -0.71 9.29 -38.78 -0.36 -1.07 16 5 C -0.13 -1.40 5.92 -104.57 -0.62 -2.02 16 6 C 0.57 6.28 7.73 -12.20 -0.09 6.19 16 7 O -0.52 -6.81 13.14 5.36 0.07 -6.74 16 8 N -0.70 -6.82 5.22 -53.70 -0.28 -7.10 16 9 C 0.12 1.22 4.32 -66.95 -0.29 0.93 16 10 C -0.13 -1.32 7.59 -26.28 -0.20 -1.52 16 11 C -0.11 -1.30 1.02 -154.71 -0.16 -1.46 16 12 C -0.15 -2.15 6.97 -26.28 -0.18 -2.33 16 13 C 0.17 3.12 4.48 -66.95 -0.30 2.82 16 14 N -0.71 -16.97 5.40 -52.47 -0.28 -17.25 16 15 C -0.25 -6.56 9.97 -15.06 -0.15 -6.71 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 19 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.14 -2.07 7.59 -26.28 -0.20 -2.27 16 24 C -0.12 -1.37 7.64 -26.29 -0.20 -1.57 16 25 C 0.12 1.34 6.91 -81.99 -0.57 0.77 16 26 C -0.10 -1.01 8.97 36.01 0.32 -0.69 16 27 N -0.24 -3.08 11.42 33.81 0.39 -2.69 16 28 N -0.22 -2.66 11.04 33.58 0.37 -2.29 16 29 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.53 7.92 -51.93 -0.41 0.12 16 34 H 0.16 1.02 6.60 -52.49 -0.35 0.67 16 35 H 0.40 3.46 6.23 -40.82 -0.25 3.21 16 36 H 0.10 1.07 7.47 -51.93 -0.39 0.69 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 41 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 42 H 0.38 9.77 7.92 -40.82 -0.32 9.44 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.10 1.06 5.95 -51.93 -0.31 0.75 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -31.37 406.47 -9.24 -40.61 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.90 Total: 9.86 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.42 Total: -10.64 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.92 Total: -55.93 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.07 Total: -6.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.37 -9.24 -40.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964532046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.725 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds