Wall clock time and date at job start Wed Apr 1 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47386 * 2 1 4 4 C 1.38550 * 120.01480 * 124.99839 * 3 2 1 5 5 C 1.40073 * 117.81640 * 180.02562 * 4 3 2 6 6 C 1.48131 * 121.14727 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00399 * 173.92775 * 6 5 4 8 8 N 1.34779 * 119.99737 * 353.92430 * 6 5 4 9 9 C 1.46504 * 120.00114 * 179.97438 * 8 6 5 10 10 C 1.53953 * 113.58068 * 155.00170 * 9 8 6 11 11 C 1.52908 * 86.77998 * 89.87398 * 10 9 8 12 12 C 1.52910 * 121.13795 * 259.18122 * 11 10 9 13 13 C 1.53949 * 86.78236 * 209.38215 * 12 11 10 14 14 N 1.46502 * 113.57614 * 139.33963 * 13 12 11 15 15 C 1.36932 * 120.00050 * 107.28182 * 14 13 12 16 16 H 1.07997 * 120.00191 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99914 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99724 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46974 * 60.00337 * 19 17 15 21 21 H 1.48500 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47442 * 300.00750 * 19 17 15 23 23 C 1.52909 * 121.13631 * 150.62008 * 11 10 9 24 24 C 1.52905 * 88.04310 * 24.89781 * 11 10 9 25 25 C 1.39770 * 117.70729 * 0.26081 * 5 4 3 26 26 C 1.50700 * 120.17070 * 179.72395 * 25 5 4 27 27 N 1.31895 * 119.65620 * 359.47699 * 25 5 4 28 28 N 1.28274 * 122.32843 * 0.54547 * 27 25 5 29 29 H 1.08999 * 109.46988 * 59.99705 * 1 2 3 30 30 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46478 * 299.99975 * 1 2 3 32 32 H 1.09003 * 109.46478 * 240.00025 * 2 1 3 33 33 H 1.08997 * 109.47489 * 120.00438 * 2 1 3 34 34 H 1.07999 * 121.09222 * 0.02562 * 4 3 2 35 35 H 0.97002 * 119.99967 * 0.02562 * 8 6 5 36 36 H 1.09002 * 112.87082 * 23.86252 * 9 8 6 37 37 H 1.09006 * 113.65992 * 335.40295 * 10 9 8 38 38 H 1.08991 * 113.66051 * 204.34510 * 10 9 8 39 39 H 1.09000 * 113.65878 * 323.85627 * 12 11 10 40 40 H 1.09003 * 113.66429 * 94.90305 * 12 11 10 41 41 H 1.09000 * 113.57948 * 270.12314 * 13 12 11 42 42 H 0.97000 * 119.99925 * 287.26803 * 14 13 12 43 43 H 0.97000 * 119.99602 * 179.97438 * 18 17 15 44 44 H 1.08999 * 113.66256 * 265.09112 * 23 11 10 45 45 H 1.08999 * 113.66211 * 36.05656 * 23 11 10 46 46 H 1.08999 * 113.66326 * 89.57489 * 24 11 10 47 47 H 1.09006 * 113.66620 * 220.62646 * 24 11 10 48 48 H 1.09001 * 109.46976 * 83.65019 * 26 25 5 49 49 H 1.09000 * 109.46828 * 203.64612 * 26 25 5 50 50 H 1.09002 * 109.47175 * 323.64947 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.9122 1.8448 0.9828 5 6 3.3494 3.1749 0.9391 6 6 4.2895 3.7061 1.9531 7 8 4.7414 4.8278 1.8342 8 7 4.6437 2.9452 3.0077 9 6 5.5739 3.4703 4.0103 10 6 5.4251 2.8111 5.3936 11 6 6.4555 1.7854 4.9201 12 6 6.0271 0.3993 4.4369 13 6 7.3931 -0.1026 4.9391 14 7 7.3287 -1.4026 5.6114 15 6 7.8192 -2.5199 4.9899 16 1 8.2531 -2.4428 4.0040 17 6 7.7586 -3.7516 5.6272 18 7 7.2292 -3.8456 6.8286 19 14 8.4270 -5.2759 4.7792 20 1 9.8726 -5.0901 4.4944 21 1 8.2438 -6.4548 5.6634 22 1 7.6957 -5.4946 3.5054 23 6 7.3940 1.0930 5.9089 24 6 6.9758 2.8381 3.9407 25 6 2.8632 3.9852 -0.0907 26 6 3.2922 5.4267 -0.1869 27 7 2.0308 3.4805 -0.9807 28 7 1.6343 2.2614 -0.9351 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 3.2499 1.1719 1.7571 35 1 4.2832 2.0497 3.1025 36 1 5.5881 4.5597 4.0457 37 1 4.4366 2.3878 5.5723 38 1 5.7751 3.4354 6.2156 39 1 5.1807 -0.0130 4.9861 40 1 5.9062 0.3309 3.3558 41 1 8.1794 -0.0537 4.1858 42 1 6.9388 -1.4719 6.4969 43 1 7.1866 -4.7064 7.2738 44 1 8.3652 1.5787 6.0037 45 1 6.9322 0.8770 6.8724 46 1 7.7617 3.4700 4.3544 47 1 7.2263 2.4364 2.9588 48 1 4.2490 5.4871 -0.7055 49 1 2.5427 5.9926 -0.7402 50 1 3.3951 5.8428 0.8153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964532046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:06 Heat of formation + Delta-G solvation = 50.027159 kcal Electronic energy + Delta-G solvation = -29875.839387 eV Core-core repulsion = 25904.192088 eV Total energy + Delta-G solvation = -3971.647299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58959 -41.69806 -40.18017 -37.30914 -36.27014 -35.27078 -34.79545 -33.64340 -32.36083 -31.38339 -28.91507 -27.19295 -26.75112 -26.54186 -26.09489 -24.50332 -24.32761 -23.13029 -21.87122 -21.22762 -19.45954 -18.90715 -18.75359 -18.51945 -17.13061 -16.87996 -16.83719 -16.68637 -16.21415 -16.02072 -15.85848 -15.59280 -15.22717 -15.15223 -14.96747 -14.49073 -14.38726 -14.00580 -13.89127 -13.63236 -13.43311 -13.28991 -13.13765 -12.98855 -12.93499 -12.79819 -12.75813 -12.40124 -12.22725 -12.18598 -12.10122 -11.86492 -11.81268 -11.49521 -11.41458 -11.14552 -11.04046 -10.82668 -10.69040 -10.64760 -10.54616 -10.09611 -8.94907 -7.93274 -5.20622 -0.85398 -0.29295 1.48434 1.50124 1.55078 1.56370 1.81184 2.39280 2.57569 2.79247 3.07355 3.23081 3.38415 3.45516 3.52419 3.57031 3.62418 3.70668 3.87047 3.96097 4.00203 4.07157 4.32079 4.33861 4.36900 4.38338 4.53282 4.59842 4.62182 4.65584 4.67764 4.85923 4.87408 4.88950 4.91542 4.99660 5.02943 5.04896 5.05060 5.11329 5.12919 5.15290 5.23381 5.28028 5.39111 5.44759 5.52157 5.63853 5.75226 6.29515 6.30372 6.93969 7.35598 7.51299 8.14391 8.36420 9.29770 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.002788 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.285972 B =10039.901522 C =12244.358048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.061 3.939 4 C -0.067 4.067 5 C -0.139 4.139 6 C 0.569 3.431 7 O -0.541 6.541 8 N -0.689 5.689 9 C 0.126 3.874 10 C -0.120 4.120 11 C -0.093 4.093 12 C -0.132 4.132 13 C 0.145 3.855 14 N -0.728 5.728 15 C -0.242 4.242 16 H 0.074 0.926 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.968 3.032 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.277 1.277 23 C -0.131 4.131 24 C -0.122 4.122 25 C 0.106 3.894 26 C -0.099 4.099 27 N -0.268 5.268 28 N -0.243 5.243 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.183 0.817 35 H 0.410 0.590 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 16.184 -9.616 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.085 4.085 4 C -0.097 4.097 5 C -0.154 4.154 6 C 0.354 3.646 7 O -0.419 6.419 8 N -0.340 5.340 9 C 0.021 3.979 10 C -0.157 4.157 11 C -0.094 4.094 12 C -0.173 4.173 13 C 0.036 3.964 14 N -0.365 5.365 15 C -0.374 4.374 16 H 0.092 0.908 17 C -0.267 4.267 18 N -0.620 5.620 19 Si 0.797 3.203 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.203 1.203 23 C -0.170 4.170 24 C -0.161 4.161 25 C -0.039 4.039 26 C -0.157 4.157 27 N -0.109 5.109 28 N -0.085 5.085 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.201 0.799 35 H 0.247 0.753 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.125 0.875 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.964 17.116 -11.180 23.198 hybrid contribution 1.016 -1.876 1.310 2.503 sum -9.948 15.240 -9.870 20.704 Atomic orbital electron populations 1.21692 0.93429 1.03133 1.01966 1.20653 0.97519 0.87266 1.05570 1.23314 0.94142 0.99542 0.91455 1.22941 0.93307 0.94802 0.98632 1.21106 1.00411 0.95668 0.98181 1.17861 0.80515 0.84959 0.81222 1.90742 1.55330 1.19490 1.76378 1.45555 1.46403 1.18748 1.23327 1.21908 0.88954 0.99042 0.88002 1.23156 0.99556 0.97134 0.95895 1.22226 0.97269 0.92783 0.97112 1.23371 0.99716 0.94094 1.00101 1.21899 0.95801 0.83873 0.94853 1.42590 1.71566 1.03272 1.19109 1.19630 1.30662 0.87486 0.99603 0.90829 1.25499 1.03010 1.00618 0.97526 1.69795 1.52393 1.24518 1.15293 0.85300 0.78289 0.79240 0.77484 1.20723 1.22359 1.20266 1.23162 0.99412 0.96631 0.97812 1.23179 0.97058 0.96869 0.98952 1.23369 0.91482 0.99507 0.89522 1.20927 1.02181 0.87254 1.05298 1.73041 1.10173 1.06066 1.21641 1.72691 1.17830 0.97710 1.20298 0.92804 0.90156 0.92990 0.88586 0.87343 0.79936 0.75252 0.87620 0.90284 0.87002 0.90813 0.91845 0.91676 0.79442 0.94081 0.91435 0.90907 0.87547 0.91822 0.89296 0.89748 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.78 71.98 0.70 -1.16 16 2 C -0.07 -0.92 6.35 29.85 0.19 -0.73 16 3 C 0.06 1.11 6.25 42.62 0.27 1.38 16 4 C -0.07 -1.08 9.29 22.79 0.21 -0.87 16 5 C -0.14 -2.76 5.92 -19.83 -0.12 -2.88 16 6 C 0.57 11.53 7.73 86.87 0.67 12.20 16 7 O -0.54 -13.37 13.14 -3.75 -0.05 -13.41 16 8 N -0.69 -11.56 5.22 -442.11 -2.31 -13.87 16 9 C 0.13 2.15 4.32 45.63 0.20 2.34 16 10 C -0.12 -1.98 7.59 30.89 0.23 -1.74 16 11 C -0.09 -2.02 1.02 -52.32 -0.05 -2.07 16 12 C -0.13 -3.63 6.97 30.88 0.22 -3.41 16 13 C 0.15 5.18 4.48 45.63 0.20 5.38 16 14 N -0.73 -34.68 5.40 -319.93 -1.73 -36.41 16 15 C -0.24 -12.90 9.97 84.04 0.84 -12.06 16 16 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 17 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 18 N -0.97 -57.63 13.06 21.65 0.28 -57.34 16 19 Si 0.97 44.74 29.55 68.60 2.03 46.76 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 C -0.13 -3.71 7.59 30.88 0.23 -3.48 16 24 C -0.12 -2.32 7.64 30.88 0.24 -2.08 16 25 C 0.11 2.38 6.91 42.92 0.30 2.67 16 26 C -0.10 -1.88 8.97 71.24 0.64 -1.24 16 27 N -0.27 -6.78 11.42 -46.94 -0.54 -7.32 16 28 N -0.24 -5.83 11.04 -47.68 -0.53 -6.36 16 29 H 0.05 0.84 7.96 -2.39 -0.02 0.82 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 0.96 7.92 -2.39 -0.02 0.94 16 34 H 0.18 1.77 6.60 -2.91 -0.02 1.76 16 35 H 0.41 5.69 6.23 -92.71 -0.58 5.11 16 36 H 0.11 1.87 7.47 -2.39 -0.02 1.85 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 41 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 42 H 0.37 19.22 7.92 -92.71 -0.73 18.48 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 2.18 8.12 -2.39 -0.02 2.17 16 46 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.10 1.98 5.95 -2.39 -0.01 1.97 16 Total: -1.00 -68.31 406.47 2.25 -66.06 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.35 Total: 33.30 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 5.43 Total: -11.41 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.81 Total: -121.29 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.05 Total: -13.41 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.31 2.25 -66.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964532046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.088 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds