Wall clock time and date at job start Wed Apr 1 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31890 * 118.95468 * 2 1 4 4 C 1.32133 * 120.96722 * 180.02562 * 3 2 1 5 5 C 1.39964 * 118.92146 * 359.97438 * 4 3 2 6 6 C 1.47838 * 120.93565 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99878 * 185.49580 * 6 5 4 8 8 N 1.34769 * 120.00069 * 5.49943 * 6 5 4 9 9 C 1.46503 * 120.00007 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.49935 * 325.06113 * 9 8 6 11 11 C 1.53191 * 109.49663 * 85.16228 * 9 8 6 12 12 N 1.46922 * 108.77639 * 174.58690 * 11 9 8 13 13 C 1.36930 * 120.63186 * 126.36958 * 12 11 9 14 14 H 1.07994 * 120.00160 * 332.04197 * 13 12 11 15 15 C 1.38820 * 119.99938 * 152.04398 * 13 12 11 16 16 N 1.31621 * 119.99698 * 160.57135 * 15 13 12 17 17 Si 1.86799 * 120.00096 * 340.56345 * 15 13 12 18 18 H 1.48499 * 109.47052 * 93.45205 * 17 15 13 19 19 H 1.48495 * 109.47185 * 213.45552 * 17 15 13 20 20 H 1.48504 * 109.47135 * 333.45407 * 17 15 13 21 21 C 1.46932 * 118.73627 * 306.38989 * 12 11 9 22 22 C 1.53193 * 108.77587 * 53.61162 * 21 12 11 23 23 C 1.53036 * 109.30895 * 305.36143 * 22 21 12 24 24 H 1.09001 * 109.46403 * 301.34362 * 23 22 21 25 25 C 1.53005 * 109.46004 * 181.38411 * 23 22 21 26 26 C 1.39929 * 118.12577 * 0.02562 * 5 4 3 27 27 C 1.50695 * 120.53895 * 179.97438 * 26 5 4 28 28 C 1.53000 * 117.50021 * 179.79467 * 27 26 5 29 29 C 1.52999 * 117.50005 * 248.45312 * 27 26 5 30 30 N 1.31857 * 118.95237 * 180.25371 * 2 1 3 31 31 H 1.09002 * 109.46873 * 89.99994 * 1 2 3 32 32 H 1.08996 * 109.46989 * 210.00205 * 1 2 3 33 33 H 1.09000 * 109.46901 * 329.99891 * 1 2 3 34 34 H 1.07992 * 120.53498 * 180.02562 * 4 3 2 35 35 H 0.96997 * 120.00050 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.58865 * 294.37547 * 11 9 8 37 37 H 1.09002 * 109.58450 * 54.79788 * 11 9 8 38 38 H 0.96998 * 119.99829 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.58922 * 293.82254 * 21 12 11 40 40 H 1.09002 * 109.70020 * 173.46298 * 21 12 11 41 41 H 1.08997 * 109.49472 * 185.41269 * 22 21 12 42 42 H 1.08997 * 109.49598 * 65.31364 * 22 21 12 43 43 H 1.08996 * 109.47036 * 299.93794 * 25 23 22 44 44 H 1.09004 * 109.46666 * 59.93351 * 25 23 22 45 45 H 1.09000 * 109.47059 * 179.97438 * 25 23 22 46 46 H 1.08999 * 115.55568 * 34.12177 * 27 26 5 47 47 H 1.09003 * 117.49768 * 215.00311 * 28 27 26 48 48 H 1.08996 * 117.49871 * 0.02562 * 28 27 26 49 49 H 1.09004 * 117.49822 * 359.97438 * 29 27 26 50 50 H 1.09001 * 117.50623 * 144.97395 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6639 -0.0002 -0.0016 7 8 6.2715 -1.0481 -0.1024 8 7 6.3379 1.1616 0.1092 9 6 7.8029 1.1615 0.1086 10 1 8.1669 0.2671 0.6141 11 6 8.3136 1.1772 -1.3355 12 7 9.7769 1.3081 -1.3183 13 6 10.5655 0.4119 -1.9890 14 1 10.2204 -0.5993 -2.1460 15 6 11.8087 0.8031 -2.4670 16 7 12.7163 -0.1040 -2.7602 17 14 12.1935 2.6168 -2.6943 18 1 12.8568 3.1390 -1.4727 19 1 13.0970 2.7888 -3.8602 20 1 10.9324 3.3645 -2.9309 21 6 10.3780 2.4188 -0.5672 22 6 9.8441 2.3892 0.8684 23 6 8.3141 2.4051 0.8398 24 1 7.9698 3.2992 0.3199 25 6 7.7775 2.4104 2.2726 26 6 3.4661 -1.2003 -0.0005 27 6 4.1856 -2.5244 -0.0011 28 6 3.3305 -3.7931 0.0038 29 6 4.0845 -3.3828 -1.2635 30 7 2.1453 -1.1538 -0.0051 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 3.9817 2.1493 -0.0001 35 1 5.8530 1.9979 0.1893 36 1 8.0358 0.2472 -1.8315 37 1 7.8774 2.0222 -1.8682 38 1 13.5848 0.1693 -3.0946 39 1 10.1101 3.3650 -1.0373 40 1 11.4625 2.3104 -0.5560 41 1 10.2070 3.2630 1.4095 42 1 10.1894 1.4831 1.3662 43 1 8.1211 1.5162 2.7926 44 1 8.1415 3.2961 2.7935 45 1 6.6878 2.4222 2.2524 46 1 5.1256 -2.5489 0.5502 47 1 3.7080 -4.6523 0.5584 48 1 2.2475 -3.6701 0.0070 49 1 3.4972 -2.9900 -2.0935 50 1 4.9581 -3.9718 -1.5431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968603141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:48 Heat of formation + Delta-G solvation = 62.663759 kcal Electronic energy + Delta-G solvation = -30835.002892 eV Core-core repulsion = 26863.903557 eV Total energy + Delta-G solvation = -3971.099335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65676 -39.74353 -38.01996 -37.29905 -34.77316 -33.95184 -33.30578 -32.99548 -31.43662 -29.92115 -28.77127 -27.63099 -25.64104 -24.33207 -23.77866 -22.75854 -22.33471 -21.40981 -21.15435 -20.61719 -19.79467 -18.04525 -17.70584 -16.84503 -16.57384 -15.85605 -15.65957 -15.26799 -15.21361 -14.84678 -14.57415 -14.11788 -13.96833 -13.85318 -13.69570 -13.49945 -13.25464 -12.92736 -12.83778 -12.67704 -12.26171 -12.15220 -12.11162 -11.85414 -11.72565 -11.65043 -11.49200 -11.33902 -11.01354 -10.94364 -10.70947 -10.63410 -10.36574 -10.15272 -9.95729 -9.78541 -9.62163 -9.56975 -9.52329 -9.45131 -9.04694 -8.55900 -6.98654 -5.93700 -3.31750 0.18602 0.70957 2.75864 3.04837 3.30189 3.41181 3.47059 3.49308 3.50665 3.65206 3.82275 4.09381 4.46916 4.52205 4.62305 4.76637 4.86598 4.91768 4.93029 5.00672 5.01658 5.09750 5.15962 5.17738 5.20441 5.41437 5.48206 5.58496 5.61256 5.68999 5.75567 5.77929 5.79250 5.87883 5.97511 6.02492 6.06873 6.07032 6.15043 6.22355 6.30798 6.43418 6.45181 6.55400 6.61122 6.64613 6.71811 6.89871 7.48994 7.73096 7.96009 8.20834 8.34859 8.94049 9.71659 10.07078 11.22252 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.002957 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.960761 B = 9466.586103 C =10428.487873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.336 3.664 3 N -0.528 5.528 4 C 0.187 3.813 5 C -0.241 4.241 6 C 0.566 3.434 7 O -0.513 6.513 8 N -0.714 5.714 9 C 0.133 3.867 10 H 0.094 0.906 11 C 0.144 3.856 12 N -0.601 5.601 13 C -0.259 4.259 14 H 0.087 0.913 15 C 0.024 3.976 16 N -0.908 5.908 17 Si 0.884 3.116 18 H -0.289 1.289 19 H -0.304 1.304 20 H -0.271 1.271 21 C 0.121 3.879 22 C -0.126 4.126 23 C -0.092 4.092 24 H 0.069 0.931 25 C -0.144 4.144 26 C 0.270 3.730 27 C -0.121 4.121 28 C -0.164 4.164 29 C -0.145 4.145 30 N -0.521 5.521 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.171 0.829 35 H 0.392 0.608 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.150 0.850 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.090 0.910 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.620 2.647 9.200 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 N -0.242 5.242 4 C 0.020 3.980 5 C -0.249 4.249 6 C 0.350 3.650 7 O -0.389 6.389 8 N -0.365 5.365 9 C 0.028 3.972 10 H 0.112 0.888 11 C 0.017 3.983 12 N -0.324 5.324 13 C -0.387 4.387 14 H 0.104 0.896 15 C -0.175 4.175 16 N -0.551 5.551 17 Si 0.715 3.285 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.196 1.196 21 C -0.004 4.004 22 C -0.166 4.166 23 C -0.112 4.112 24 H 0.087 0.913 25 C -0.202 4.202 26 C 0.123 3.877 27 C -0.140 4.140 28 C -0.202 4.202 29 C -0.183 4.183 30 N -0.236 5.236 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.188 0.812 35 H 0.227 0.773 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.167 0.833 47 H 0.117 0.883 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.003 1.838 9.034 24.781 hybrid contribution 1.113 1.711 -0.180 2.049 sum -21.890 3.549 8.854 23.878 Atomic orbital electron populations 1.20627 0.85341 1.04415 1.04154 1.23480 0.98391 0.83271 0.87847 1.68271 1.09632 1.30135 1.16187 1.23438 0.89662 0.97590 0.87333 1.21617 0.96479 0.95933 1.10837 1.17667 0.85517 0.84481 0.77308 1.90789 1.69073 1.30606 1.48442 1.45987 1.08211 1.08122 1.74221 1.21793 0.76567 0.99381 0.99480 0.88801 1.21217 0.84676 0.99993 0.92423 1.44270 1.00301 1.31084 1.56764 1.18942 0.98121 0.91974 1.29644 0.89561 1.25283 0.96463 0.97119 0.98663 1.69829 1.04920 1.32741 1.47630 0.86933 0.77646 0.87416 0.76511 1.21638 1.23213 1.19572 1.21416 0.98266 0.90814 0.89936 1.22071 0.93328 1.01760 0.99420 1.21315 0.97019 0.97346 0.95480 0.91267 1.21846 1.00137 1.01796 0.96403 1.21008 0.88270 0.93937 0.84440 1.21338 1.01097 0.86028 1.05530 1.23031 0.99381 0.96770 1.00978 1.22893 1.02839 1.01505 0.91048 1.68102 1.09119 1.30057 1.16318 0.89268 0.89368 0.89345 0.81171 0.77343 0.91298 0.96003 0.92760 0.95594 0.90761 0.92169 0.91323 0.92620 0.92759 0.93264 0.83262 0.88347 0.87678 0.89103 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.01 0.37 -0.21 16 2 C 0.34 3.58 7.64 -157.06 -1.20 2.38 16 3 N -0.53 -5.77 10.32 -10.39 -0.11 -5.88 16 4 C 0.19 1.92 10.80 -16.78 -0.18 1.74 16 5 C -0.24 -2.98 5.91 -104.69 -0.62 -3.60 16 6 C 0.57 8.02 7.72 -12.34 -0.10 7.92 16 7 O -0.51 -9.02 13.21 5.32 0.07 -8.95 16 8 N -0.71 -8.97 4.32 -54.64 -0.24 -9.20 16 9 C 0.13 2.10 2.06 -67.81 -0.14 1.96 16 10 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 11 C 0.14 2.85 6.09 -3.71 -0.02 2.83 16 12 N -0.60 -14.12 2.77 -172.32 -0.48 -14.59 16 13 C -0.26 -7.29 10.04 -15.06 -0.15 -7.44 16 14 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 15 C 0.02 0.68 5.25 -17.43 -0.09 0.59 16 16 N -0.91 -28.03 13.97 55.49 0.78 -27.25 16 17 Si 0.88 22.25 24.33 -169.99 -4.14 18.11 16 18 H -0.29 -6.95 6.65 56.52 0.38 -6.58 16 19 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 20 H -0.27 -6.64 6.52 56.52 0.37 -6.27 16 21 C 0.12 2.54 4.19 -3.71 -0.02 2.52 16 22 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 23 C -0.09 -1.28 2.27 -90.58 -0.21 -1.48 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 C -0.14 -1.62 9.02 37.16 0.34 -1.28 16 26 C 0.27 3.48 6.53 -81.82 -0.53 2.94 16 27 C -0.12 -1.54 4.77 -91.78 -0.44 -1.98 16 28 C -0.16 -1.70 10.05 -26.70 -0.27 -1.97 16 29 C -0.14 -1.67 10.24 -26.70 -0.27 -1.94 16 30 N -0.52 -6.23 9.34 -6.67 -0.06 -6.29 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.17 1.19 6.57 -52.49 -0.35 0.85 16 35 H 0.39 3.64 6.48 -40.82 -0.26 3.38 16 36 H 0.07 1.50 7.93 -51.93 -0.41 1.09 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 39 H 0.03 0.54 6.99 -51.93 -0.36 0.17 16 40 H 0.07 1.73 4.51 -51.93 -0.23 1.49 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.48 7.36 -51.93 -0.38 0.09 16 46 H 0.15 2.13 6.12 -51.93 -0.32 1.81 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.10 1.07 7.58 -51.93 -0.39 0.68 16 49 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -33.31 391.97 -9.73 -43.04 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.80 Total: 4.34 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.67 Total: 0.77 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.11 Total: -63.21 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.31 -9.73 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968603141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.704 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds