Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31890 * 118.95468 * 2 1 4 4 C 1.32133 * 120.96722 * 180.02562 * 3 2 1 5 5 C 1.39964 * 118.92146 * 359.97438 * 4 3 2 6 6 C 1.47838 * 120.93565 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99878 * 185.49580 * 6 5 4 8 8 N 1.34769 * 120.00069 * 5.49943 * 6 5 4 9 9 C 1.46503 * 120.00007 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.49935 * 325.06113 * 9 8 6 11 11 C 1.53191 * 109.49663 * 85.16228 * 9 8 6 12 12 N 1.46922 * 108.77639 * 174.58690 * 11 9 8 13 13 C 1.36930 * 120.63186 * 126.36958 * 12 11 9 14 14 H 1.07994 * 120.00160 * 332.04197 * 13 12 11 15 15 C 1.38820 * 119.99938 * 152.04398 * 13 12 11 16 16 N 1.31621 * 119.99698 * 160.57135 * 15 13 12 17 17 Si 1.86799 * 120.00096 * 340.56345 * 15 13 12 18 18 H 1.48499 * 109.47052 * 93.45205 * 17 15 13 19 19 H 1.48495 * 109.47185 * 213.45552 * 17 15 13 20 20 H 1.48504 * 109.47135 * 333.45407 * 17 15 13 21 21 C 1.46932 * 118.73627 * 306.38989 * 12 11 9 22 22 C 1.53193 * 108.77587 * 53.61162 * 21 12 11 23 23 C 1.53036 * 109.30895 * 305.36143 * 22 21 12 24 24 H 1.09001 * 109.46403 * 301.34362 * 23 22 21 25 25 C 1.53005 * 109.46004 * 181.38411 * 23 22 21 26 26 C 1.39929 * 118.12577 * 0.02562 * 5 4 3 27 27 C 1.50695 * 120.53895 * 179.97438 * 26 5 4 28 28 C 1.53000 * 117.50021 * 179.79467 * 27 26 5 29 29 C 1.52999 * 117.50005 * 248.45312 * 27 26 5 30 30 N 1.31857 * 118.95237 * 180.25371 * 2 1 3 31 31 H 1.09002 * 109.46873 * 89.99994 * 1 2 3 32 32 H 1.08996 * 109.46989 * 210.00205 * 1 2 3 33 33 H 1.09000 * 109.46901 * 329.99891 * 1 2 3 34 34 H 1.07992 * 120.53498 * 180.02562 * 4 3 2 35 35 H 0.96997 * 120.00050 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.58865 * 294.37547 * 11 9 8 37 37 H 1.09002 * 109.58450 * 54.79788 * 11 9 8 38 38 H 0.96998 * 119.99829 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.58922 * 293.82254 * 21 12 11 40 40 H 1.09002 * 109.70020 * 173.46298 * 21 12 11 41 41 H 1.08997 * 109.49472 * 185.41269 * 22 21 12 42 42 H 1.08997 * 109.49598 * 65.31364 * 22 21 12 43 43 H 1.08996 * 109.47036 * 299.93794 * 25 23 22 44 44 H 1.09004 * 109.46666 * 59.93351 * 25 23 22 45 45 H 1.09000 * 109.47059 * 179.97438 * 25 23 22 46 46 H 1.08999 * 115.55568 * 34.12177 * 27 26 5 47 47 H 1.09003 * 117.49768 * 215.00311 * 28 27 26 48 48 H 1.08996 * 117.49871 * 0.02562 * 28 27 26 49 49 H 1.09004 * 117.49822 * 359.97438 * 29 27 26 50 50 H 1.09001 * 117.50623 * 144.97395 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6639 -0.0002 -0.0016 7 8 6.2715 -1.0481 -0.1024 8 7 6.3379 1.1616 0.1092 9 6 7.8029 1.1615 0.1086 10 1 8.1669 0.2671 0.6141 11 6 8.3136 1.1772 -1.3355 12 7 9.7769 1.3081 -1.3183 13 6 10.5655 0.4119 -1.9890 14 1 10.2204 -0.5993 -2.1460 15 6 11.8087 0.8031 -2.4670 16 7 12.7163 -0.1040 -2.7602 17 14 12.1935 2.6168 -2.6943 18 1 12.8568 3.1390 -1.4727 19 1 13.0970 2.7888 -3.8602 20 1 10.9324 3.3645 -2.9309 21 6 10.3780 2.4188 -0.5672 22 6 9.8441 2.3892 0.8684 23 6 8.3141 2.4051 0.8398 24 1 7.9698 3.2992 0.3199 25 6 7.7775 2.4104 2.2726 26 6 3.4661 -1.2003 -0.0005 27 6 4.1856 -2.5244 -0.0011 28 6 3.3305 -3.7931 0.0038 29 6 4.0845 -3.3828 -1.2635 30 7 2.1453 -1.1538 -0.0051 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 3.9817 2.1493 -0.0001 35 1 5.8530 1.9979 0.1893 36 1 8.0358 0.2472 -1.8315 37 1 7.8774 2.0222 -1.8682 38 1 13.5848 0.1693 -3.0946 39 1 10.1101 3.3650 -1.0373 40 1 11.4625 2.3104 -0.5560 41 1 10.2070 3.2630 1.4095 42 1 10.1894 1.4831 1.3662 43 1 8.1211 1.5162 2.7926 44 1 8.1415 3.2961 2.7935 45 1 6.6878 2.4222 2.2524 46 1 5.1256 -2.5489 0.5502 47 1 3.7080 -4.6523 0.5584 48 1 2.2475 -3.6701 0.0070 49 1 3.4972 -2.9900 -2.0935 50 1 4.9581 -3.9718 -1.5431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968603141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = 40.689164 kcal Electronic energy + Delta-G solvation = -30835.955781 eV Core-core repulsion = 26863.903557 eV Total energy + Delta-G solvation = -3972.052225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.55384 -40.94441 -39.35659 -38.26835 -36.30689 -35.00030 -34.37120 -34.02201 -33.41123 -31.14492 -29.73488 -29.10188 -26.59442 -25.71659 -25.05084 -24.02235 -23.26679 -22.92725 -22.14324 -21.77756 -21.16766 -19.00485 -18.76068 -18.73737 -17.50472 -17.24834 -16.88290 -16.66747 -16.17996 -16.08729 -15.73250 -15.54465 -15.26116 -15.10182 -14.98908 -14.72226 -14.43568 -14.31562 -13.78979 -13.61437 -13.53062 -13.36809 -13.26543 -13.01951 -12.79555 -12.70863 -12.62817 -12.52230 -12.50155 -12.37368 -12.20339 -11.78445 -11.65224 -11.56344 -11.34154 -11.27938 -11.25416 -10.90341 -10.66180 -10.48404 -10.41729 -10.13678 -8.92681 -8.17906 -5.52903 -0.70542 -0.15515 1.29496 1.41436 1.51418 1.71746 1.92850 2.40598 2.50106 2.70074 2.86563 2.92565 3.05318 3.23996 3.31765 3.56514 3.68519 3.75445 3.91274 3.95371 3.99786 4.01695 4.05584 4.16439 4.31294 4.41049 4.51474 4.53710 4.57842 4.69989 4.70403 4.81898 4.82713 4.84879 4.85927 4.95139 4.97178 4.98814 5.04409 5.09401 5.13922 5.16658 5.24348 5.31535 5.34393 5.41277 5.56308 5.77173 5.84133 6.10206 6.44899 6.88354 6.89017 7.14752 7.59131 7.96829 9.02505 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.002957 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.960761 B = 9466.586103 C =10428.487873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.331 3.669 3 N -0.533 5.533 4 C 0.201 3.799 5 C -0.258 4.258 6 C 0.566 3.434 7 O -0.556 6.556 8 N -0.697 5.697 9 C 0.149 3.851 10 H 0.058 0.942 11 C 0.144 3.856 12 N -0.616 5.616 13 C -0.253 4.253 14 H 0.036 0.964 15 C -0.038 4.038 16 N -0.961 5.961 17 Si 0.959 3.041 18 H -0.268 1.268 19 H -0.313 1.313 20 H -0.254 1.254 21 C 0.113 3.887 22 C -0.120 4.120 23 C -0.084 4.084 24 H 0.096 0.904 25 C -0.137 4.137 26 C 0.258 3.742 27 C -0.139 4.139 28 C -0.141 4.141 29 C -0.151 4.151 30 N -0.531 5.531 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.207 0.793 35 H 0.414 0.586 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.127 0.873 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.090 0.910 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.450 6.539 10.770 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 N -0.248 5.248 4 C 0.033 3.967 5 C -0.266 4.266 6 C 0.353 3.647 7 O -0.435 6.435 8 N -0.349 5.349 9 C 0.043 3.957 10 H 0.076 0.924 11 C 0.018 3.982 12 N -0.341 5.341 13 C -0.383 4.383 14 H 0.054 0.946 15 C -0.232 4.232 16 N -0.607 5.607 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.242 1.242 20 H -0.178 1.178 21 C -0.011 4.011 22 C -0.160 4.160 23 C -0.103 4.103 24 H 0.114 0.886 25 C -0.195 4.195 26 C 0.113 3.887 27 C -0.158 4.158 28 C -0.178 4.178 29 C -0.189 4.189 30 N -0.246 5.246 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.223 0.777 35 H 0.252 0.748 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.145 0.855 47 H 0.130 0.870 48 H 0.130 0.870 49 H 0.108 0.892 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.908 5.782 10.646 28.601 hybrid contribution 1.889 0.377 -0.672 2.041 sum -24.018 6.159 9.974 26.726 Atomic orbital electron populations 1.20793 0.82620 1.05610 1.05307 1.24294 1.00051 0.82882 0.86155 1.68422 1.09667 1.30054 1.16630 1.23953 0.89579 0.97964 0.85196 1.21443 0.95035 0.96932 1.13148 1.17992 0.86394 0.84104 0.76237 1.90788 1.70144 1.32306 1.50301 1.45670 1.06777 1.08814 1.73637 1.21308 0.78306 0.99575 0.96518 0.92387 1.21288 0.82901 0.98878 0.95143 1.44335 1.01471 1.31135 1.57154 1.18764 0.98731 0.91092 1.29682 0.94594 1.26015 0.96208 1.02144 0.98881 1.69988 1.05580 1.35340 1.49799 0.85738 0.77844 0.81202 0.76568 1.19413 1.24207 1.17807 1.21557 0.96943 0.90086 0.92533 1.21996 0.95250 1.02488 0.96242 1.21287 0.95058 0.96591 0.97376 0.88570 1.21786 1.01377 1.02184 0.94103 1.21081 0.88981 0.94058 0.84630 1.21236 1.01069 0.87408 1.06098 1.23076 0.99342 0.95881 0.99511 1.22891 1.03090 1.01611 0.91278 1.68167 1.08458 1.30853 1.17128 0.87904 0.88425 0.87884 0.77678 0.74794 0.94972 0.93866 0.92861 0.93717 0.93285 0.88515 0.93351 0.94119 0.90482 0.91220 0.85519 0.86963 0.87037 0.89166 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.31 71.24 0.73 -0.17 16 2 C 0.33 6.32 7.64 138.70 1.06 7.38 16 3 N -0.53 -10.13 10.32 -186.79 -1.93 -12.06 16 4 C 0.20 3.57 10.80 85.07 0.92 4.49 16 5 C -0.26 -6.17 5.91 -19.91 -0.12 -6.29 16 6 C 0.57 16.15 7.72 86.79 0.67 16.82 16 7 O -0.56 -20.92 13.21 -3.88 -0.05 -20.97 16 8 N -0.70 -16.36 4.32 -445.05 -1.92 -18.29 16 9 C 0.15 4.63 2.06 45.07 0.09 4.72 16 10 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 11 C 0.14 5.76 6.09 86.36 0.53 6.29 16 12 N -0.62 -29.40 2.77 -699.10 -1.93 -31.34 16 13 C -0.25 -15.05 10.04 84.04 0.84 -14.20 16 14 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 15 C -0.04 -2.29 5.25 84.86 0.45 -1.84 16 16 N -0.96 -62.26 13.97 21.65 0.30 -61.95 16 17 Si 0.96 46.52 24.33 68.60 1.67 48.19 16 18 H -0.27 -12.01 6.65 99.48 0.66 -11.35 16 19 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 20 H -0.25 -11.50 6.52 99.48 0.65 -10.85 16 21 C 0.11 4.53 4.19 86.36 0.36 4.90 16 22 C -0.12 -3.64 5.36 30.67 0.16 -3.47 16 23 C -0.08 -2.03 2.27 -10.76 -0.02 -2.06 16 24 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 25 C -0.14 -2.50 9.02 71.98 0.65 -1.85 16 26 C 0.26 6.63 6.53 42.92 0.28 6.91 16 27 C -0.14 -3.69 4.77 -11.54 -0.06 -3.75 16 28 C -0.14 -2.92 10.05 30.62 0.31 -2.61 16 29 C -0.15 -3.65 10.24 30.62 0.31 -3.34 16 30 N -0.53 -12.07 9.34 -175.03 -1.63 -13.70 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.21 1.95 6.57 -2.91 -0.02 1.93 16 35 H 0.41 6.09 6.48 -92.71 -0.60 5.49 16 36 H 0.03 1.48 7.93 -2.39 -0.02 1.47 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.04 1.65 6.99 -2.39 -0.02 1.64 16 40 H 0.05 2.21 4.51 -2.39 -0.01 2.20 16 41 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.01 7.36 -2.39 -0.02 0.99 16 46 H 0.13 3.94 6.12 -2.39 -0.01 3.93 16 47 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.11 2.18 7.58 -2.39 -0.02 2.16 16 49 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -79.14 391.97 1.93 -77.21 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.26 Total: 20.97 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 7.17 Total: 11.93 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -7.12 Total: -137.33 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Total: -79.14 1.93 -77.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968603141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.899 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds