Wall clock time and date at job start Wed Apr 1 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31882 * 118.95211 * 2 1 4 4 C 1.32135 * 120.96594 * 179.71715 * 3 2 1 5 5 C 1.39974 * 118.92018 * 0.54224 * 4 3 2 6 6 C 1.47832 * 120.93815 * 179.71260 * 5 4 3 7 7 O 1.21546 * 120.00094 * 183.83072 * 6 5 4 8 8 N 1.34780 * 120.00073 * 3.83396 * 6 5 4 9 9 C 1.46494 * 120.00168 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.64312 * 323.31141 * 9 8 6 11 11 C 1.54319 * 110.72108 * 86.45121 * 9 8 6 12 12 N 1.47021 * 107.27122 * 96.17116 * 11 9 8 13 13 C 1.36944 * 125.64856 * 178.90525 * 12 11 9 14 14 H 1.07997 * 119.99623 * 180.02562 * 13 12 11 15 15 C 1.38810 * 120.00105 * 0.02625 * 13 12 11 16 16 N 1.31621 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99878 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47327 * 59.99811 * 17 15 13 19 19 H 1.48510 * 109.46833 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47131 * 299.99730 * 17 15 13 21 21 C 1.47422 * 108.70379 * 358.94073 * 12 11 9 22 22 C 1.54909 * 104.83266 * 24.12969 * 21 12 11 23 23 C 1.52997 * 111.00679 * 204.91752 * 22 21 12 24 24 C 1.53003 * 111.00606 * 81.06437 * 22 21 12 25 25 C 1.39920 * 118.12255 * 359.73012 * 5 4 3 26 26 C 1.50708 * 120.53962 * 179.97438 * 25 5 4 27 27 C 1.53001 * 117.49867 * 178.41369 * 26 25 5 28 28 C 1.52993 * 117.49783 * 109.79031 * 26 25 5 29 29 N 1.31856 * 118.95019 * 180.26609 * 2 1 3 30 30 H 1.08994 * 109.47298 * 269.73526 * 1 2 3 31 31 H 1.08996 * 109.46794 * 29.73833 * 1 2 3 32 32 H 1.09004 * 109.46620 * 149.73148 * 1 2 3 33 33 H 1.07995 * 120.53905 * 180.29541 * 4 3 2 34 34 H 0.97002 * 119.99438 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.88385 * 215.58898 * 11 9 8 36 36 H 1.09002 * 109.88594 * 336.75794 * 11 9 8 37 37 H 0.96994 * 119.99854 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.36859 * 142.96255 * 21 12 11 39 39 H 1.08995 * 110.37090 * 265.29065 * 21 12 11 40 40 H 1.08997 * 109.47184 * 172.19231 * 23 22 21 41 41 H 1.09003 * 109.47273 * 292.19350 * 23 22 21 42 42 H 1.09001 * 109.46932 * 52.19420 * 23 22 21 43 43 H 1.09005 * 109.47054 * 307.80392 * 24 22 21 44 44 H 1.08999 * 109.46929 * 67.80325 * 24 22 21 45 45 H 1.09001 * 109.47031 * 187.80695 * 24 22 21 46 46 H 1.08994 * 115.54691 * 324.11936 * 26 25 5 47 47 H 1.08998 * 117.50194 * 0.02562 * 27 26 25 48 48 H 1.09001 * 117.49674 * 145.02087 * 27 26 25 49 49 H 1.09006 * 117.49998 * 214.98284 * 28 26 25 50 50 H 1.09004 * 117.50309 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 0.0056 5 6 4.1855 -0.0002 0.0000 6 6 5.6639 -0.0002 -0.0005 7 8 6.2715 -1.0502 -0.0757 8 7 6.3378 1.1640 0.0826 9 6 7.8028 1.1640 0.0815 10 1 8.1875 0.3045 0.6306 11 6 8.3478 1.1780 -1.3621 12 7 8.6431 2.5771 -1.7037 13 6 9.1652 3.0157 -2.8913 14 1 9.3470 4.0691 -3.0450 15 6 9.4609 2.1063 -3.8975 16 7 9.2398 0.8224 -3.7099 17 14 10.1737 2.7045 -5.5171 18 1 11.4650 3.3933 -5.2654 19 1 10.3990 1.5448 -6.4171 20 1 9.2244 3.6507 -6.1564 21 6 8.2850 3.4297 -0.5556 22 6 8.3522 2.4889 0.6733 23 6 7.4555 2.9981 1.8035 24 6 9.7943 2.3181 1.1550 25 6 3.4661 -1.2002 -0.0056 26 6 4.1857 -2.5244 -0.0123 27 6 3.3310 -3.7930 0.0194 28 6 4.1198 -3.3707 1.2605 29 7 2.1453 -1.1538 -0.0054 30 1 -0.3633 -0.0047 1.0276 31 1 -0.3633 0.8923 -0.5098 32 1 -0.3633 -0.8876 -0.5180 33 1 3.9817 2.1493 0.0103 34 1 5.8528 2.0019 0.1430 35 1 9.2586 0.5820 -1.4204 36 1 7.5976 0.7801 -2.0455 37 1 9.4468 0.1869 -4.4128 38 1 9.0018 4.2440 -0.4495 39 1 7.2762 3.8246 -0.6763 40 1 7.4124 2.2523 2.5972 41 1 7.8636 3.9278 2.2003 42 1 6.4517 3.1772 1.4183 43 1 10.4248 2.0218 0.3165 44 1 10.1546 3.2616 1.5649 45 1 9.8309 1.5490 1.9266 46 1 5.1099 -2.5542 -0.5892 47 1 2.2482 -3.6700 0.0448 48 1 3.6929 -4.6578 -0.5368 49 1 5.0006 -3.9576 1.5209 50 1 3.5556 -2.9700 2.1028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977539168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:31 Heat of formation + Delta-G solvation = 67.884363 kcal Electronic energy + Delta-G solvation = -31200.887726 eV Core-core repulsion = 27230.014774 eV Total energy + Delta-G solvation = -3970.872953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.48808 -39.66824 -38.00789 -37.18897 -34.12428 -33.66673 -33.15801 -32.82568 -30.72770 -29.31012 -27.94823 -26.84240 -25.66821 -25.42510 -24.08383 -23.20496 -22.32243 -21.10798 -20.88304 -19.99464 -18.94120 -17.86603 -17.41106 -16.70423 -16.46454 -15.70590 -15.57125 -15.17613 -14.80554 -14.61198 -14.16124 -14.00359 -13.91521 -13.85313 -13.46476 -13.29603 -12.81953 -12.71537 -12.57046 -12.11658 -12.04785 -11.98689 -11.75038 -11.67942 -11.55261 -11.41752 -11.36643 -11.11862 -11.02020 -10.77647 -10.61862 -10.39604 -10.30474 -10.21703 -10.04555 -9.91549 -9.66675 -9.42283 -9.39669 -9.36162 -8.65291 -8.52001 -6.84566 -5.70270 -3.05252 0.36179 0.87136 2.96182 3.30783 3.40163 3.44568 3.46299 3.56841 3.66717 3.82115 3.96484 4.21394 4.49089 4.67025 4.78514 4.85890 4.95597 5.00491 5.07000 5.12498 5.22128 5.24814 5.27643 5.31374 5.51824 5.58896 5.62560 5.63213 5.72774 5.75170 5.85767 5.87231 5.97388 6.11999 6.12914 6.14448 6.16793 6.19436 6.29339 6.34361 6.53787 6.57084 6.63495 6.66898 6.80538 6.90096 7.51670 7.60547 7.73904 7.84558 7.89538 8.24288 8.45261 9.20824 9.81530 10.46424 11.40250 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.003313 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.735989 B = 8450.569213 C = 8900.397380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.333 3.667 3 N -0.526 5.526 4 C 0.187 3.813 5 C -0.236 4.236 6 C 0.568 3.432 7 O -0.521 6.521 8 N -0.702 5.702 9 C 0.125 3.875 10 H 0.090 0.910 11 C 0.176 3.824 12 N -0.602 5.602 13 C -0.232 4.232 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.918 5.918 17 Si 0.910 3.090 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.143 3.857 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.126 4.126 25 C 0.268 3.732 26 C -0.121 4.121 27 C -0.164 4.164 28 C -0.149 4.149 29 N -0.522 5.522 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.171 0.829 34 H 0.392 0.608 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.253 0.747 38 H 0.042 0.958 39 H 0.015 0.985 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.156 0.844 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.304 -2.198 13.009 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 N -0.241 5.241 4 C 0.020 3.980 5 C -0.244 4.244 6 C 0.353 3.647 7 O -0.399 6.399 8 N -0.353 5.353 9 C 0.021 3.979 10 H 0.108 0.892 11 C 0.051 3.949 12 N -0.329 5.329 13 C -0.360 4.360 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.565 5.565 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.017 3.983 22 C -0.091 4.091 23 C -0.189 4.189 24 C -0.183 4.183 25 C 0.121 3.879 26 C -0.140 4.140 27 C -0.201 4.201 28 C -0.187 4.187 29 N -0.237 5.237 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.188 0.812 34 H 0.228 0.772 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.173 0.827 47 H 0.123 0.877 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.783 -3.039 12.717 18.998 hybrid contribution 1.085 0.950 -1.015 1.764 sum -12.698 -2.089 11.702 17.394 Atomic orbital electron populations 1.20609 0.85426 1.04425 1.03962 1.23453 0.98344 0.83329 0.88185 1.68262 1.09654 1.30097 1.16094 1.23451 0.89613 0.97696 0.87192 1.21639 0.96656 0.95859 1.10254 1.17590 0.85430 0.84494 0.77213 1.90708 1.69084 1.30683 1.49393 1.45936 1.08043 1.07768 1.73574 1.22538 0.77547 0.97434 1.00387 0.89201 1.21525 0.99034 0.86372 0.88014 1.44426 1.74644 1.01756 1.12044 1.18972 1.34949 0.92552 0.89548 0.90530 1.24798 1.01511 0.95467 0.98429 1.69943 1.53163 1.00302 1.33086 0.86231 0.78931 0.77278 0.83474 1.21176 1.21624 1.21261 1.21634 0.97110 0.93149 0.86409 1.22021 0.95983 0.95756 0.95337 1.21688 0.98707 1.00819 0.97732 1.21597 0.94786 1.00826 1.01117 1.20978 0.88252 0.93896 0.84754 1.21446 1.01628 0.86087 1.04795 1.23001 0.99229 0.96963 1.00911 1.22859 1.02684 1.02001 0.91201 1.68086 1.09133 1.30071 1.16377 0.89420 0.89359 0.89431 0.81211 0.77181 0.92691 0.93361 0.93635 0.94007 0.96786 0.92757 0.92456 0.93270 0.91122 0.92822 0.93298 0.82666 0.87699 0.88367 0.87903 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.31 36.01 0.37 -0.34 16 2 C 0.33 4.16 7.64 -157.06 -1.20 2.96 16 3 N -0.53 -6.92 10.32 -10.39 -0.11 -7.03 16 4 C 0.19 2.45 10.81 -16.77 -0.18 2.27 16 5 C -0.24 -3.53 5.91 -104.69 -0.62 -4.14 16 6 C 0.57 9.59 7.76 -12.33 -0.10 9.49 16 7 O -0.52 -10.16 13.22 5.33 0.07 -10.09 16 8 N -0.70 -11.18 4.52 -52.98 -0.24 -11.42 16 9 C 0.13 2.27 2.51 -66.10 -0.17 2.11 16 10 H 0.09 1.68 7.60 -51.93 -0.39 1.28 16 11 C 0.18 4.19 4.79 -3.07 -0.01 4.17 16 12 N -0.60 -14.64 3.38 -170.08 -0.57 -15.21 16 13 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 14 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 15 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 16 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 17 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.14 2.73 6.14 -2.53 -0.02 2.72 16 22 C -0.09 -1.41 0.83 -152.36 -0.13 -1.54 16 23 C -0.13 -1.60 8.22 37.16 0.31 -1.29 16 24 C -0.13 -1.91 8.57 37.16 0.32 -1.60 16 25 C 0.27 3.96 6.53 -81.82 -0.53 3.42 16 26 C -0.12 -1.71 4.85 -91.77 -0.45 -2.15 16 27 C -0.16 -1.87 10.04 -26.73 -0.27 -2.14 16 28 C -0.15 -1.74 10.23 -26.73 -0.27 -2.02 16 29 N -0.52 -7.14 9.34 -6.67 -0.06 -7.20 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.17 1.78 6.56 -52.49 -0.34 1.43 16 34 H 0.39 5.34 5.05 -40.82 -0.21 5.13 16 35 H 0.06 1.49 7.38 -51.93 -0.38 1.10 16 36 H 0.05 1.33 7.41 -51.93 -0.38 0.95 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 39 H 0.01 0.27 7.98 -51.93 -0.41 -0.15 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.54 6.38 -51.93 -0.33 0.21 16 43 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.16 2.54 5.98 -51.93 -0.31 2.23 16 47 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 48 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -32.16 398.31 -10.32 -42.48 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.76 Total: 6.63 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -3.19 Total: 5.22 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.41 Total: -67.30 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.16 -10.32 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977539168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.368 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds