Wall clock time and date at job start Wed Apr 1 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31882 * 118.95211 * 2 1 4 4 C 1.32135 * 120.96594 * 179.71715 * 3 2 1 5 5 C 1.39974 * 118.92018 * 0.54224 * 4 3 2 6 6 C 1.47832 * 120.93815 * 179.71260 * 5 4 3 7 7 O 1.21546 * 120.00094 * 183.83072 * 6 5 4 8 8 N 1.34780 * 120.00073 * 3.83396 * 6 5 4 9 9 C 1.46494 * 120.00168 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.64312 * 323.31141 * 9 8 6 11 11 C 1.54319 * 110.72108 * 86.45121 * 9 8 6 12 12 N 1.47021 * 107.27122 * 96.17116 * 11 9 8 13 13 C 1.36944 * 125.64856 * 178.90525 * 12 11 9 14 14 H 1.07997 * 119.99623 * 180.02562 * 13 12 11 15 15 C 1.38810 * 120.00105 * 0.02625 * 13 12 11 16 16 N 1.31621 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99878 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47327 * 59.99811 * 17 15 13 19 19 H 1.48510 * 109.46833 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47131 * 299.99730 * 17 15 13 21 21 C 1.47422 * 108.70379 * 358.94073 * 12 11 9 22 22 C 1.54909 * 104.83266 * 24.12969 * 21 12 11 23 23 C 1.52997 * 111.00679 * 204.91752 * 22 21 12 24 24 C 1.53003 * 111.00606 * 81.06437 * 22 21 12 25 25 C 1.39920 * 118.12255 * 359.73012 * 5 4 3 26 26 C 1.50708 * 120.53962 * 179.97438 * 25 5 4 27 27 C 1.53001 * 117.49867 * 178.41369 * 26 25 5 28 28 C 1.52993 * 117.49783 * 109.79031 * 26 25 5 29 29 N 1.31856 * 118.95019 * 180.26609 * 2 1 3 30 30 H 1.08994 * 109.47298 * 269.73526 * 1 2 3 31 31 H 1.08996 * 109.46794 * 29.73833 * 1 2 3 32 32 H 1.09004 * 109.46620 * 149.73148 * 1 2 3 33 33 H 1.07995 * 120.53905 * 180.29541 * 4 3 2 34 34 H 0.97002 * 119.99438 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.88385 * 215.58898 * 11 9 8 36 36 H 1.09002 * 109.88594 * 336.75794 * 11 9 8 37 37 H 0.96994 * 119.99854 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.36859 * 142.96255 * 21 12 11 39 39 H 1.08995 * 110.37090 * 265.29065 * 21 12 11 40 40 H 1.08997 * 109.47184 * 172.19231 * 23 22 21 41 41 H 1.09003 * 109.47273 * 292.19350 * 23 22 21 42 42 H 1.09001 * 109.46932 * 52.19420 * 23 22 21 43 43 H 1.09005 * 109.47054 * 307.80392 * 24 22 21 44 44 H 1.08999 * 109.46929 * 67.80325 * 24 22 21 45 45 H 1.09001 * 109.47031 * 187.80695 * 24 22 21 46 46 H 1.08994 * 115.54691 * 324.11936 * 26 25 5 47 47 H 1.08998 * 117.50194 * 0.02562 * 27 26 25 48 48 H 1.09001 * 117.49674 * 145.02087 * 27 26 25 49 49 H 1.09006 * 117.49998 * 214.98284 * 28 26 25 50 50 H 1.09004 * 117.50309 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 0.0056 5 6 4.1855 -0.0002 0.0000 6 6 5.6639 -0.0002 -0.0005 7 8 6.2715 -1.0502 -0.0757 8 7 6.3378 1.1640 0.0826 9 6 7.8028 1.1640 0.0815 10 1 8.1875 0.3045 0.6306 11 6 8.3478 1.1780 -1.3621 12 7 8.6431 2.5771 -1.7037 13 6 9.1652 3.0157 -2.8913 14 1 9.3470 4.0691 -3.0450 15 6 9.4609 2.1063 -3.8975 16 7 9.2398 0.8224 -3.7099 17 14 10.1737 2.7045 -5.5171 18 1 11.4650 3.3933 -5.2654 19 1 10.3990 1.5448 -6.4171 20 1 9.2244 3.6507 -6.1564 21 6 8.2850 3.4297 -0.5556 22 6 8.3522 2.4889 0.6733 23 6 7.4555 2.9981 1.8035 24 6 9.7943 2.3181 1.1550 25 6 3.4661 -1.2002 -0.0056 26 6 4.1857 -2.5244 -0.0123 27 6 3.3310 -3.7930 0.0194 28 6 4.1198 -3.3707 1.2605 29 7 2.1453 -1.1538 -0.0054 30 1 -0.3633 -0.0047 1.0276 31 1 -0.3633 0.8923 -0.5098 32 1 -0.3633 -0.8876 -0.5180 33 1 3.9817 2.1493 0.0103 34 1 5.8528 2.0019 0.1430 35 1 9.2586 0.5820 -1.4204 36 1 7.5976 0.7801 -2.0455 37 1 9.4468 0.1869 -4.4128 38 1 9.0018 4.2440 -0.4495 39 1 7.2762 3.8246 -0.6763 40 1 7.4124 2.2523 2.5972 41 1 7.8636 3.9278 2.2003 42 1 6.4517 3.1772 1.4183 43 1 10.4248 2.0218 0.3165 44 1 10.1546 3.2616 1.5649 45 1 9.8309 1.5490 1.9266 46 1 5.1099 -2.5542 -0.5892 47 1 2.2482 -3.6700 0.0448 48 1 3.6929 -4.6578 -0.5368 49 1 5.0006 -3.9576 1.5209 50 1 3.5556 -2.9700 2.1028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977539168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:30 Heat of formation + Delta-G solvation = 48.283446 kcal Electronic energy + Delta-G solvation = -31201.737686 eV Core-core repulsion = 27230.014774 eV Total energy + Delta-G solvation = -3971.722912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55577 -41.06808 -39.41769 -38.23207 -35.74918 -34.99676 -34.32089 -33.94815 -32.60526 -30.42891 -29.36203 -28.04313 -27.40905 -26.51179 -25.39344 -24.57361 -23.27857 -22.48124 -22.10249 -21.57237 -20.30712 -18.97996 -18.70678 -18.60257 -17.48114 -17.09579 -16.77016 -16.59197 -16.13232 -15.88973 -15.73998 -15.47360 -15.32076 -14.98588 -14.76328 -14.42452 -14.02595 -13.79116 -13.52834 -13.44589 -13.34675 -13.14884 -13.04115 -12.95513 -12.85602 -12.75916 -12.65065 -12.58058 -12.48997 -12.35023 -12.18675 -11.85762 -11.76108 -11.57447 -11.51905 -11.30930 -11.23352 -10.77617 -10.63265 -10.49061 -10.43621 -10.00062 -8.88206 -7.83270 -5.19465 -0.70471 -0.17327 1.43575 1.46576 1.52986 1.73082 2.01238 2.49003 2.51234 2.69469 2.84981 2.95789 3.21752 3.34979 3.47848 3.55667 3.71274 3.75744 3.95141 3.96436 4.00146 4.06871 4.08861 4.19255 4.39411 4.52603 4.54374 4.69783 4.70234 4.71609 4.83468 4.85294 4.86219 4.88570 4.95563 4.98197 5.03825 5.12047 5.16365 5.18141 5.25605 5.30719 5.33242 5.36610 5.46404 5.56845 5.70989 5.75102 5.76130 6.18324 6.45263 6.86935 7.08388 7.15205 7.78907 8.42592 9.25477 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.003313 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.735989 B = 8450.569213 C = 8900.397380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.329 3.671 3 N -0.533 5.533 4 C 0.197 3.803 5 C -0.259 4.259 6 C 0.567 3.433 7 O -0.555 6.555 8 N -0.692 5.692 9 C 0.141 3.859 10 H 0.083 0.917 11 C 0.194 3.806 12 N -0.620 5.620 13 C -0.238 4.238 14 H 0.086 0.914 15 C -0.067 4.067 16 N -0.952 5.952 17 Si 0.975 3.025 18 H -0.275 1.275 19 H -0.300 1.300 20 H -0.277 1.277 21 C 0.137 3.863 22 C -0.074 4.074 23 C -0.125 4.125 24 C -0.124 4.124 25 C 0.261 3.739 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.137 4.137 29 N -0.528 5.528 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.195 0.805 34 H 0.406 0.594 35 H 0.007 0.993 36 H -0.001 1.001 37 H 0.242 0.758 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.109 0.891 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 -0.260 15.001 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 N -0.248 5.248 4 C 0.029 3.971 5 C -0.266 4.266 6 C 0.353 3.647 7 O -0.435 6.435 8 N -0.344 5.344 9 C 0.035 3.965 10 H 0.101 0.899 11 C 0.068 3.932 12 N -0.346 5.346 13 C -0.367 4.367 14 H 0.104 0.896 15 C -0.260 4.260 16 N -0.601 5.601 17 Si 0.803 3.197 18 H -0.200 1.200 19 H -0.227 1.227 20 H -0.203 1.203 21 C 0.012 3.988 22 C -0.075 4.075 23 C -0.183 4.183 24 C -0.181 4.181 25 C 0.115 3.885 26 C -0.168 4.168 27 C -0.183 4.183 28 C -0.175 4.175 29 N -0.243 5.243 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.212 0.788 34 H 0.245 0.755 35 H 0.025 0.975 36 H 0.017 0.983 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.143 0.857 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.127 0.873 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.847 -1.041 14.746 21.671 hybrid contribution 1.670 0.358 -1.636 2.365 sum -14.177 -0.684 13.110 19.322 Atomic orbital electron populations 1.20794 0.82353 1.05486 1.05534 1.24356 1.00159 0.82848 0.86223 1.68404 1.09391 1.30302 1.16684 1.23817 0.89798 0.97873 0.85592 1.21477 0.95192 0.97012 1.12961 1.17953 0.86442 0.84082 0.76200 1.90703 1.70066 1.31925 1.50783 1.45720 1.06981 1.08350 1.73357 1.22129 0.78848 0.99028 0.96496 0.89901 1.21080 0.95726 0.85699 0.90719 1.44669 1.74354 1.02731 1.12869 1.19432 1.33667 0.92974 0.90590 0.89581 1.25633 1.02846 0.95611 1.01942 1.70218 1.54969 1.01427 1.33478 0.85205 0.78616 0.76443 0.79402 1.20049 1.22675 1.20307 1.21913 0.97806 0.93273 0.85798 1.21989 0.97194 0.92892 0.95449 1.21673 0.98420 1.02014 0.96198 1.21592 0.93689 1.02697 1.00140 1.21122 0.88951 0.94039 0.84434 1.21301 1.01487 0.87332 1.06640 1.23061 0.99159 0.95682 1.00378 1.22917 1.02955 1.00838 0.90819 1.68183 1.08346 1.30673 1.17120 0.87343 0.88196 0.88430 0.78809 0.75548 0.97469 0.98264 0.94833 0.93316 0.95067 0.91539 0.90184 0.91877 0.95113 0.90312 0.91472 0.85695 0.87171 0.87163 0.87266 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.31 71.24 0.73 -0.40 16 2 C 0.33 7.60 7.64 138.71 1.06 8.66 16 3 N -0.53 -12.95 10.32 -186.79 -1.93 -14.87 16 4 C 0.20 4.84 10.81 85.07 0.92 5.76 16 5 C -0.26 -7.72 5.91 -19.91 -0.12 -7.84 16 6 C 0.57 19.71 7.76 86.78 0.67 20.38 16 7 O -0.56 -23.04 13.22 -3.86 -0.05 -23.09 16 8 N -0.69 -21.97 4.52 -439.81 -1.99 -23.96 16 9 C 0.14 5.19 2.51 46.18 0.12 5.31 16 10 H 0.08 3.21 7.60 -2.39 -0.02 3.19 16 11 C 0.19 9.81 4.79 86.73 0.42 10.23 16 12 N -0.62 -30.89 3.38 -692.01 -2.34 -33.23 16 13 C -0.24 -13.18 10.28 84.03 0.86 -12.32 16 14 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 15 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 16 N -0.95 -59.46 10.31 21.65 0.22 -59.24 16 17 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 C 0.14 5.03 6.14 86.86 0.53 5.56 16 22 C -0.07 -2.21 0.83 -50.79 -0.04 -2.25 16 23 C -0.13 -2.54 8.22 71.98 0.59 -1.94 16 24 C -0.12 -3.60 8.57 71.98 0.62 -2.99 16 25 C 0.26 7.74 6.53 42.92 0.28 8.02 16 26 C -0.15 -4.33 4.85 -11.54 -0.06 -4.38 16 27 C -0.15 -3.24 10.04 30.59 0.31 -2.94 16 28 C -0.14 -3.16 10.23 30.59 0.31 -2.84 16 29 N -0.53 -13.87 9.34 -175.02 -1.63 -15.51 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.20 3.58 6.56 -2.91 -0.02 3.57 16 34 H 0.41 10.37 5.05 -92.71 -0.47 9.90 16 35 H 0.01 0.42 7.38 -2.38 -0.02 0.41 16 36 H 0.00 -0.05 7.41 -2.39 -0.02 -0.07 16 37 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 39 H 0.03 1.07 7.98 -2.39 -0.02 1.05 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.12 6.38 -2.39 -0.02 1.10 16 43 H 0.03 1.13 7.91 -2.38 -0.02 1.11 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.13 4.44 5.98 -2.39 -0.01 4.42 16 47 H 0.11 2.34 7.58 -2.39 -0.02 2.33 16 48 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 50 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -75.60 398.31 2.47 -73.13 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.49 Total: 25.54 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 7.67 Total: 22.58 kcal Atomic # 7 Polarization: -139.14 SS G_CDS: -7.67 Total: -146.80 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.60 2.47 -73.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977539168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.412 kcal (2) G-P(sol) polarization free energy of solvation -75.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds