Wall clock time and date at job start Wed Apr 1 2020 03:05:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.31880 * 118.95892 * 2 1
4 4 C 1.32133 * 120.97055 * 179.71399 * 3 2 1
5 5 C 1.39967 * 118.91904 * 0.54874 * 4 3 2
6 6 C 1.47836 * 120.93767 * 179.70740 * 5 4 3
7 7 O 1.21554 * 120.00103 * 174.13190 * 6 5 4
8 8 N 1.34777 * 120.00135 * 354.13743 * 6 5 4
9 9 C 1.46491 * 120.00076 * 179.97438 * 8 6 5
10 10 H 1.09008 * 110.64217 * 34.29885 * 9 8 6
11 11 C 1.54319 * 110.72139 * 271.15540 * 9 8 6
12 12 N 1.47489 * 107.03502 * 263.78645 * 11 9 8
13 13 C 1.36935 * 125.59662 * 181.00541 * 12 11 9
14 14 H 1.07996 * 120.00274 * 180.02562 * 13 12 11
15 15 C 1.38823 * 119.99575 * 0.02562 * 13 12 11
16 16 N 1.31614 * 119.99717 * 0.02562 * 15 13 12
17 17 Si 1.86796 * 119.99613 * 180.02562 * 15 13 12
18 18 H 1.48502 * 109.47393 * 60.00816 * 17 15 13
19 19 H 1.48508 * 109.46992 * 180.02562 * 17 15 13
20 20 H 1.48497 * 109.47352 * 299.99977 * 17 15 13
21 21 C 1.47424 * 108.75782 * 1.02654 * 12 11 9
22 22 C 1.54906 * 104.83412 * 335.89074 * 21 12 11
23 23 C 1.53005 * 111.00478 * 278.93519 * 22 21 12
24 24 C 1.52996 * 111.00695 * 155.08361 * 22 21 12
25 25 C 1.39931 * 118.12652 * 359.72895 * 5 4 3
26 26 C 1.50695 * 120.53954 * 180.02562 * 25 5 4
27 27 C 1.53002 * 117.49412 * 178.43081 * 26 25 5
28 28 C 1.52994 * 59.99991 * 252.50965 * 27 26 25
29 29 N 1.31861 * 118.94901 * 180.27097 * 2 1 3
30 30 H 1.09004 * 109.47054 * 269.73472 * 1 2 3
31 31 H 1.09006 * 109.46412 * 29.72806 * 1 2 3
32 32 H 1.08998 * 109.47040 * 149.72964 * 1 2 3
33 33 H 1.07991 * 120.54065 * 180.27402 * 4 3 2
34 34 H 0.97003 * 119.99419 * 359.97438 * 8 6 5
35 35 H 1.08996 * 109.88434 * 23.24887 * 11 9 8
36 36 H 1.08999 * 109.88552 * 144.41523 * 11 9 8
37 37 H 0.97006 * 119.99378 * 179.97438 * 16 15 13
38 38 H 1.08998 * 110.36694 * 217.05114 * 21 12 11
39 39 H 1.09005 * 110.46013 * 94.77325 * 21 12 11
40 40 H 1.08993 * 109.46967 * 172.19076 * 23 22 21
41 41 H 1.08995 * 109.46844 * 292.19670 * 23 22 21
42 42 H 1.09001 * 109.46573 * 52.19506 * 23 22 21
43 43 H 1.09002 * 109.47394 * 307.80407 * 24 22 21
44 44 H 1.09004 * 109.47171 * 67.80009 * 24 22 21
45 45 H 1.08996 * 109.47351 * 187.80553 * 24 22 21
46 46 H 1.08993 * 115.55239 * 324.13806 * 26 25 5
47 47 H 1.08991 * 117.50407 * 0.02562 * 27 26 25
48 48 H 1.09007 * 117.49651 * 145.02049 * 27 26 25
49 49 H 1.09004 * 117.49994 * 252.51328 * 28 27 26
50 50 H 1.09001 * 117.49786 * 107.49293 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1456 1.1539 0.0000
4 6 3.4661 1.2003 0.0057
5 6 4.1855 -0.0003 0.0000
6 6 5.6639 -0.0004 -0.0006
7 8 6.2716 -1.0481 0.1021
8 7 6.3379 1.1611 -0.1147
9 6 7.8028 1.1610 -0.1147
10 1 8.1870 0.2661 -0.6043
11 6 8.3488 1.2733 1.3243
12 7 8.6445 2.6981 1.5644
13 6 9.1660 3.2206 2.7177
14 1 9.3469 4.2824 2.7960
15 6 9.4622 2.3854 3.7862
16 7 9.2421 1.0913 3.6905
17 14 10.1729 3.0982 5.3597
18 1 9.2217 4.0860 5.9296
19 1 10.3992 2.0058 6.3400
20 1 11.4634 3.7692 5.0605
21 6 8.2856 3.4665 0.3585
22 6 8.3519 2.4402 -0.8000
23 6 9.7937 2.2352 -1.2692
24 6 7.4545 2.8674 -1.9632
25 6 3.4661 -1.2005 -0.0057
26 6 4.1856 -2.5245 -0.0114
27 6 3.3307 -3.7931 0.0198
28 6 4.1182 -3.3706 1.2616
29 7 2.1453 -1.1538 -0.0055
30 1 -0.3633 -0.0048 1.0277
31 1 -0.3632 0.8925 -0.5097
32 1 -0.3633 -0.8875 -0.5180
33 1 3.9818 2.1491 0.0101
34 1 5.8528 1.9971 -0.1970
35 1 7.5991 0.9228 2.0336
36 1 9.2596 0.6826 1.4224
37 1 9.4494 0.5076 4.4371
38 1 9.0023 4.2710 0.1940
39 1 7.2773 3.8704 0.4501
40 1 9.8297 1.4130 -1.9838
41 1 10.1537 3.1470 -1.7458
42 1 10.4246 1.9996 -0.4122
43 1 6.4509 3.0737 -1.5911
44 1 7.8623 3.7663 -2.4256
45 1 7.4108 2.0668 -2.7015
46 1 5.1105 -2.5545 -0.5873
47 1 2.2481 -3.6700 0.0440
48 1 3.6932 -4.6580 -0.5359
49 1 4.9988 -3.9575 1.5230
50 1 3.5535 -2.9695 2.1033
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000977539174.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:05:34
Heat of formation + Delta-G solvation = 47.859526 kcal
Electronic energy + Delta-G solvation = -31208.050514 eV
Core-core repulsion = 27236.309219 eV
Total energy + Delta-G solvation = -3971.741295 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.55666 -41.05599 -39.40577 -38.23869 -35.72826 -34.99677 -34.32345 -33.95129
-32.58902 -30.43078 -29.36236 -28.04230 -27.40555 -26.52376 -25.38386 -24.56821
-23.27863 -22.47358 -22.09427 -21.59151 -20.30284 -18.98094 -18.71540 -18.59635
-17.49299 -17.08095 -16.83201 -16.52233 -16.11382 -15.87856 -15.73868 -15.49462
-15.32484 -14.96833 -14.77379 -14.42430 -14.02163 -13.79289 -13.53818 -13.44471
-13.34313 -13.14271 -13.03930 -12.92887 -12.85755 -12.78144 -12.64667 -12.58251
-12.49559 -12.36433 -12.18121 -11.85482 -11.75687 -11.58780 -11.50615 -11.30807
-11.24580 -10.79785 -10.66841 -10.49049 -10.42412 -9.98990 -8.88051 -7.82960
-5.18877 -0.70586 -0.17815 1.43934 1.46811 1.53183 1.72461 2.01346
2.49309 2.50487 2.70615 2.84941 2.91373 3.24864 3.35430 3.47798
3.55691 3.70867 3.75145 3.95498 3.96673 3.99776 4.05899 4.08689
4.16991 4.39589 4.52527 4.53182 4.69612 4.69847 4.72320 4.83458
4.84877 4.86019 4.88706 4.95760 4.97828 5.03873 5.11392 5.14262
5.17653 5.25598 5.30208 5.31714 5.36201 5.46796 5.56756 5.70578
5.75088 5.75703 6.18007 6.45124 6.86703 7.08054 7.14261 7.78637
8.42879 9.25908
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010910 B = 0.003367 C = 0.003141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2565.792958 B = 8314.383876 C = 8912.753680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C 0.329 3.671
3 N -0.533 5.533
4 C 0.196 3.804
5 C -0.258 4.258
6 C 0.566 3.434
7 O -0.555 6.555
8 N -0.692 5.692
9 C 0.140 3.860
10 H 0.084 0.916
11 C 0.194 3.806
12 N -0.620 5.620
13 C -0.237 4.237
14 H 0.086 0.914
15 C -0.067 4.067
16 N -0.952 5.952
17 Si 0.974 3.026
18 H -0.277 1.277
19 H -0.300 1.300
20 H -0.275 1.275
21 C 0.137 3.863
22 C -0.074 4.074
23 C -0.124 4.124
24 C -0.125 4.125
25 C 0.260 3.740
26 C -0.136 4.136
27 C -0.136 4.136
28 C -0.154 4.154
29 N -0.528 5.528
30 H 0.102 0.898
31 H 0.102 0.898
32 H 0.101 0.899
33 H 0.194 0.806
34 H 0.406 0.594
35 H 0.001 0.999
36 H 0.008 0.992
37 H 0.243 0.757
38 H 0.048 0.952
39 H 0.032 0.968
40 H 0.066 0.934
41 H 0.078 0.922
42 H 0.030 0.970
43 H 0.062 0.938
44 H 0.079 0.921
45 H 0.064 0.936
46 H 0.131 0.869
47 H 0.110 0.890
48 H 0.117 0.883
49 H 0.104 0.896
50 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.370 -1.365 -14.136 20.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.064 3.936
3 N -0.248 5.248
4 C 0.029 3.971
5 C -0.266 4.266
6 C 0.353 3.647
7 O -0.434 6.434
8 N -0.344 5.344
9 C 0.034 3.966
10 H 0.102 0.898
11 C 0.068 3.932
12 N -0.347 5.347
13 C -0.366 4.366
14 H 0.104 0.896
15 C -0.260 4.260
16 N -0.601 5.601
17 Si 0.803 3.197
18 H -0.203 1.203
19 H -0.227 1.227
20 H -0.201 1.201
21 C 0.013 3.987
22 C -0.076 4.076
23 C -0.181 4.181
24 C -0.183 4.183
25 C 0.113 3.887
26 C -0.155 4.155
27 C -0.173 4.173
28 C -0.192 4.192
29 N -0.242 5.242
30 H 0.120 0.880
31 H 0.121 0.879
32 H 0.119 0.881
33 H 0.211 0.789
34 H 0.244 0.756
35 H 0.019 0.981
36 H 0.026 0.974
37 H 0.052 0.948
38 H 0.066 0.934
39 H 0.049 0.951
40 H 0.085 0.915
41 H 0.097 0.903
42 H 0.049 0.951
43 H 0.081 0.919
44 H 0.098 0.902
45 H 0.083 0.917
46 H 0.148 0.852
47 H 0.128 0.872
48 H 0.136 0.864
49 H 0.122 0.878
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -15.884 -2.131 -13.884 21.204
hybrid contribution 1.687 0.502 1.616 2.390
sum -14.197 -1.630 -12.268 18.834
Atomic orbital electron populations
1.20797 0.82352 1.05737 1.05292 1.24354 1.00158 0.82840 0.86231
1.68401 1.09394 1.30337 1.16648 1.23809 0.89805 0.97895 0.85614
1.21481 0.95204 0.96988 1.12881 1.17949 0.86418 0.84067 0.76289
1.90728 1.70077 1.32021 1.50597 1.45704 1.06991 1.08635 1.73051
1.22136 0.78849 0.99186 0.96406 0.89833 1.21161 0.95754 0.85223
0.91070 1.44775 1.74372 1.03211 1.12315 1.19430 1.33660 0.92865
0.90676 0.89616 1.25621 1.02865 0.95905 1.01609 1.70212 1.54980
1.03433 1.31447 0.85213 0.78603 0.76646 0.79249 1.20319 1.22673
1.20100 1.21898 0.97807 0.93815 0.85215 1.21990 0.97154 0.93111
0.95302 1.21590 0.93723 1.02604 1.00197 1.21664 0.98440 1.02281
0.95866 1.21131 0.88973 0.94047 0.84515 1.21189 1.01295 0.87217
1.05813 1.23077 0.99081 0.95758 0.99393 1.22880 1.03175 1.01830
0.91296 1.68178 1.08348 1.30650 1.17065 0.88002 0.87888 0.88076
0.78904 0.75577 0.98107 0.97377 0.94826 0.93368 0.95057 0.91519
0.90349 0.95075 0.91898 0.90245 0.91651 0.85177 0.87166 0.86431
0.87770 0.89810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.13 10.31 71.24 0.73 -0.40 16
2 C 0.33 7.56 7.64 138.70 1.06 8.62 16
3 N -0.53 -12.95 10.31 -186.79 -1.93 -14.88 16
4 C 0.20 4.84 10.80 85.07 0.92 5.76 16
5 C -0.26 -7.63 5.91 -19.91 -0.12 -7.75 16
6 C 0.57 19.50 7.75 86.78 0.67 20.17 16
7 O -0.55 -22.70 13.28 -3.89 -0.05 -22.75 16
8 N -0.69 -21.90 4.47 -439.80 -1.96 -23.86 16
9 C 0.14 5.16 2.54 46.18 0.12 5.27 16
10 H 0.08 3.23 7.53 -2.38 -0.02 3.21 16
11 C 0.19 9.77 4.82 86.64 0.42 10.18 16
12 N -0.62 -30.78 3.39 -690.81 -2.34 -33.12 16
13 C -0.24 -13.12 10.28 84.04 0.86 -12.25 16
14 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16
15 C -0.07 -3.87 5.49 84.87 0.47 -3.40 16
16 N -0.95 -59.17 10.31 21.65 0.22 -58.95 16
17 Si 0.97 46.47 29.55 68.60 2.03 48.49 16
18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
19 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16
20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
21 C 0.14 5.04 6.14 86.85 0.53 5.57 16
22 C -0.07 -2.22 0.83 -50.79 -0.04 -2.26 16
23 C -0.12 -3.61 8.57 71.98 0.62 -3.00 16
24 C -0.12 -2.56 8.22 71.98 0.59 -1.97 16
25 C 0.26 7.60 6.53 42.92 0.28 7.88 16
26 C -0.14 -3.88 4.70 -11.54 -0.05 -3.93 16
27 C -0.14 -2.95 10.04 30.59 0.31 -2.64 16
28 C -0.15 -4.06 10.23 30.59 0.31 -3.74 16
29 N -0.53 -13.71 9.34 -175.03 -1.63 -15.34 16
30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16
31 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16
32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
33 H 0.19 3.64 6.58 -2.91 -0.02 3.62 16
34 H 0.41 10.43 5.18 -92.71 -0.48 9.95 16
35 H 0.00 0.04 7.41 -2.39 -0.02 0.03 16
36 H 0.01 0.47 7.39 -2.39 -0.02 0.46 16
37 H 0.24 14.93 8.31 -92.70 -0.77 14.16 16
38 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16
39 H 0.03 1.07 7.98 -2.38 -0.02 1.05 16
40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
42 H 0.03 1.14 7.91 -2.39 -0.02 1.12 16
43 H 0.06 1.13 6.43 -2.39 -0.02 1.12 16
44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.13 4.14 6.24 -2.39 -0.01 4.12 16
47 H 0.11 2.29 7.58 -2.39 -0.02 2.27 16
48 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16
49 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16
50 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
Total: -1.00 -74.84 398.61 2.48 -72.36
By element:
Atomic # 1 Polarization: 25.46 SS G_CDS: 0.47 Total: 25.94 kcal
Atomic # 6 Polarization: 14.44 SS G_CDS: 7.68 Total: 22.12 kcal
Atomic # 7 Polarization: -138.51 SS G_CDS: -7.64 Total: -146.16 kcal
Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal
Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal
Total: -74.84 2.48 -72.36 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977539174.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.219 kcal
(2) G-P(sol) polarization free energy of solvation -74.842 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds