Wall clock time and date at job start Wed Apr 1 2020 03:25:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30748 * 125.61448 * 2 1
4 4 C 1.33572 * 109.15200 * 180.02562 * 3 2 1
5 5 C 1.35032 * 107.97480 * 359.94601 * 4 3 2
6 6 N 1.35306 * 125.61836 * 180.02562 * 2 1 3
7 7 H 0.96998 * 126.49862 * 0.04166 * 6 2 1
8 8 C 1.50654 * 124.45380 * 180.18351 * 5 4 3
9 9 C 1.53392 * 108.38517 * 16.40153 * 8 5 4
10 10 H 1.08997 * 109.48504 * 70.34878 * 9 8 5
11 11 C 1.50698 * 109.47734 * 190.36479 * 9 8 5
12 12 O 1.21287 * 120.00018 * 119.97148 * 11 9 8
13 13 N 1.34770 * 120.00153 * 299.97394 * 11 9 8
14 14 C 1.46500 * 120.00514 * 180.27564 * 13 11 9
15 15 C 1.52994 * 109.47521 * 179.72564 * 14 13 11
16 16 H 1.08997 * 115.51745 * 29.58018 * 15 14 13
17 17 C 1.52998 * 117.44014 * 244.23899 * 15 14 13
18 18 H 1.08998 * 119.54028 * 4.11659 * 17 15 14
19 19 C 1.57692 * 116.11182 * 161.63868 * 17 15 14
20 20 N 1.48142 * 104.67813 * 87.30729 * 19 17 15
21 21 C 1.36934 * 127.84042 * 139.77684 * 20 19 17
22 22 H 1.08006 * 120.00091 * 195.54937 * 21 20 19
23 23 C 1.38805 * 120.00212 * 15.54823 * 21 20 19
24 24 N 1.31624 * 120.00000 * 9.01363 * 23 21 20
25 25 Si 1.86805 * 120.00255 * 189.00986 * 23 21 20
26 26 H 1.48500 * 109.47096 * 94.44926 * 25 23 21
27 27 H 1.48497 * 109.46899 * 214.44628 * 25 23 21
28 28 H 1.48500 * 109.47028 * 334.44785 * 25 23 21
29 29 C 1.48154 * 104.32125 * 319.77673 * 20 19 17
30 30 C 1.53005 * 117.44295 * 175.00211 * 15 14 13
31 31 H 1.08997 * 119.54031 * 355.87507 * 30 15 14
32 32 C 1.53124 * 109.44415 * 310.35666 * 9 8 5
33 33 C 1.50868 * 128.03969 * 179.97438 * 4 3 2
34 34 H 1.09006 * 109.47118 * 90.02446 * 1 2 3
35 35 H 1.08999 * 109.46455 * 210.01656 * 1 2 3
36 36 H 1.08997 * 109.47166 * 330.02257 * 1 2 3
37 37 H 1.09001 * 109.67942 * 256.67800 * 8 5 4
38 38 H 1.08999 * 109.68467 * 136.12785 * 8 5 4
39 39 H 0.97002 * 119.99999 * 359.97438 * 13 11 9
40 40 H 1.09007 * 109.46573 * 299.72372 * 14 13 11
41 41 H 1.09003 * 109.47357 * 59.71970 * 14 13 11
42 42 H 1.09005 * 110.92310 * 328.22685 * 19 17 15
43 43 H 1.09005 * 109.84063 * 205.83885 * 19 17 15
44 44 H 0.96999 * 120.00145 * 180.02562 * 24 23 21
45 45 H 1.08997 * 110.40436 * 280.79630 * 29 20 19
46 46 H 1.09003 * 110.50293 * 158.42197 * 29 20 19
47 47 H 1.08999 * 109.46086 * 190.03376 * 32 9 8
48 48 H 1.08995 * 109.46349 * 309.99746 * 32 9 8
49 49 H 1.09003 * 109.67033 * 76.92113 * 33 4 3
50 50 H 1.08999 * 109.70699 * 316.39980 * 33 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2684 1.0629 0.0000
4 6 3.5494 0.6844 -0.0006
5 6 3.5850 -0.6655 0.0003
6 7 2.2951 -1.0999 -0.0005
7 1 1.9972 -2.0230 -0.0015
8 6 4.8494 -1.4847 0.0040
9 6 6.0137 -0.5756 0.4175
10 1 5.9202 -0.3229 1.4736
11 6 7.3183 -1.2935 0.1862
12 8 8.1413 -0.8265 -0.5725
13 7 7.5706 -2.4545 0.8224
14 6 8.8414 -3.1494 0.6022
15 6 8.8760 -4.4277 1.4422
16 1 7.9076 -4.8894 1.6347
17 6 9.9308 -4.5171 2.5468
18 1 10.5720 -3.6591 2.7483
19 6 9.6754 -5.6000 3.6643
20 7 10.2819 -6.8414 3.1297
21 6 11.0066 -7.7829 3.8104
22 1 11.6002 -8.5039 3.2677
23 6 10.9785 -7.8109 5.1979
24 7 10.1243 -7.0546 5.8542
25 14 12.1529 -8.9221 6.1338
26 1 13.3641 -8.1525 6.5156
27 1 11.4834 -9.4307 7.3578
28 1 12.5445 -10.0662 5.2719
29 6 9.9265 -6.8330 1.6915
30 6 10.0773 -5.3579 1.2615
31 1 10.8275 -5.1262 0.5056
32 6 5.9812 0.7065 -0.4190
33 6 4.7777 1.5604 -0.0013
34 1 -0.3634 -0.0004 -1.0277
35 1 -0.3632 -0.8899 0.5141
36 1 -0.3633 0.8902 0.5135
37 1 5.0314 -1.8833 -0.9940
38 1 4.7534 -2.3048 0.7155
39 1 6.9126 -2.8279 1.4294
40 1 8.9374 -3.4054 -0.4530
41 1 9.6663 -2.4998 0.8950
42 1 8.6078 -5.7408 3.8332
43 1 10.1712 -5.3022 4.5883
44 1 10.1049 -7.0738 6.8238
45 1 8.8981 -7.1664 1.5523
46 1 10.6102 -7.4657 1.1256
47 1 6.9000 1.2698 -0.2560
48 1 5.8956 0.4494 -1.4747
49 1 4.9420 1.9628 0.9983
50 1 4.6451 2.3787 -0.7090
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000978362898.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:25:23
Heat of formation + Delta-G solvation = 40.025679 kcal
Electronic energy + Delta-G solvation = -29094.021655 eV
Core-core repulsion = 25121.940659 eV
Total energy + Delta-G solvation = -3972.080996 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-43.30355 -41.07458 -40.17203 -37.35069 -36.30205 -35.00927 -34.14654 -32.75765
-32.14540 -31.02008 -29.05879 -28.72059 -28.19723 -26.54738 -24.21097 -23.73218
-22.74057 -21.84255 -21.78799 -21.05571 -20.77316 -19.93151 -18.83666 -18.58742
-17.81775 -17.10660 -16.82954 -16.62646 -16.38384 -15.91977 -15.44519 -15.18935
-15.06366 -14.78598 -14.70459 -14.59376 -14.39368 -14.35972 -14.12866 -13.72105
-13.45862 -13.35013 -13.24504 -13.17367 -12.87801 -12.74989 -12.69056 -12.51966
-12.29896 -12.02790 -11.91012 -11.90586 -11.89124 -11.75135 -11.03911 -10.92430
-10.84672 -10.80150 -10.64656 -10.52467 -10.00993 -8.99237 -8.90422 -7.92329
-5.28275 1.02184 1.45970 1.47535 1.56541 1.59040 2.04054 2.08255
2.22333 2.47525 2.78664 3.25893 3.35592 3.60002 3.64599 3.72448
3.74173 3.79450 3.87690 4.11095 4.15565 4.20225 4.22572 4.29570
4.37197 4.42772 4.49481 4.53169 4.58799 4.63068 4.72114 4.75819
4.76457 4.79121 4.92768 4.95011 5.03294 5.07363 5.12284 5.19266
5.22606 5.30297 5.33204 5.36532 5.44486 5.49925 5.53728 5.67221
5.80496 6.18461 6.54779 6.56454 7.01551 7.14131 7.24474 7.68373
8.46569 9.21066
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.017611 B = 0.001813 C = 0.001716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1589.524590 B =15438.290874 C =16312.674178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 C 0.196 3.804
3 N -0.525 5.525
4 C -0.021 4.021
5 C -0.027 4.027
6 N -0.547 5.547
7 H 0.434 0.566
8 C -0.026 4.026
9 C -0.092 4.092
10 H 0.118 0.882
11 C 0.522 3.478
12 O -0.578 6.578
13 N -0.714 5.714
14 C 0.162 3.838
15 C -0.110 4.110
16 H 0.111 0.889
17 C -0.180 4.180
18 H 0.114 0.886
19 C 0.190 3.810
20 N -0.621 5.621
21 C -0.240 4.240
22 H 0.080 0.920
23 C -0.063 4.063
24 N -0.946 5.946
25 Si 0.978 3.022
26 H -0.288 1.288
27 H -0.294 1.294
28 H -0.267 1.267
29 C 0.149 3.851
30 C -0.161 4.161
31 H 0.123 0.877
32 C -0.091 4.091
33 C -0.029 4.029
34 H 0.091 0.909
35 H 0.098 0.902
36 H 0.088 0.912
37 H 0.085 0.915
38 H 0.104 0.896
39 H 0.414 0.586
40 H 0.076 0.924
41 H 0.061 0.939
42 H 0.009 0.991
43 H 0.048 0.952
44 H 0.250 0.750
45 H 0.028 0.972
46 H 0.055 0.945
47 H 0.077 0.923
48 H 0.062 0.938
49 H 0.082 0.918
50 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.242 13.379 -13.449 26.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.067 4.067
3 N -0.246 5.246
4 C -0.150 4.150
5 C -0.144 4.144
6 N -0.152 5.152
7 H 0.275 0.725
8 C -0.064 4.064
9 C -0.113 4.113
10 H 0.136 0.864
11 C 0.309 3.691
12 O -0.457 6.457
13 N -0.366 5.366
14 C 0.038 3.962
15 C -0.129 4.129
16 H 0.129 0.871
17 C -0.199 4.199
18 H 0.132 0.868
19 C 0.064 3.936
20 N -0.345 5.345
21 C -0.368 4.368
22 H 0.097 0.903
23 C -0.257 4.257
24 N -0.594 5.594
25 Si 0.806 3.194
26 H -0.215 1.215
27 H -0.220 1.220
28 H -0.191 1.191
29 C 0.024 3.976
30 C -0.181 4.181
31 H 0.141 0.859
32 C -0.129 4.129
33 C -0.068 4.068
34 H 0.109 0.891
35 H 0.116 0.884
36 H 0.107 0.893
37 H 0.103 0.897
38 H 0.123 0.877
39 H 0.251 0.749
40 H 0.094 0.906
41 H 0.079 0.921
42 H 0.027 0.973
43 H 0.067 0.933
44 H 0.059 0.941
45 H 0.046 0.954
46 H 0.074 0.926
47 H 0.096 0.904
48 H 0.081 0.919
49 H 0.100 0.900
50 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -17.855 14.385 -13.763 26.742
hybrid contribution 0.556 -1.944 1.113 2.308
sum -17.298 12.441 -12.649 24.779
Atomic orbital electron populations
1.20324 0.82218 1.05196 1.04587 1.24003 0.96886 0.81089 1.04717
1.69907 1.02561 1.30416 1.21753 1.20868 0.93068 0.92287 1.08764
1.20898 0.86481 0.95197 1.11831 1.42765 1.05409 1.10735 1.56268
0.72467 1.19985 0.86626 0.96129 1.03667 1.21273 0.90413 0.95864
1.03784 0.86396 1.20817 0.88750 0.80432 0.79133 1.90703 1.49729
1.67003 1.38299 1.45959 1.19911 1.23467 1.47229 1.20693 0.86054
0.90500 0.98953 1.22445 0.94893 0.96521 0.98992 0.87092 1.24767
1.03608 1.00046 0.91523 0.86834 1.21408 0.94255 0.83753 0.94190
1.45465 1.61704 1.22187 1.05154 1.19382 1.19397 1.08711 0.89340
0.90269 1.25718 1.00753 1.01697 0.97506 1.70080 1.38335 1.44377
1.06609 0.85065 0.77953 0.78436 0.77898 1.21468 1.22011 1.19120
1.21304 0.97556 0.93666 0.85089 1.23718 1.01126 0.92746 1.00535
0.85882 1.21337 0.97957 0.94312 0.99341 1.19935 0.88142 0.96086
1.02590 0.89062 0.88350 0.89331 0.89650 0.87729 0.74868 0.90612
0.92080 0.97338 0.93306 0.94136 0.95405 0.92625 0.90421 0.91936
0.90006 0.90395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.49 10.51 71.24 0.75 0.26 16
2 C 0.20 3.15 8.16 137.97 1.13 4.28 16
3 N -0.53 -12.02 11.25 -175.89 -1.98 -14.00 16
4 C -0.02 -0.42 6.98 41.61 0.29 -0.13 16
5 C -0.03 -0.44 7.08 41.14 0.29 -0.15 16
6 N -0.55 -6.91 6.14 -174.58 -1.07 -7.98 16
7 H 0.43 2.42 8.96 -92.71 -0.83 1.59 16
8 C -0.03 -0.31 5.43 29.97 0.16 -0.15 16
9 C -0.09 -1.39 2.50 -11.37 -0.03 -1.42 16
10 H 0.12 1.53 8.12 -2.39 -0.02 1.51 16
11 C 0.52 10.73 7.13 87.66 0.63 11.36 16
12 O -0.58 -16.72 15.81 -3.05 -0.05 -16.77 16
13 N -0.71 -13.02 5.46 -463.07 -2.53 -15.55 16
14 C 0.16 3.61 5.95 86.38 0.51 4.13 16
15 C -0.11 -2.86 5.34 -10.79 -0.06 -2.91 16
16 H 0.11 2.78 8.04 -2.39 -0.02 2.76 16
17 C -0.18 -6.26 7.03 -8.70 -0.06 -6.32 16
18 H 0.11 3.80 8.12 -2.39 -0.02 3.78 16
19 C 0.19 8.95 5.76 87.73 0.51 9.45 16
20 N -0.62 -31.33 3.38 -681.41 -2.30 -33.64 16
21 C -0.24 -13.27 10.35 84.03 0.87 -12.40 16
22 H 0.08 4.21 7.84 -2.91 -0.02 4.19 16
23 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16
24 N -0.95 -55.93 10.86 21.65 0.24 -55.70 16
25 Si 0.98 45.01 29.56 68.60 2.03 47.04 16
26 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16
27 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16
28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
29 C 0.15 5.87 7.04 86.53 0.61 6.48 16
30 C -0.16 -5.12 6.77 -9.89 -0.07 -5.19 16
31 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16
32 C -0.09 -1.58 4.64 30.76 0.14 -1.44 16
33 C -0.03 -0.52 6.30 30.02 0.19 -0.33 16
34 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16
35 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16
36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
37 H 0.09 1.07 8.11 -2.39 -0.02 1.05 16
38 H 0.10 0.81 7.90 -2.39 -0.02 0.79 16
39 H 0.41 5.60 8.08 -92.71 -0.75 4.85 16
40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16
41 H 0.06 1.52 7.94 -2.39 -0.02 1.50 16
42 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16
43 H 0.05 2.66 6.51 -2.38 -0.02 2.64 16
44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16
45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
46 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16
47 H 0.08 1.45 7.76 -2.39 -0.02 1.43 16
48 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16
49 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
50 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
Total: -1.00 -76.71 401.40 0.03 -76.68
By element:
Atomic # 1 Polarization: 18.10 SS G_CDS: -0.62 Total: 17.49 kcal
Atomic # 6 Polarization: -3.89 SS G_CDS: 6.32 Total: 2.43 kcal
Atomic # 7 Polarization: -119.22 SS G_CDS: -7.65 Total: -126.87 kcal
Atomic # 8 Polarization: -16.72 SS G_CDS: -0.05 Total: -16.77 kcal
Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal
Total: -76.71 0.03 -76.68 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000978362898.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.706 kcal
(2) G-P(sol) polarization free energy of solvation -76.715 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.681 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds