Wall clock time and date at job start Wed Apr 1 2020 02:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30784 * 125.72229 * 2 1 4 4 C 1.34430 * 109.32290 * 180.02562 * 3 2 1 5 5 C 1.33863 * 107.79563 * 0.02562 * 4 3 2 6 6 N 1.34409 * 125.72491 * 179.97438 * 2 1 3 7 7 C 1.46477 * 128.44538 * 359.81180 * 6 2 1 8 8 C 1.53280 * 108.69511 * 197.34413 * 7 6 2 9 9 H 1.08997 * 109.39712 * 69.27923 * 8 7 6 10 10 C 1.50704 * 109.42970 * 189.16417 * 8 7 6 11 11 O 1.21275 * 120.00004 * 0.23538 * 10 8 7 12 12 N 1.34773 * 119.99651 * 180.23516 * 10 8 7 13 13 C 1.46505 * 119.99643 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.46970 * 180.02562 * 13 12 10 15 15 H 1.09005 * 115.49371 * 330.38300 * 14 13 12 16 16 C 1.52993 * 117.44142 * 185.00243 * 14 13 12 17 17 H 1.08995 * 120.26877 * 3.82915 * 16 14 13 18 18 C 1.54389 * 118.12058 * 160.80732 * 16 14 13 19 19 N 1.48152 * 104.72216 * 87.13278 * 18 16 14 20 20 C 1.36937 * 127.84016 * 140.46938 * 19 18 16 21 21 H 1.08001 * 119.99915 * 344.32959 * 20 19 18 22 22 C 1.38808 * 119.99860 * 164.32415 * 20 19 18 23 23 N 1.31612 * 120.00235 * 350.60103 * 22 20 19 24 24 Si 1.86804 * 119.99911 * 170.60527 * 22 20 19 25 25 H 1.48507 * 109.46890 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47118 * 119.99908 * 24 22 20 27 27 H 1.48489 * 109.47079 * 240.00049 * 24 22 20 28 28 C 1.47363 * 104.71779 * 321.30162 * 19 18 16 29 29 C 1.52998 * 117.44738 * 115.76075 * 14 13 12 30 30 H 1.09007 * 119.53418 * 355.88086 * 29 14 13 31 31 C 1.53126 * 109.70447 * 309.23067 * 8 7 6 32 32 C 1.50710 * 128.68222 * 179.90893 * 5 4 3 33 33 H 1.08998 * 109.46968 * 90.03333 * 1 2 3 34 34 H 1.09005 * 109.47062 * 210.02483 * 1 2 3 35 35 H 1.08997 * 109.47059 * 330.02345 * 1 2 3 36 36 H 1.08000 * 126.10245 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.59918 * 77.57508 * 7 6 2 38 38 H 1.09004 * 109.59564 * 317.10443 * 7 6 2 39 39 H 0.97005 * 120.00306 * 0.02562 * 12 10 8 40 40 H 1.08995 * 109.47080 * 60.00897 * 13 12 10 41 41 H 1.08996 * 109.47243 * 300.00010 * 13 12 10 42 42 H 1.09007 * 110.41046 * 205.97243 * 18 16 14 43 43 H 1.08999 * 110.40927 * 328.28864 * 18 16 14 44 44 H 0.97005 * 120.00576 * 179.97438 * 23 22 20 45 45 H 1.08998 * 108.98331 * 279.83195 * 28 19 18 46 46 H 1.08999 * 111.33126 * 157.75305 * 28 19 18 47 47 H 1.08993 * 109.49718 * 189.86120 * 31 8 7 48 48 H 1.08995 * 109.49826 * 309.96434 * 31 8 7 49 49 H 1.08998 * 109.74637 * 76.10178 * 32 5 4 50 50 H 1.09009 * 109.74449 * 315.38480 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2918 -1.0912 0.0005 7 6 1.8922 -2.5004 0.0049 8 6 3.0927 -3.3501 0.4365 9 1 3.3041 -3.1692 1.4904 10 6 2.7738 -4.8088 0.2323 11 8 1.6964 -5.1367 -0.2178 12 7 3.6859 -5.7488 0.5497 13 6 3.3757 -7.1668 0.3517 14 6 4.5711 -8.0162 0.7883 15 1 5.5472 -7.5431 0.6804 16 6 4.4886 -9.5251 0.5493 17 1 3.6320 -9.9529 0.0287 18 6 5.8032 -10.3348 0.5497 19 7 6.0275 -10.6880 1.9709 20 6 6.4977 -11.8695 2.4788 21 1 6.5142 -12.7547 1.8602 22 6 6.9533 -11.9295 3.7886 23 7 7.1079 -10.8222 4.4830 24 14 7.3469 -13.5819 4.5659 25 1 7.0915 -14.6649 3.5823 26 1 8.7748 -13.6100 4.9727 27 1 6.4879 -13.7845 5.7600 28 6 5.6126 -9.4912 2.7240 29 6 4.3710 -8.9563 1.9786 30 1 3.4233 -8.9471 2.5173 31 6 4.3187 -2.9746 -0.4006 32 6 4.7919 -1.5690 -0.0043 33 1 -0.3633 -0.0006 -1.0276 34 1 -0.3633 -0.8898 0.5142 35 1 -0.3633 0.8902 0.5135 36 1 4.4170 1.3397 -0.0011 37 1 1.5773 -2.7942 -0.9963 38 1 1.0706 -2.6452 0.7064 39 1 4.5476 -5.4865 0.9100 40 1 3.1658 -7.3491 -0.7022 41 1 2.5032 -7.4346 0.9476 42 1 5.6945 -11.2364 -0.0533 43 1 6.6253 -9.7250 0.1753 44 1 7.4259 -10.8641 5.3985 45 1 6.4182 -8.7575 2.6956 46 1 5.3595 -9.7393 3.7548 47 1 5.1180 -3.6926 -0.2174 48 1 4.0544 -2.9856 -1.4580 49 1 5.2360 -1.5967 0.9907 50 1 5.5260 -1.2105 -0.7260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978632575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:54 Heat of formation + Delta-G solvation = 73.076818 kcal Electronic energy + Delta-G solvation = -29280.786232 eV Core-core repulsion = 25310.138441 eV Total energy + Delta-G solvation = -3970.647791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.71293 -40.28604 -38.91264 -36.68477 -35.23238 -33.74960 -33.41812 -31.70157 -30.88826 -30.28287 -27.61677 -27.21905 -26.75924 -25.38378 -24.27045 -22.83537 -21.39286 -21.24797 -20.66361 -19.78164 -19.38223 -19.30478 -17.63190 -16.94058 -16.80799 -16.31395 -16.10585 -15.64048 -14.95648 -14.88394 -14.48808 -14.46840 -14.28902 -14.08253 -13.91361 -13.56531 -13.32383 -13.30203 -13.12107 -12.87069 -12.73210 -12.71104 -12.33340 -12.20687 -11.93756 -11.62963 -11.48972 -11.32751 -11.22884 -10.89592 -10.77808 -10.37343 -10.20715 -10.18264 -10.15886 -9.84350 -9.79313 -9.56854 -9.19968 -9.11790 -8.69855 -8.46799 -6.92198 -5.87025 -3.21367 1.73926 2.25577 2.31539 2.85506 2.92518 3.32963 3.39488 3.41746 3.80955 3.99606 4.09650 4.14434 4.20538 4.34995 4.39991 4.60948 4.71892 4.75129 4.79099 4.85026 4.97169 5.10425 5.17856 5.19532 5.21671 5.27177 5.32512 5.33686 5.35101 5.41345 5.49387 5.57253 5.62434 5.66892 5.78235 5.82083 5.86986 6.09786 6.15081 6.16661 6.44365 6.48704 6.56959 6.62175 6.83145 6.90643 7.20713 7.29988 7.45611 7.65682 7.82936 7.88116 8.14560 9.05757 9.67658 10.43687 11.27494 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.001737 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.092506 B =16117.659569 C =16509.843380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.209 3.791 3 N -0.495 5.495 4 C -0.021 4.021 5 C -0.030 4.030 6 N -0.452 5.452 7 C 0.124 3.876 8 C -0.121 4.121 9 H 0.110 0.890 10 C 0.523 3.477 11 O -0.542 6.542 12 N -0.717 5.717 13 C 0.154 3.846 14 C -0.148 4.148 15 H 0.103 0.897 16 C -0.166 4.166 17 H 0.105 0.895 18 C 0.155 3.845 19 N -0.594 5.594 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.186 3.814 29 C -0.169 4.169 30 H 0.101 0.899 31 C -0.117 4.117 32 C -0.043 4.043 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.404 0.596 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.025 0.975 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 19.952 -9.610 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.053 4.053 3 N -0.214 5.214 4 C -0.169 4.169 5 C -0.144 4.144 6 N -0.135 5.135 7 C 0.002 3.998 8 C -0.143 4.143 9 H 0.128 0.872 10 C 0.307 3.693 11 O -0.419 6.419 12 N -0.368 5.368 13 C 0.031 3.969 14 C -0.167 4.167 15 H 0.121 0.879 16 C -0.186 4.186 17 H 0.123 0.877 18 C 0.029 3.971 19 N -0.317 5.317 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.561 5.561 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 C 0.060 3.940 29 C -0.189 4.189 30 H 0.119 0.881 31 C -0.155 4.155 32 C -0.081 4.081 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.187 0.813 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.105 0.895 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.590 20.203 -9.712 24.382 hybrid contribution 0.906 -1.551 0.697 1.926 sum -8.684 18.652 -9.016 22.464 Atomic orbital electron populations 1.20190 0.84928 1.04020 1.03581 1.23127 0.95652 0.81075 1.05458 1.70461 1.02018 1.27997 1.20953 1.21826 0.94836 0.91936 1.08284 1.21133 0.85593 0.95489 1.12212 1.45272 1.06420 1.07115 1.54726 1.21689 0.96998 0.76619 1.04527 1.21581 0.96757 0.92472 1.03462 0.87191 1.20092 0.84328 0.87043 0.77805 1.90731 1.23483 1.82774 1.44929 1.45998 1.18708 1.06789 1.65285 1.20911 0.96778 0.78066 1.01122 1.22490 0.98168 0.91884 1.04182 0.87870 1.23835 1.01459 0.91925 1.01394 0.87726 1.21145 0.91764 0.95764 0.88471 1.45011 1.74472 1.13169 0.99088 1.19042 1.34629 0.85783 0.96244 0.90577 1.24905 1.00070 0.97339 0.97913 1.69914 1.50801 1.25116 1.10263 0.86045 0.77643 0.82876 0.79179 1.20315 1.21642 1.21584 1.20900 0.89106 0.87514 0.96431 1.24391 1.02598 1.01273 0.90681 0.88090 1.21701 0.96118 0.97481 1.00195 1.20231 0.93063 0.91549 1.03302 0.90132 0.90810 0.89158 0.81350 0.88522 0.88415 0.76079 0.91067 0.91208 0.93082 0.95736 0.93589 0.96117 0.89455 0.89578 0.90544 0.89511 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.24 36.01 0.37 -0.09 16 2 C 0.21 2.14 7.94 -155.75 -1.24 0.90 16 3 N -0.49 -6.02 11.27 -11.02 -0.12 -6.14 16 4 C -0.02 -0.22 11.84 -17.95 -0.21 -0.43 16 5 C -0.03 -0.27 6.57 -81.73 -0.54 -0.81 16 6 N -0.45 -4.20 3.13 -109.43 -0.34 -4.54 16 7 C 0.12 1.00 5.39 -3.91 -0.02 0.98 16 8 C -0.12 -0.88 2.52 -91.56 -0.23 -1.11 16 9 H 0.11 0.72 8.11 -51.93 -0.42 0.30 16 10 C 0.52 5.24 7.15 -10.99 -0.08 5.16 16 11 O -0.54 -7.35 15.83 5.56 0.09 -7.26 16 12 N -0.72 -6.84 5.37 -60.29 -0.32 -7.16 16 13 C 0.15 1.81 5.95 -4.04 -0.02 1.79 16 14 C -0.15 -2.04 5.42 -90.62 -0.49 -2.53 16 15 H 0.10 1.39 8.04 -51.93 -0.42 0.98 16 16 C -0.17 -2.73 6.85 -89.22 -0.61 -3.34 16 17 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 18 C 0.15 3.09 7.05 -2.40 -0.02 3.07 16 19 N -0.59 -14.72 3.37 -169.50 -0.57 -15.29 16 20 C -0.23 -6.23 10.34 -15.06 -0.16 -6.39 16 21 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 22 C -0.01 -0.14 5.39 -17.43 -0.09 -0.23 16 23 N -0.91 -26.15 10.90 55.49 0.61 -25.54 16 24 Si 0.91 21.50 29.56 -169.99 -5.03 16.47 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.19 4.27 5.62 -2.85 -0.02 4.25 16 29 C -0.17 -2.98 6.72 -89.23 -0.60 -3.58 16 30 H 0.10 1.71 8.12 -51.92 -0.42 1.28 16 31 C -0.12 -0.70 5.23 -26.40 -0.14 -0.84 16 32 C -0.04 -0.25 6.31 -27.61 -0.17 -0.43 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.40 7.59 -51.93 -0.39 0.00 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.10 0.83 7.81 -51.93 -0.41 0.43 16 38 H 0.10 0.74 7.72 -51.93 -0.40 0.33 16 39 H 0.40 3.04 7.74 -40.82 -0.32 2.73 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.90 7.94 -51.93 -0.41 0.48 16 42 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 2.26 6.60 -51.93 -0.34 1.92 16 47 H 0.09 0.41 7.31 -51.93 -0.38 0.03 16 48 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 49 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -33.64 399.89 -12.04 -45.69 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.11 Total: 1.39 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -4.27 Total: -3.63 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.76 Total: -58.68 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.26 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.64 -12.04 -45.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978632575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.764 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds