Wall clock time and date at job start Wed Apr 1 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30784 * 125.72229 * 2 1 4 4 C 1.34430 * 109.32290 * 180.02562 * 3 2 1 5 5 C 1.33863 * 107.79563 * 0.02562 * 4 3 2 6 6 N 1.34409 * 125.72491 * 179.97438 * 2 1 3 7 7 C 1.46477 * 128.44538 * 359.81180 * 6 2 1 8 8 C 1.53280 * 108.69511 * 197.34413 * 7 6 2 9 9 H 1.08997 * 109.39712 * 69.27923 * 8 7 6 10 10 C 1.50704 * 109.42970 * 189.16417 * 8 7 6 11 11 O 1.21275 * 120.00004 * 0.23538 * 10 8 7 12 12 N 1.34773 * 119.99651 * 180.23516 * 10 8 7 13 13 C 1.46505 * 119.99643 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.46970 * 180.02562 * 13 12 10 15 15 H 1.09005 * 115.49371 * 330.38300 * 14 13 12 16 16 C 1.52993 * 117.44142 * 185.00243 * 14 13 12 17 17 H 1.08995 * 120.26877 * 3.82915 * 16 14 13 18 18 C 1.54389 * 118.12058 * 160.80732 * 16 14 13 19 19 N 1.48152 * 104.72216 * 87.13278 * 18 16 14 20 20 C 1.36937 * 127.84016 * 140.46938 * 19 18 16 21 21 H 1.08001 * 119.99915 * 344.32959 * 20 19 18 22 22 C 1.38808 * 119.99860 * 164.32415 * 20 19 18 23 23 N 1.31612 * 120.00235 * 350.60103 * 22 20 19 24 24 Si 1.86804 * 119.99911 * 170.60527 * 22 20 19 25 25 H 1.48507 * 109.46890 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47118 * 119.99908 * 24 22 20 27 27 H 1.48489 * 109.47079 * 240.00049 * 24 22 20 28 28 C 1.47363 * 104.71779 * 321.30162 * 19 18 16 29 29 C 1.52998 * 117.44738 * 115.76075 * 14 13 12 30 30 H 1.09007 * 119.53418 * 355.88086 * 29 14 13 31 31 C 1.53126 * 109.70447 * 309.23067 * 8 7 6 32 32 C 1.50710 * 128.68222 * 179.90893 * 5 4 3 33 33 H 1.08998 * 109.46968 * 90.03333 * 1 2 3 34 34 H 1.09005 * 109.47062 * 210.02483 * 1 2 3 35 35 H 1.08997 * 109.47059 * 330.02345 * 1 2 3 36 36 H 1.08000 * 126.10245 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.59918 * 77.57508 * 7 6 2 38 38 H 1.09004 * 109.59564 * 317.10443 * 7 6 2 39 39 H 0.97005 * 120.00306 * 0.02562 * 12 10 8 40 40 H 1.08995 * 109.47080 * 60.00897 * 13 12 10 41 41 H 1.08996 * 109.47243 * 300.00010 * 13 12 10 42 42 H 1.09007 * 110.41046 * 205.97243 * 18 16 14 43 43 H 1.08999 * 110.40927 * 328.28864 * 18 16 14 44 44 H 0.97005 * 120.00576 * 179.97438 * 23 22 20 45 45 H 1.08998 * 108.98331 * 279.83195 * 28 19 18 46 46 H 1.08999 * 111.33126 * 157.75305 * 28 19 18 47 47 H 1.08993 * 109.49718 * 189.86120 * 31 8 7 48 48 H 1.08995 * 109.49826 * 309.96434 * 31 8 7 49 49 H 1.08998 * 109.74637 * 76.10178 * 32 5 4 50 50 H 1.09009 * 109.74449 * 315.38480 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2918 -1.0912 0.0005 7 6 1.8922 -2.5004 0.0049 8 6 3.0927 -3.3501 0.4365 9 1 3.3041 -3.1692 1.4904 10 6 2.7738 -4.8088 0.2323 11 8 1.6964 -5.1367 -0.2178 12 7 3.6859 -5.7488 0.5497 13 6 3.3757 -7.1668 0.3517 14 6 4.5711 -8.0162 0.7883 15 1 5.5472 -7.5431 0.6804 16 6 4.4886 -9.5251 0.5493 17 1 3.6320 -9.9529 0.0287 18 6 5.8032 -10.3348 0.5497 19 7 6.0275 -10.6880 1.9709 20 6 6.4977 -11.8695 2.4788 21 1 6.5142 -12.7547 1.8602 22 6 6.9533 -11.9295 3.7886 23 7 7.1079 -10.8222 4.4830 24 14 7.3469 -13.5819 4.5659 25 1 7.0915 -14.6649 3.5823 26 1 8.7748 -13.6100 4.9727 27 1 6.4879 -13.7845 5.7600 28 6 5.6126 -9.4912 2.7240 29 6 4.3710 -8.9563 1.9786 30 1 3.4233 -8.9471 2.5173 31 6 4.3187 -2.9746 -0.4006 32 6 4.7919 -1.5690 -0.0043 33 1 -0.3633 -0.0006 -1.0276 34 1 -0.3633 -0.8898 0.5142 35 1 -0.3633 0.8902 0.5135 36 1 4.4170 1.3397 -0.0011 37 1 1.5773 -2.7942 -0.9963 38 1 1.0706 -2.6452 0.7064 39 1 4.5476 -5.4865 0.9100 40 1 3.1658 -7.3491 -0.7022 41 1 2.5032 -7.4346 0.9476 42 1 5.6945 -11.2364 -0.0533 43 1 6.6253 -9.7250 0.1753 44 1 7.4259 -10.8641 5.3985 45 1 6.4182 -8.7575 2.6956 46 1 5.3595 -9.7393 3.7548 47 1 5.1180 -3.6926 -0.2174 48 1 4.0544 -2.9856 -1.4580 49 1 5.2360 -1.5967 0.9907 50 1 5.5260 -1.2105 -0.7260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978632575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:53 Heat of formation + Delta-G solvation = 53.119373 kcal Electronic energy + Delta-G solvation = -29281.651652 eV Core-core repulsion = 25310.138441 eV Total energy + Delta-G solvation = -3971.513211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.39027 -41.15763 -40.30565 -37.36114 -36.40618 -35.06702 -34.28526 -32.84811 -32.17080 -30.90883 -29.02637 -28.78866 -27.36427 -26.85533 -25.17250 -23.47909 -22.85475 -22.05699 -21.73627 -20.96215 -20.75001 -19.94760 -18.85609 -18.36801 -17.55712 -17.19976 -16.87232 -16.75492 -16.40078 -15.94463 -15.56521 -15.29582 -15.07813 -15.00533 -14.84935 -14.65625 -14.57099 -14.30220 -14.05082 -13.93626 -13.77419 -13.36240 -13.22750 -13.18231 -12.93219 -12.91171 -12.80682 -12.75788 -12.32582 -12.15409 -11.98640 -11.95745 -11.90172 -11.78806 -11.09616 -10.94868 -10.93663 -10.66700 -10.57121 -10.50266 -10.06993 -9.14050 -8.89108 -7.93459 -5.29079 1.06345 1.45691 1.46424 1.49326 1.57098 1.62045 2.11630 2.14777 2.47086 2.73467 3.21739 3.25100 3.48953 3.54821 3.60239 3.61743 3.72483 3.79236 3.84491 4.00688 4.16781 4.21462 4.24194 4.28734 4.30401 4.41654 4.45345 4.54953 4.56870 4.64743 4.68990 4.69778 4.74396 4.84097 4.92505 4.93382 5.00129 5.03222 5.03993 5.12191 5.19634 5.35702 5.42691 5.44583 5.45652 5.55888 5.66693 5.82749 6.18240 6.23894 6.45871 7.02594 7.11404 7.12736 7.68988 8.45896 9.20441 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.001737 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.092506 B =16117.659569 C =16509.843380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.193 3.807 3 N -0.533 5.533 4 C -0.049 4.049 5 C -0.029 4.029 6 N -0.453 5.453 7 C 0.125 3.875 8 C -0.111 4.111 9 H 0.124 0.876 10 C 0.527 3.473 11 O -0.577 6.577 12 N -0.710 5.710 13 C 0.163 3.837 14 C -0.103 4.103 15 H 0.113 0.887 16 C -0.160 4.160 17 H 0.126 0.874 18 C 0.149 3.851 19 N -0.621 5.621 20 C -0.241 4.241 21 H 0.078 0.922 22 C -0.062 4.062 23 N -0.945 5.945 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.192 3.808 29 C -0.182 4.182 30 H 0.109 0.891 31 C -0.113 4.113 32 C -0.039 4.039 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.182 0.818 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.417 0.583 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.029 0.971 44 H 0.250 0.750 45 H 0.001 0.999 46 H 0.048 0.952 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.102 0.898 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 20.023 -10.693 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 N -0.253 5.253 4 C -0.195 4.195 5 C -0.143 4.143 6 N -0.137 5.137 7 C 0.002 3.998 8 C -0.132 4.132 9 H 0.142 0.858 10 C 0.313 3.687 11 O -0.457 6.457 12 N -0.361 5.361 13 C 0.039 3.961 14 C -0.122 4.122 15 H 0.131 0.869 16 C -0.180 4.180 17 H 0.144 0.856 18 C 0.024 3.976 19 N -0.345 5.345 20 C -0.370 4.370 21 H 0.096 0.904 22 C -0.256 4.256 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.190 1.190 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.066 3.934 29 C -0.202 4.202 30 H 0.127 0.873 31 C -0.151 4.151 32 C -0.077 4.077 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.199 0.801 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.254 0.746 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.066 0.934 47 H 0.124 0.876 48 H 0.087 0.913 49 H 0.120 0.880 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.713 20.286 -10.824 24.960 hybrid contribution 0.960 -1.541 0.979 2.063 sum -8.754 18.744 -9.844 22.910 Atomic orbital electron populations 1.20298 0.83087 1.04814 1.04383 1.23695 0.96911 0.81091 1.05226 1.70420 1.03173 1.29393 1.22334 1.22201 0.94837 0.93090 1.09392 1.21627 0.86410 0.95625 1.10682 1.45382 1.06552 1.07324 1.54435 1.21712 0.97604 0.76113 1.04340 1.21521 0.96969 0.90235 1.04517 0.85828 1.20431 0.83577 0.87919 0.76746 1.90726 1.25015 1.83425 1.46566 1.45873 1.19318 1.05854 1.65086 1.20709 0.95197 0.78853 1.01310 1.22405 0.99568 0.90636 0.99541 0.86919 1.23767 1.00178 0.93698 1.00359 0.85622 1.21301 0.93602 0.96700 0.86025 1.45340 1.74754 1.12949 1.01493 1.19397 1.33991 0.87023 0.96595 0.90380 1.25715 1.00728 1.00582 0.98537 1.70094 1.52044 1.26983 1.10178 0.85035 0.76935 0.79349 0.78136 1.18969 1.21780 1.21835 1.20629 0.90694 0.86834 0.95195 1.24063 1.00360 1.04746 0.91029 0.87344 1.21711 0.95924 0.97993 0.99426 1.20355 0.92000 0.90646 1.04695 0.89266 0.89427 0.88919 0.80056 0.89201 0.88013 0.74608 0.90271 0.91834 0.92626 0.95347 0.94130 0.98111 0.93389 0.87606 0.91273 0.87978 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.24 71.24 0.73 -0.14 16 2 C 0.19 3.87 7.94 138.25 1.10 4.96 16 3 N -0.53 -12.97 11.27 -188.77 -2.13 -15.10 16 4 C -0.05 -0.98 11.84 83.30 0.99 0.01 16 5 C -0.03 -0.48 6.57 40.73 0.27 -0.21 16 6 N -0.45 -7.88 3.13 -500.12 -1.57 -9.45 16 7 C 0.12 1.80 5.39 86.48 0.47 2.27 16 8 C -0.11 -1.32 2.52 -11.40 -0.03 -1.35 16 9 H 0.12 1.21 8.11 -2.39 -0.02 1.19 16 10 C 0.53 9.14 7.15 87.66 0.63 9.77 16 11 O -0.58 -14.51 15.83 -3.02 -0.05 -14.55 16 12 N -0.71 -11.15 5.37 -463.06 -2.49 -13.64 16 13 C 0.16 3.28 5.95 86.38 0.51 3.79 16 14 C -0.10 -2.52 5.42 -10.80 -0.06 -2.57 16 15 H 0.11 2.65 8.04 -2.38 -0.02 2.63 16 16 C -0.16 -4.88 6.85 -9.89 -0.07 -4.95 16 17 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 18 C 0.15 5.75 7.05 86.53 0.61 6.36 16 19 N -0.62 -31.01 3.37 -690.16 -2.32 -33.34 16 20 C -0.24 -13.27 10.34 84.03 0.87 -12.40 16 21 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 22 C -0.06 -3.45 5.39 84.86 0.46 -2.99 16 23 N -0.95 -55.57 10.90 21.65 0.24 -55.34 16 24 Si 0.98 44.71 29.56 68.60 2.03 46.74 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 28 C 0.19 8.96 5.62 86.68 0.49 9.45 16 29 C -0.18 -6.17 6.72 -9.89 -0.07 -6.24 16 30 H 0.11 3.53 8.12 -2.38 -0.02 3.51 16 31 C -0.11 -0.99 5.23 30.81 0.16 -0.83 16 32 C -0.04 -0.35 6.31 30.03 0.19 -0.16 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.84 7.59 -2.38 -0.02 0.82 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.09 1.44 7.81 -2.39 -0.02 1.42 16 38 H 0.10 1.38 7.72 -2.39 -0.02 1.36 16 39 H 0.42 4.64 7.74 -92.70 -0.72 3.92 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16 42 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 45 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.05 2.59 6.60 -2.39 -0.02 2.57 16 47 H 0.11 0.55 7.31 -2.39 -0.02 0.54 16 48 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 49 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -75.17 399.89 1.18 -73.99 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.23 Total: 15.91 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 7.24 Total: 4.78 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -8.27 Total: -126.86 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.05 Total: -14.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -75.17 1.18 -73.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978632575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.109 kcal (2) G-P(sol) polarization free energy of solvation -75.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds