Wall clock time and date at job start Wed Apr 1 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30787 * 125.72317 * 2 1 4 4 C 1.34424 * 109.31894 * 179.97438 * 3 2 1 5 5 C 1.33857 * 107.79933 * 359.97438 * 4 3 2 6 6 N 1.34403 * 125.72406 * 179.97438 * 2 1 3 7 7 C 1.46472 * 128.44442 * 0.16933 * 6 2 1 8 8 C 1.53279 * 108.69578 * 162.64856 * 7 6 2 9 9 C 1.53120 * 109.71061 * 50.76629 * 8 7 6 10 10 H 1.09000 * 109.51805 * 50.06582 * 9 8 7 11 11 C 1.50696 * 109.49587 * 170.14892 * 9 8 7 12 12 O 1.21277 * 120.00289 * 359.83968 * 11 9 8 13 13 N 1.34779 * 119.99925 * 179.83692 * 11 9 8 14 14 C 1.46498 * 120.00126 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47012 * 179.97438 * 14 13 11 16 16 H 1.09001 * 115.49674 * 29.62548 * 15 14 13 17 17 C 1.53004 * 117.44692 * 244.24080 * 15 14 13 18 18 H 1.08997 * 119.53515 * 4.12209 * 17 15 14 19 19 C 1.54384 * 118.89992 * 161.25393 * 17 15 14 20 20 N 1.47543 * 105.08808 * 85.91053 * 19 17 15 21 21 C 1.36937 * 127.52484 * 140.87416 * 20 19 17 22 22 H 1.08001 * 119.99748 * 196.46130 * 21 20 19 23 23 C 1.38806 * 120.00200 * 16.45591 * 21 20 19 24 24 N 1.31621 * 119.99863 * 9.04868 * 23 21 20 25 25 Si 1.86801 * 120.00140 * 189.04769 * 23 21 20 26 26 H 1.48493 * 109.47241 * 90.00403 * 25 23 21 27 27 H 1.48503 * 109.47182 * 210.00417 * 25 23 21 28 28 H 1.48503 * 109.47047 * 330.00090 * 25 23 21 29 29 C 1.48146 * 104.63087 * 321.66788 * 20 19 17 30 30 C 1.52997 * 117.44249 * 175.00031 * 15 14 13 31 31 H 1.09003 * 120.26421 * 356.18039 * 30 15 14 32 32 C 1.50718 * 128.67866 * 180.08293 * 5 4 3 33 33 H 1.09007 * 109.46957 * 270.00326 * 1 2 3 34 34 H 1.08992 * 109.46950 * 30.00053 * 1 2 3 35 35 H 1.09001 * 109.47347 * 150.00413 * 1 2 3 36 36 H 1.08004 * 126.09639 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.60264 * 282.39907 * 7 6 2 38 38 H 1.09006 * 109.60063 * 42.87689 * 7 6 2 39 39 H 1.08999 * 109.42819 * 290.69761 * 8 7 6 40 40 H 1.08998 * 109.43298 * 170.84410 * 8 7 6 41 41 H 0.97000 * 119.99644 * 0.02562 * 13 11 9 42 42 H 1.09004 * 109.46830 * 60.00580 * 14 13 11 43 43 H 1.09000 * 109.47475 * 300.00526 * 14 13 11 44 44 H 1.09004 * 110.40426 * 205.99953 * 19 17 15 45 45 H 1.08996 * 110.41110 * 328.42582 * 19 17 15 46 46 H 0.97002 * 119.99904 * 179.97438 * 24 23 21 47 47 H 1.08997 * 110.40851 * 280.00014 * 29 20 19 48 48 H 1.08999 * 110.40565 * 157.68370 * 29 20 19 49 49 H 1.08993 * 109.74139 * 44.60708 * 32 5 4 50 50 H 1.09000 * 109.74627 * 283.88695 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6822 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2918 -1.0911 0.0005 7 6 1.8922 -2.5003 -0.0023 8 6 3.0925 -3.3505 -0.4335 9 6 4.3188 -2.9743 0.4026 10 1 4.0556 -2.9846 1.4603 11 6 5.4239 -3.9671 0.1495 12 8 5.2479 -4.8871 -0.6209 13 7 6.6078 -3.8327 0.7794 14 6 7.6820 -4.7982 0.5338 15 6 8.9086 -4.4190 1.3659 16 1 8.6987 -3.9049 2.3038 17 6 10.1766 -4.0169 0.6100 18 1 10.1542 -3.9457 -0.4774 19 6 11.2705 -3.2235 1.3567 20 7 12.1045 -4.2466 2.0159 21 6 13.4669 -4.2497 2.1543 22 1 13.9811 -5.1630 2.4144 23 6 14.1869 -3.0790 1.9600 24 7 13.5546 -1.9331 1.8195 25 14 16.0532 -3.1296 1.8979 26 1 16.4963 -3.3411 0.4965 27 1 16.6003 -1.8441 2.4014 28 1 16.5466 -4.2438 2.7467 29 6 11.1421 -5.2750 2.4751 30 6 10.1026 -5.3752 1.3379 31 1 10.0398 -6.3168 0.7924 32 6 4.7919 -1.5690 0.0041 33 1 -0.3633 0.0001 1.0277 34 1 -0.3633 0.8899 -0.5138 35 1 -0.3634 -0.8900 -0.5138 36 1 4.4170 1.3396 0.0003 37 1 1.5779 -2.7932 0.9995 38 1 1.0701 -2.6459 -0.7032 39 1 3.3036 -3.1714 -1.4877 40 1 2.8618 -4.4054 -0.2847 41 1 6.7484 -3.0972 1.3959 42 1 7.9440 -4.7888 -0.5242 43 1 7.3454 -5.7959 0.8159 44 1 11.8549 -2.6289 0.6545 45 1 10.8235 -2.5838 2.1176 46 1 14.0578 -1.1149 1.6842 47 1 10.6624 -4.9598 3.4018 48 1 11.6458 -6.2314 2.6150 49 1 5.5261 -1.2104 0.7255 50 1 5.2358 -1.5968 -0.9910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978741697.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:00 Heat of formation + Delta-G solvation = 73.185763 kcal Electronic energy + Delta-G solvation = -29296.409107 eV Core-core repulsion = 25325.766041 eV Total energy + Delta-G solvation = -3970.643067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.70019 -40.18036 -38.85954 -36.65785 -35.10780 -33.87148 -33.31302 -31.62149 -30.87222 -30.10296 -27.91827 -27.20283 -26.64474 -24.95518 -24.60737 -22.91196 -21.21964 -20.99079 -20.73385 -19.81179 -19.32910 -19.26945 -17.39989 -17.09353 -16.85000 -16.36348 -16.00952 -15.66854 -14.93941 -14.50772 -14.50543 -14.46176 -14.30327 -14.05109 -13.84833 -13.61225 -13.38218 -13.30734 -13.02394 -12.78321 -12.73801 -12.68720 -12.24273 -12.21684 -11.88813 -11.62172 -11.48767 -11.28588 -11.18508 -10.86871 -10.73707 -10.33915 -10.29601 -10.15478 -9.97732 -9.80638 -9.80253 -9.50281 -9.15181 -9.05063 -8.66278 -8.46638 -6.89227 -5.83457 -3.18000 1.73119 2.37862 2.41357 2.87001 2.92108 3.36029 3.41489 3.43271 3.92020 4.04797 4.12352 4.14995 4.18483 4.36218 4.42903 4.59212 4.66224 4.71622 4.81425 4.88388 4.97239 5.10255 5.14940 5.24601 5.25237 5.28958 5.32402 5.38556 5.39936 5.45435 5.46943 5.62724 5.64498 5.71861 5.83827 5.87202 5.90679 6.08805 6.19508 6.25648 6.48813 6.50074 6.61128 6.66284 6.87020 6.91543 7.31426 7.34302 7.49203 7.68669 7.83680 8.00296 8.17928 9.08799 9.70755 10.47107 11.30911 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.001881 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.236598 B =14883.029349 C =16116.137381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.204 3.796 3 N -0.493 5.493 4 C -0.017 4.017 5 C -0.024 4.024 6 N -0.453 5.453 7 C 0.103 3.897 8 C -0.114 4.114 9 C -0.111 4.111 10 H 0.103 0.897 11 C 0.519 3.481 12 O -0.542 6.542 13 N -0.720 5.720 14 C 0.154 3.846 15 C -0.148 4.148 16 H 0.103 0.897 17 C -0.169 4.169 18 H 0.101 0.899 19 C 0.186 3.814 20 N -0.594 5.594 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.155 3.845 30 C -0.167 4.167 31 H 0.104 0.896 32 C -0.036 4.036 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.172 0.828 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.403 0.597 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.021 0.979 46 H 0.255 0.745 47 H 0.025 0.975 48 H 0.050 0.950 49 H 0.096 0.904 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.651 -0.731 -2.940 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 N -0.213 5.213 4 C -0.164 4.164 5 C -0.138 4.138 6 N -0.138 5.138 7 C -0.019 4.019 8 C -0.152 4.152 9 C -0.133 4.133 10 H 0.121 0.879 11 C 0.304 3.696 12 O -0.419 6.419 13 N -0.371 5.371 14 C 0.031 3.969 15 C -0.167 4.167 16 H 0.121 0.879 17 C -0.189 4.189 18 H 0.119 0.881 19 C 0.060 3.940 20 N -0.318 5.318 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.561 5.561 25 Si 0.743 3.257 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.029 3.971 30 C -0.187 4.187 31 H 0.122 0.878 32 C -0.074 4.074 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.189 0.811 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.238 0.762 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.069 0.931 49 H 0.114 0.886 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.844 -0.585 -3.476 27.075 hybrid contribution 1.383 -0.481 0.234 1.483 sum -25.462 -1.066 -3.242 25.689 Atomic orbital electron populations 1.20160 0.85000 1.03892 1.03438 1.23125 0.95604 0.81280 1.05742 1.70469 1.02013 1.28052 1.20732 1.21876 0.94874 0.91914 1.07767 1.20946 0.85248 0.95311 1.12279 1.45293 1.06301 1.07211 1.54971 1.22035 0.98834 0.77702 1.03307 1.21687 0.91841 1.00712 1.00926 1.21437 0.94721 0.94629 1.02479 0.87942 1.20317 0.83157 0.85758 0.80342 1.90713 1.81483 1.33702 1.36000 1.46048 1.13281 1.31158 1.46582 1.20886 0.84872 0.91724 0.99412 1.22493 0.88783 1.04666 1.00732 0.87903 1.24383 0.96614 0.99513 0.98360 0.88090 1.20945 0.88315 0.90157 0.94585 1.45045 1.01860 1.21077 1.63778 1.19002 0.79895 0.94431 1.42390 0.90628 1.24903 0.98328 0.94974 1.02018 1.69904 1.34023 0.97494 1.54684 0.86107 0.84824 0.76955 0.77798 1.21483 1.21622 1.20519 1.21140 0.89564 0.93703 0.92731 1.23839 0.97533 0.94365 1.02981 0.87773 1.20204 0.93459 0.89964 1.03809 0.90218 0.89194 0.91014 0.81119 0.89523 0.88721 0.90015 0.88282 0.76171 0.91289 0.91229 0.89364 0.96093 0.93538 0.95760 0.93127 0.88564 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.24 36.01 0.37 0.00 16 2 C 0.20 1.97 7.94 -155.75 -1.24 0.73 16 3 N -0.49 -6.05 11.27 -11.02 -0.12 -6.17 16 4 C -0.02 -0.19 11.84 -17.95 -0.21 -0.40 16 5 C -0.02 -0.23 6.57 -81.73 -0.54 -0.77 16 6 N -0.45 -3.88 3.13 -109.43 -0.34 -4.23 16 7 C 0.10 0.57 6.68 -3.91 -0.03 0.54 16 8 C -0.11 -0.78 4.66 -26.52 -0.12 -0.91 16 9 C -0.11 -0.83 2.55 -91.43 -0.23 -1.07 16 10 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 11 C 0.52 5.47 7.13 -10.99 -0.08 5.39 16 12 O -0.54 -7.71 15.82 5.56 0.09 -7.62 16 13 N -0.72 -7.28 5.46 -60.30 -0.33 -7.61 16 14 C 0.15 1.89 5.95 -4.04 -0.02 1.87 16 15 C -0.15 -2.10 5.42 -90.62 -0.49 -2.59 16 16 H 0.10 1.45 8.04 -51.93 -0.42 1.03 16 17 C -0.17 -3.03 6.72 -89.22 -0.60 -3.63 16 18 H 0.10 1.74 8.12 -51.93 -0.42 1.32 16 19 C 0.19 4.32 5.64 -2.75 -0.02 4.30 16 20 N -0.59 -14.92 3.37 -169.35 -0.57 -15.49 16 21 C -0.23 -6.30 10.34 -15.06 -0.16 -6.46 16 22 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 23 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 24 N -0.91 -26.40 10.88 55.49 0.60 -25.79 16 25 Si 0.91 21.72 29.56 -169.99 -5.03 16.69 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 C 0.15 3.15 7.05 -2.41 -0.02 3.13 16 30 C -0.17 -2.81 6.85 -89.22 -0.61 -3.43 16 31 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 32 C -0.04 -0.27 5.44 -27.59 -0.15 -0.42 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.25 7.59 -51.93 -0.39 -0.14 16 36 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.36 7.72 -51.93 -0.40 -0.04 16 39 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 40 H 0.10 0.68 7.77 -51.93 -0.40 0.27 16 41 H 0.40 3.30 8.12 -40.82 -0.33 2.97 16 42 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 2.31 6.57 -51.93 -0.34 1.97 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.10 0.62 7.95 -51.93 -0.41 0.21 16 50 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -34.41 400.74 -12.05 -46.46 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.15 Total: 1.66 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -4.24 Total: -3.94 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.76 Total: -59.29 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.41 -12.05 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978741697.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.641 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds