Wall clock time and date at job start Wed Apr 1 2020 03:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46694 * 2 1 4 4 N 1.32159 * 120.53904 * 97.03661 * 3 2 1 5 5 C 1.31860 * 120.96950 * 180.28263 * 4 3 2 6 6 N 1.31885 * 122.09231 * 359.68093 * 5 4 3 7 7 C 1.32136 * 120.96588 * 0.02562 * 6 5 4 8 8 C 1.39926 * 120.53541 * 276.74512 * 3 2 1 9 9 C 1.47829 * 120.94318 * 0.03005 * 8 3 2 10 10 O 1.21552 * 119.99705 * 355.91764 * 9 8 3 11 11 N 1.34770 * 120.00480 * 175.64586 * 9 8 3 12 12 C 1.46498 * 120.00281 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.03136 * 36.04501 * 12 11 9 14 14 C 1.52526 * 109.04447 * 277.15606 * 12 11 9 15 15 C 1.53812 * 111.70264 * 185.39425 * 14 12 11 16 16 C 1.51620 * 107.02233 * 57.53526 * 15 14 12 17 17 H 1.08996 * 110.50089 * 55.20244 * 16 15 14 18 18 C 1.53068 * 116.67784 * 183.73371 * 16 15 14 19 19 N 1.48657 * 103.44121 * 155.89269 * 18 16 15 20 20 C 1.36938 * 125.78450 * 155.60299 * 19 18 16 21 21 H 1.08002 * 120.00063 * 7.13218 * 20 19 18 22 22 C 1.38814 * 120.00312 * 187.13880 * 20 19 18 23 23 N 1.31622 * 119.99610 * 353.51290 * 22 20 19 24 24 Si 1.86797 * 120.00181 * 173.51970 * 22 20 19 25 25 H 1.48493 * 109.47577 * 94.97859 * 24 22 20 26 26 H 1.48501 * 109.46917 * 214.98193 * 24 22 20 27 27 H 1.48505 * 109.46888 * 334.97658 * 24 22 20 28 28 C 1.48909 * 108.52504 * 335.22661 * 19 18 16 29 29 C 1.52327 * 105.53562 * 357.43214 * 28 19 18 30 30 H 1.09000 * 109.88591 * 271.57631 * 29 28 19 31 31 C 1.51440 * 117.45121 * 145.04512 * 29 28 19 32 32 H 1.08995 * 109.47294 * 60.00385 * 1 2 3 33 33 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47287 * 300.00013 * 1 2 3 35 35 H 1.08998 * 109.47287 * 239.99987 * 2 1 3 36 36 H 1.09003 * 109.47053 * 119.99899 * 2 1 3 37 37 H 1.07995 * 118.95161 * 179.70310 * 5 4 3 38 38 H 1.08002 * 120.53293 * 180.02562 * 7 6 5 39 39 H 0.97002 * 119.99779 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.03049 * 305.96460 * 14 12 11 41 41 H 1.09000 * 109.03438 * 64.82210 * 14 12 11 42 42 H 1.09006 * 109.94183 * 298.15886 * 15 14 12 43 43 H 1.09000 * 109.94324 * 176.91570 * 15 14 12 44 44 H 1.08996 * 110.62693 * 274.38623 * 18 16 15 45 45 H 1.08997 * 110.62535 * 37.41165 * 18 16 15 46 46 H 0.97002 * 119.99559 * 180.02562 * 23 22 20 47 47 H 1.09003 * 110.55254 * 238.32151 * 28 19 18 48 48 H 1.09001 * 110.10869 * 116.31220 * 28 19 18 49 49 H 1.08994 * 109.93760 * 61.33997 * 31 29 28 50 50 H 1.08998 * 109.93768 * 300.10949 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3875 2.0075 1.1297 5 6 2.8229 3.2521 1.1402 6 7 2.9312 3.9659 0.0365 7 6 2.6033 3.4563 -1.1377 8 6 2.1357 2.1383 -1.1969 9 6 1.7560 1.5239 -2.4867 10 8 1.4179 0.3570 -2.5278 11 7 1.7795 2.2588 -3.6161 12 6 1.4038 1.6497 -4.8944 13 1 0.5954 0.9384 -4.7252 14 6 2.6075 0.9063 -5.4644 15 6 2.3211 0.3542 -6.8711 16 6 1.9299 1.5337 -7.7398 17 1 2.7030 2.3015 -7.7116 18 6 1.5092 1.2188 -9.1774 19 7 0.6546 2.3771 -9.5489 20 6 0.4169 2.8209 -10.8224 21 1 0.7725 2.2511 -11.6681 22 6 -0.2811 4.0034 -11.0264 23 7 -0.8245 4.6313 -10.0052 24 14 -0.4493 4.7032 -12.7501 25 1 -1.7353 4.2560 -13.3427 26 1 -0.4228 6.1866 -12.6868 27 1 0.6767 4.2234 -13.5912 28 6 0.0924 2.9689 -8.3036 29 6 0.5896 2.0817 -7.1696 30 1 -0.1084 1.2603 -7.0081 31 6 0.9117 2.7506 -5.8496 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.0999 3.7011 2.0825 38 1 2.6951 4.0470 -2.0372 39 1 2.0452 3.1911 -3.5826 40 1 3.4551 1.5896 -5.5165 41 1 2.8602 0.0783 -4.8022 42 1 1.5023 -0.3642 -6.8290 43 1 3.2152 -0.1228 -7.2725 44 1 2.3812 1.1604 -9.8287 45 1 0.9372 0.2918 -9.2158 46 1 -1.3126 5.4574 -10.1478 47 1 -0.9972 2.9632 -8.3352 48 1 0.4599 3.9868 -8.1733 49 1 0.0167 3.2222 -5.4438 50 1 1.6939 3.4962 -5.9919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980241564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:31 Heat of formation + Delta-G solvation = 30.903343 kcal Electronic energy + Delta-G solvation = -30347.292070 eV Core-core repulsion = 26374.815500 eV Total energy + Delta-G solvation = -3972.476570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75096 -40.09414 -38.83616 -36.08550 -35.15500 -33.83918 -33.21177 -31.80327 -31.31121 -30.72418 -28.60167 -26.47086 -25.72213 -25.33703 -24.78728 -22.35037 -22.01576 -21.66751 -20.55319 -19.88786 -19.45361 -18.27284 -17.95891 -17.24313 -16.71215 -15.99786 -15.67664 -15.06826 -14.75869 -14.65879 -14.48640 -14.27983 -14.23456 -14.13615 -14.02633 -13.58465 -13.40305 -12.82814 -12.53351 -12.31570 -12.15136 -12.05093 -11.87309 -11.83431 -11.63845 -11.31637 -11.19382 -11.07844 -11.02201 -10.82461 -10.69811 -10.56144 -10.15265 -10.05791 -9.97295 -9.91773 -9.79755 -9.70300 -9.53889 -9.52981 -9.05991 -8.58072 -6.81429 -5.71767 -3.03027 0.02526 0.58347 2.53761 2.80106 3.37657 3.40032 3.45794 3.47554 3.57536 3.61396 3.90499 4.28098 4.44557 4.49787 4.73906 4.84505 4.85225 4.94688 5.09078 5.11127 5.16161 5.25877 5.35392 5.42607 5.48848 5.57532 5.61454 5.65405 5.71851 5.74181 5.79949 5.92165 5.97683 6.04367 6.14127 6.17636 6.21906 6.24796 6.36309 6.38235 6.44486 6.47169 6.52324 6.65400 6.81448 7.03817 7.21087 7.53844 7.56992 7.62431 7.81558 7.90313 8.22273 9.19997 9.81563 10.50321 11.41113 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.002206 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.513340 B =12689.464081 C =13263.233716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C 0.239 3.761 4 N -0.525 5.525 5 C 0.316 3.684 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.244 4.244 9 C 0.568 3.432 10 O -0.521 6.521 11 N -0.717 5.717 12 C 0.149 3.851 13 H 0.088 0.912 14 C -0.124 4.124 15 C -0.100 4.100 16 C -0.107 4.107 17 H 0.074 0.926 18 C 0.142 3.858 19 N -0.611 5.611 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.191 3.809 29 C -0.114 4.114 30 H 0.065 0.935 31 C -0.106 4.106 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.201 0.799 38 H 0.172 0.828 39 H 0.398 0.602 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.020 0.980 46 H 0.251 0.749 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.069 0.931 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -5.435 21.607 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C 0.093 3.907 4 N -0.238 5.238 5 C 0.030 3.970 6 N -0.241 5.241 7 C 0.018 3.982 8 C -0.251 4.251 9 C 0.353 3.647 10 O -0.398 6.398 11 N -0.367 5.367 12 C 0.046 3.954 13 H 0.106 0.894 14 C -0.162 4.162 15 C -0.138 4.138 16 C -0.126 4.126 17 H 0.092 0.908 18 C 0.016 3.984 19 N -0.338 5.338 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.739 3.261 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.067 3.933 29 C -0.134 4.134 30 H 0.083 0.917 31 C -0.144 4.144 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.218 0.782 38 H 0.189 0.811 39 H 0.233 0.767 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.235 -5.667 22.335 24.152 hybrid contribution -0.163 0.807 -1.583 1.784 sum 7.073 -4.859 20.752 22.456 Atomic orbital electron populations 1.21557 0.93126 1.02690 1.01688 1.20963 0.97408 0.88971 1.05408 1.22068 0.85630 0.96622 0.86402 1.68432 1.13540 1.12273 1.29595 1.25258 0.88312 0.86310 0.97166 1.68464 1.17907 1.38506 0.99190 1.23512 0.87151 0.90861 0.96657 1.21678 1.09022 0.97765 0.96646 1.17727 0.77865 0.86180 0.82920 1.90722 1.47278 1.15779 1.86063 1.46126 1.68540 1.14547 1.07490 1.21225 0.97503 0.95689 0.81020 0.89410 1.21875 0.97562 0.99798 0.96985 1.21292 1.01333 0.97668 0.93554 1.22099 0.97297 0.97323 0.95875 0.90766 1.21301 0.93572 0.91103 0.92418 1.45259 1.53824 1.32149 1.02540 1.19066 1.30529 1.03233 0.82510 0.90566 1.24808 1.00696 0.97596 0.97409 1.69961 1.39545 1.18950 1.28443 0.86153 0.77713 0.78421 0.83828 1.21762 1.21693 1.20688 1.20884 0.96949 0.93890 0.81613 1.22058 0.97070 0.99899 0.94392 0.91698 1.21521 1.01177 0.96677 0.95023 0.92144 0.91411 0.93189 0.86255 0.90161 0.78209 0.81107 0.76746 0.92145 0.91879 0.91684 0.91879 0.94225 0.96231 0.93862 0.93784 0.93707 0.91270 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.58 37.16 0.36 -0.87 16 2 C -0.09 -0.86 5.50 -27.88 -0.15 -1.01 16 3 C 0.24 2.46 6.12 -81.82 -0.50 1.96 16 4 N -0.52 -5.22 10.36 -10.48 -0.11 -5.33 16 5 C 0.32 2.66 12.27 -92.02 -1.13 1.53 16 6 N -0.53 -4.82 10.42 -14.24 -0.15 -4.97 16 7 C 0.19 1.55 10.80 -16.77 -0.18 1.37 16 8 C -0.24 -2.38 5.91 -104.69 -0.62 -3.00 16 9 C 0.57 6.14 7.58 -12.34 -0.09 6.04 16 10 O -0.52 -6.80 11.95 5.32 0.06 -6.73 16 11 N -0.72 -6.91 5.02 -54.57 -0.27 -7.18 16 12 C 0.15 1.74 2.42 -67.74 -0.16 1.58 16 13 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 14 C -0.12 -1.45 5.34 -26.55 -0.14 -1.59 16 15 C -0.10 -1.30 5.71 -27.01 -0.15 -1.46 16 16 C -0.11 -1.74 2.51 -89.89 -0.23 -1.96 16 17 H 0.07 1.25 8.01 -51.93 -0.42 0.84 16 18 C 0.14 2.85 6.90 -2.82 -0.02 2.83 16 19 N -0.61 -15.34 3.46 -169.85 -0.59 -15.93 16 20 C -0.22 -6.24 10.29 -15.06 -0.15 -6.39 16 21 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -26.70 10.42 55.49 0.58 -26.13 16 24 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.19 4.42 5.11 -3.05 -0.02 4.41 16 29 C -0.11 -1.96 2.28 -90.36 -0.21 -2.16 16 30 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 31 C -0.11 -1.41 5.15 -27.08 -0.14 -1.55 16 32 H 0.06 0.65 7.18 -51.93 -0.37 0.27 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.12 1.28 5.69 -51.93 -0.30 0.98 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.20 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.17 0.93 6.56 -52.49 -0.34 0.59 16 39 H 0.40 2.88 6.74 -40.82 -0.28 2.61 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 42 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 47 H 0.04 1.15 7.58 -51.93 -0.39 0.75 16 48 H 0.04 1.14 7.39 -51.93 -0.38 0.76 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -32.16 389.55 -11.16 -43.31 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.89 Total: 0.75 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -3.64 Total: -0.62 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.54 Total: -59.54 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.06 Total: -6.73 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.16 -11.16 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980241564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.217 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds