Wall clock time and date at job start Wed Apr 1 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46694 * 2 1 4 4 N 1.32159 * 120.53904 * 97.03661 * 3 2 1 5 5 C 1.31860 * 120.96950 * 180.28263 * 4 3 2 6 6 N 1.31885 * 122.09231 * 359.68093 * 5 4 3 7 7 C 1.32136 * 120.96588 * 0.02562 * 6 5 4 8 8 C 1.39926 * 120.53541 * 276.74512 * 3 2 1 9 9 C 1.47829 * 120.94318 * 0.03005 * 8 3 2 10 10 O 1.21552 * 119.99705 * 355.91764 * 9 8 3 11 11 N 1.34770 * 120.00480 * 175.64586 * 9 8 3 12 12 C 1.46498 * 120.00281 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.03136 * 36.04501 * 12 11 9 14 14 C 1.52526 * 109.04447 * 277.15606 * 12 11 9 15 15 C 1.53812 * 111.70264 * 185.39425 * 14 12 11 16 16 C 1.51620 * 107.02233 * 57.53526 * 15 14 12 17 17 H 1.08996 * 110.50089 * 55.20244 * 16 15 14 18 18 C 1.53068 * 116.67784 * 183.73371 * 16 15 14 19 19 N 1.48657 * 103.44121 * 155.89269 * 18 16 15 20 20 C 1.36938 * 125.78450 * 155.60299 * 19 18 16 21 21 H 1.08002 * 120.00063 * 7.13218 * 20 19 18 22 22 C 1.38814 * 120.00312 * 187.13880 * 20 19 18 23 23 N 1.31622 * 119.99610 * 353.51290 * 22 20 19 24 24 Si 1.86797 * 120.00181 * 173.51970 * 22 20 19 25 25 H 1.48493 * 109.47577 * 94.97859 * 24 22 20 26 26 H 1.48501 * 109.46917 * 214.98193 * 24 22 20 27 27 H 1.48505 * 109.46888 * 334.97658 * 24 22 20 28 28 C 1.48909 * 108.52504 * 335.22661 * 19 18 16 29 29 C 1.52327 * 105.53562 * 357.43214 * 28 19 18 30 30 H 1.09000 * 109.88591 * 271.57631 * 29 28 19 31 31 C 1.51440 * 117.45121 * 145.04512 * 29 28 19 32 32 H 1.08995 * 109.47294 * 60.00385 * 1 2 3 33 33 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47287 * 300.00013 * 1 2 3 35 35 H 1.08998 * 109.47287 * 239.99987 * 2 1 3 36 36 H 1.09003 * 109.47053 * 119.99899 * 2 1 3 37 37 H 1.07995 * 118.95161 * 179.70310 * 5 4 3 38 38 H 1.08002 * 120.53293 * 180.02562 * 7 6 5 39 39 H 0.97002 * 119.99779 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.03049 * 305.96460 * 14 12 11 41 41 H 1.09000 * 109.03438 * 64.82210 * 14 12 11 42 42 H 1.09006 * 109.94183 * 298.15886 * 15 14 12 43 43 H 1.09000 * 109.94324 * 176.91570 * 15 14 12 44 44 H 1.08996 * 110.62693 * 274.38623 * 18 16 15 45 45 H 1.08997 * 110.62535 * 37.41165 * 18 16 15 46 46 H 0.97002 * 119.99559 * 180.02562 * 23 22 20 47 47 H 1.09003 * 110.55254 * 238.32151 * 28 19 18 48 48 H 1.09001 * 110.10869 * 116.31220 * 28 19 18 49 49 H 1.08994 * 109.93760 * 61.33997 * 31 29 28 50 50 H 1.08998 * 109.93768 * 300.10949 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3875 2.0075 1.1297 5 6 2.8229 3.2521 1.1402 6 7 2.9312 3.9659 0.0365 7 6 2.6033 3.4563 -1.1377 8 6 2.1357 2.1383 -1.1969 9 6 1.7560 1.5239 -2.4867 10 8 1.4179 0.3570 -2.5278 11 7 1.7795 2.2588 -3.6161 12 6 1.4038 1.6497 -4.8944 13 1 0.5954 0.9384 -4.7252 14 6 2.6075 0.9063 -5.4644 15 6 2.3211 0.3542 -6.8711 16 6 1.9299 1.5337 -7.7398 17 1 2.7030 2.3015 -7.7116 18 6 1.5092 1.2188 -9.1774 19 7 0.6546 2.3771 -9.5489 20 6 0.4169 2.8209 -10.8224 21 1 0.7725 2.2511 -11.6681 22 6 -0.2811 4.0034 -11.0264 23 7 -0.8245 4.6313 -10.0052 24 14 -0.4493 4.7032 -12.7501 25 1 -1.7353 4.2560 -13.3427 26 1 -0.4228 6.1866 -12.6868 27 1 0.6767 4.2234 -13.5912 28 6 0.0924 2.9689 -8.3036 29 6 0.5896 2.0817 -7.1696 30 1 -0.1084 1.2603 -7.0081 31 6 0.9117 2.7506 -5.8496 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.0999 3.7011 2.0825 38 1 2.6951 4.0470 -2.0372 39 1 2.0452 3.1911 -3.5826 40 1 3.4551 1.5896 -5.5165 41 1 2.8602 0.0783 -4.8022 42 1 1.5023 -0.3642 -6.8290 43 1 3.2152 -0.1228 -7.2725 44 1 2.3812 1.1604 -9.8287 45 1 0.9372 0.2918 -9.2158 46 1 -1.3126 5.4574 -10.1478 47 1 -0.9972 2.9632 -8.3352 48 1 0.4599 3.9868 -8.1733 49 1 0.0167 3.2222 -5.4438 50 1 1.6939 3.4962 -5.9919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980241564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:29 Heat of formation + Delta-G solvation = 11.976014 kcal Electronic energy + Delta-G solvation = -30348.112821 eV Core-core repulsion = 26374.815500 eV Total energy + Delta-G solvation = -3973.297320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.46027 -41.14045 -39.98356 -37.24883 -36.08431 -35.04360 -34.12115 -33.29783 -32.40480 -31.85328 -30.09126 -27.90195 -27.00354 -26.08294 -26.02168 -23.56521 -23.00360 -22.61582 -21.63742 -21.36144 -20.82309 -19.05466 -18.86128 -18.58522 -17.88762 -16.96986 -16.73701 -16.41776 -15.96135 -15.71793 -15.64379 -15.53151 -15.20959 -15.15302 -14.92934 -14.90540 -14.31433 -14.06371 -13.66213 -13.52980 -13.42920 -13.39630 -13.18232 -12.85673 -12.77727 -12.72480 -12.55794 -12.53427 -12.13395 -12.08444 -11.87839 -11.78523 -11.72387 -11.69988 -11.46248 -11.17229 -10.84021 -10.75665 -10.68219 -10.61640 -10.38955 -10.03458 -8.85841 -7.84065 -5.17143 -0.65919 -0.10005 1.46350 1.47313 1.56822 1.75122 1.96071 2.50685 2.68330 2.92357 3.03777 3.25502 3.34297 3.53755 3.61096 3.65425 3.69929 3.76761 3.97445 4.14061 4.21391 4.25970 4.38497 4.41820 4.46183 4.46982 4.50789 4.57065 4.69581 4.74122 4.76611 4.82963 4.99588 5.01210 5.05424 5.10445 5.13297 5.16634 5.19885 5.21582 5.26687 5.33878 5.41115 5.48717 5.51383 5.63615 5.73278 5.79752 5.84509 6.19678 6.43723 6.90874 7.10353 7.11110 7.77251 8.45923 9.27335 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.002206 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.513340 B =12689.464081 C =13263.233716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C 0.228 3.772 4 N -0.539 5.539 5 C 0.316 3.684 6 N -0.539 5.539 7 C 0.191 3.809 8 C -0.254 4.254 9 C 0.571 3.429 10 O -0.545 6.545 11 N -0.707 5.707 12 C 0.161 3.839 13 H 0.075 0.925 14 C -0.116 4.116 15 C -0.092 4.092 16 C -0.090 4.090 17 H 0.073 0.927 18 C 0.134 3.866 19 N -0.636 5.636 20 C -0.240 4.240 21 H 0.079 0.921 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.974 3.026 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.269 1.269 28 C 0.200 3.800 29 C -0.104 4.104 30 H 0.064 0.936 31 C -0.096 4.096 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.199 0.801 39 H 0.411 0.589 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.024 0.976 46 H 0.246 0.754 47 H 0.002 0.998 48 H 0.015 0.985 49 H 0.070 0.930 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.957 -5.549 22.756 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 C 0.082 3.918 4 N -0.253 5.253 5 C 0.031 3.969 6 N -0.253 5.253 7 C 0.024 3.976 8 C -0.261 4.261 9 C 0.357 3.643 10 O -0.424 6.424 11 N -0.358 5.358 12 C 0.057 3.943 13 H 0.093 0.907 14 C -0.155 4.155 15 C -0.130 4.130 16 C -0.109 4.109 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.363 5.363 20 C -0.369 4.369 21 H 0.096 0.904 22 C -0.259 4.259 23 N -0.598 5.598 24 Si 0.803 3.197 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.194 1.194 28 C 0.076 3.924 29 C -0.124 4.124 30 H 0.082 0.918 31 C -0.134 4.134 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.248 0.752 38 H 0.216 0.784 39 H 0.249 0.751 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.020 0.980 48 H 0.034 0.966 49 H 0.089 0.911 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.896 -5.794 23.495 25.782 hybrid contribution -0.687 0.825 -1.940 2.217 sum 8.210 -4.969 21.555 23.594 Atomic orbital electron populations 1.21500 0.93036 1.03045 1.00903 1.20907 0.97420 0.88964 1.05184 1.22211 0.85761 0.96946 0.86906 1.68483 1.14304 1.13074 1.29463 1.25926 0.86978 0.85805 0.98239 1.68567 1.18424 1.38683 0.99581 1.23952 0.85693 0.90408 0.97511 1.21576 1.10231 0.98463 0.95850 1.17839 0.77317 0.85857 0.83301 1.90719 1.48391 1.16918 1.86415 1.45907 1.68222 1.15180 1.06472 1.20914 0.97311 0.94655 0.81426 0.90718 1.21801 0.97700 1.00077 0.95894 1.21241 1.02058 0.96148 0.93558 1.21977 0.96485 0.98705 0.93726 0.90819 1.21509 0.92964 0.89551 0.94957 1.45640 1.54806 1.33466 1.02351 1.19444 1.30030 1.03462 0.84000 0.90357 1.25625 1.00965 0.98194 1.01150 1.70175 1.40334 1.18999 1.30256 0.85127 0.77789 0.77200 0.79626 1.21666 1.21950 1.19390 1.20612 0.94434 0.93817 0.83584 1.21850 0.97388 0.98753 0.94363 0.91794 1.21406 1.01704 0.97142 0.93187 0.93821 0.90537 0.92903 0.87401 0.89352 0.75167 0.78402 0.75127 0.90882 0.91539 0.91741 0.90124 0.93888 0.95829 0.94485 0.97951 0.96640 0.91116 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.58 71.98 0.69 -1.58 16 2 C -0.09 -1.60 5.50 29.85 0.16 -1.44 16 3 C 0.23 4.42 6.12 42.92 0.26 4.68 16 4 N -0.54 -9.88 10.36 -187.07 -1.94 -11.82 16 5 C 0.32 4.63 12.27 180.84 2.22 6.85 16 6 N -0.54 -8.60 10.42 -198.97 -2.07 -10.67 16 7 C 0.19 2.76 10.80 85.07 0.92 3.68 16 8 C -0.25 -4.54 5.91 -19.91 -0.12 -4.66 16 9 C 0.57 11.43 7.58 86.78 0.66 12.09 16 10 O -0.55 -13.69 11.95 -3.88 -0.05 -13.74 16 11 N -0.71 -12.03 5.02 -444.84 -2.23 -14.26 16 12 C 0.16 3.45 2.42 45.12 0.11 3.56 16 13 H 0.07 1.87 7.58 -2.39 -0.02 1.85 16 14 C -0.12 -2.39 5.34 30.71 0.16 -2.23 16 15 C -0.09 -2.15 5.71 30.42 0.17 -1.98 16 16 C -0.09 -2.80 2.51 -10.32 -0.03 -2.83 16 17 H 0.07 2.35 8.01 -2.39 -0.02 2.33 16 18 C 0.13 5.36 6.90 85.99 0.59 5.95 16 19 N -0.64 -32.61 3.46 -691.30 -2.40 -35.00 16 20 C -0.24 -13.56 10.29 84.03 0.86 -12.69 16 21 H 0.08 4.25 7.84 -2.91 -0.02 4.23 16 22 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 23 N -0.95 -56.86 10.42 21.65 0.23 -56.64 16 24 Si 0.97 45.87 29.56 68.60 2.03 47.90 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 C 0.20 9.61 5.11 85.69 0.44 10.04 16 29 C -0.10 -3.53 2.28 -10.62 -0.02 -3.55 16 30 H 0.06 2.20 7.92 -2.39 -0.02 2.18 16 31 C -0.10 -2.44 5.15 30.37 0.16 -2.28 16 32 H 0.04 0.92 7.18 -2.39 -0.02 0.90 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 2.26 5.69 -2.39 -0.01 2.25 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.23 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.20 1.53 6.56 -2.91 -0.02 1.51 16 39 H 0.41 4.77 6.74 -92.71 -0.63 4.14 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 42 H 0.06 1.56 7.98 -2.38 -0.02 1.54 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 48 H 0.02 0.82 7.39 -2.39 -0.02 0.80 16 49 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.08 1.89 8.03 -2.39 -0.02 1.87 16 Total: -1.00 -71.70 389.55 1.60 -70.10 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.32 Total: 13.85 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 7.71 Total: 10.28 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -8.41 Total: -128.39 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.05 Total: -13.74 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.70 1.60 -70.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980241564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.071 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds