Wall clock time and date at job start Wed Apr 1 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31876 * 118.95052 * 2 1 4 4 C 1.32136 * 120.96758 * 179.97438 * 3 2 1 5 5 C 1.39974 * 118.92160 * 0.02562 * 4 3 2 6 6 C 1.47834 * 120.93949 * 179.97438 * 5 4 3 7 7 O 1.21546 * 119.99569 * 174.43893 * 6 5 4 8 8 N 1.34773 * 119.99710 * 354.44187 * 6 5 4 9 9 C 1.46500 * 119.99707 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46872 * 324.99707 * 9 8 6 11 11 C 1.53001 * 109.47566 * 84.99376 * 9 8 6 12 12 C 1.53007 * 109.46599 * 60.00199 * 11 9 8 13 13 C 1.52996 * 109.47053 * 60.00013 * 12 11 9 14 14 C 1.53000 * 109.47559 * 299.99853 * 13 12 11 15 15 H 1.09002 * 109.47098 * 300.00327 * 14 13 12 16 16 N 1.46497 * 109.47489 * 180.02562 * 14 13 12 17 17 C 1.36943 * 119.99822 * 85.00030 * 16 14 13 18 18 H 1.08000 * 119.99713 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99664 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00185 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99992 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47018 * 59.99638 * 21 19 17 23 23 H 1.48495 * 109.47435 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46919 * 299.99996 * 21 19 17 25 25 C 1.52996 * 109.47108 * 204.99988 * 9 8 6 26 26 C 1.39926 * 118.12036 * 359.97438 * 5 4 3 27 27 C 1.50702 * 120.53929 * 180.02562 * 26 5 4 28 28 C 1.52999 * 117.49947 * 179.90887 * 27 26 5 29 29 C 1.52996 * 117.49876 * 111.24805 * 27 26 5 30 30 N 1.31849 * 118.95092 * 179.73280 * 2 1 3 31 31 H 1.09006 * 109.47146 * 89.99995 * 1 2 3 32 32 H 1.08997 * 109.47242 * 209.99877 * 1 2 3 33 33 H 1.08995 * 109.47497 * 330.00439 * 1 2 3 34 34 H 1.07996 * 120.54322 * 180.02562 * 4 3 2 35 35 H 0.96998 * 120.00557 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.47594 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47299 * 300.00712 * 11 9 8 38 38 H 1.08997 * 109.46965 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47022 * 300.00042 * 12 11 9 40 40 H 1.09002 * 109.47183 * 60.00128 * 13 12 11 41 41 H 1.09002 * 109.47025 * 179.97438 * 13 12 11 42 42 H 0.97001 * 120.00141 * 265.00054 * 16 14 13 43 43 H 0.96995 * 119.99769 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.47499 * 59.99796 * 25 9 8 45 45 H 1.09002 * 109.47183 * 179.97438 * 25 9 8 46 46 H 1.09004 * 115.54383 * 325.57646 * 27 26 5 47 47 H 1.09001 * 117.49982 * 359.97438 * 28 27 26 48 48 H 1.09003 * 117.49857 * 145.01775 * 28 27 26 49 49 H 1.09005 * 117.49313 * 214.98136 * 29 27 26 50 50 H 1.09002 * 117.50247 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0005 5 6 4.1855 -0.0001 0.0005 6 6 5.6639 -0.0001 0.0005 7 8 6.2715 -1.0479 0.1025 8 7 6.3377 1.1616 -0.1126 9 6 7.8027 1.1615 -0.1131 10 1 8.1662 0.3806 0.5548 11 6 8.3123 0.8973 -1.5314 12 6 7.8019 1.9935 -2.4690 13 6 8.3122 3.3536 -1.9888 14 6 7.8027 3.6178 -0.5705 15 1 6.7127 3.6178 -0.5701 16 7 8.2908 4.9203 -0.1109 17 6 7.6026 6.0606 -0.4294 18 1 6.6998 5.9995 -1.0190 19 6 8.0654 7.2949 0.0057 20 7 9.1654 7.3692 0.7247 21 14 7.1262 8.8503 -0.4281 22 1 5.7502 8.7680 0.1243 23 1 7.8223 10.0269 0.1518 24 1 7.0591 8.9924 -1.9048 25 6 8.3130 2.5216 0.3671 26 6 3.4661 -1.2003 0.0005 27 6 4.1857 -2.5244 0.0011 28 6 3.3305 -3.7931 0.0032 29 6 4.0903 -3.3796 1.2661 30 7 2.1452 -1.1537 0.0054 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 3.9817 2.1493 0.0009 35 1 5.8528 1.9976 -0.1943 36 1 9.4022 0.8977 -1.5319 37 1 7.9487 -0.0716 -1.8735 38 1 8.1645 1.8051 -3.4795 39 1 6.7119 1.9936 -2.4686 40 1 9.4022 3.3536 -1.9892 41 1 7.9490 4.1345 -2.6570 42 1 9.1015 4.9751 0.4190 43 1 9.4889 8.2317 1.0283 44 1 7.9500 2.7097 1.3775 45 1 9.4030 2.5214 0.3671 46 1 5.1231 -2.5502 -0.5545 47 1 2.2475 -3.6701 0.0046 48 1 3.7056 -4.6538 -0.5507 49 1 4.9650 -3.9684 1.5425 50 1 3.5075 -2.9844 2.0981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981496282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:38 Heat of formation + Delta-G solvation = 38.894886 kcal Electronic energy + Delta-G solvation = -30496.494149 eV Core-core repulsion = 26524.364119 eV Total energy + Delta-G solvation = -3972.130031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67634 -39.96072 -38.09384 -37.35615 -34.59062 -33.99122 -33.33179 -32.88687 -31.20547 -30.03980 -28.80212 -27.88819 -25.64863 -24.18366 -23.72910 -22.55254 -22.23023 -21.48158 -21.20922 -20.97235 -18.98680 -18.05625 -17.92731 -17.08718 -16.62859 -15.85687 -15.63427 -15.44084 -15.21644 -14.84908 -14.52120 -14.44446 -14.15058 -13.78954 -13.65133 -13.46502 -13.08911 -12.94116 -12.79137 -12.51052 -12.24627 -12.12898 -11.93392 -11.86359 -11.77925 -11.73046 -11.54392 -11.04307 -10.90732 -10.83904 -10.76271 -10.44663 -10.40714 -10.25679 -10.23195 -9.80275 -9.70886 -9.60350 -9.57230 -9.53724 -9.01909 -8.89749 -7.02138 -5.81816 -3.11180 0.17534 0.72461 2.68477 3.01612 3.35962 3.40308 3.45262 3.45979 3.50961 3.67654 3.76759 4.06009 4.46113 4.52571 4.59455 4.76255 4.81861 4.83680 4.95203 5.00759 5.03470 5.11184 5.17965 5.20374 5.43690 5.47530 5.51698 5.52852 5.55354 5.63216 5.68096 5.69426 5.80430 5.90952 5.94260 5.99649 6.00215 6.05148 6.07343 6.18039 6.23261 6.42918 6.50459 6.56487 6.64904 6.65703 6.87679 7.02490 7.41661 7.63583 7.74726 8.08549 8.36469 9.47813 10.04598 10.38890 11.40557 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.002871 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.387391 B = 9751.227340 C =11339.622738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.338 3.662 3 N -0.524 5.524 4 C 0.192 3.808 5 C -0.246 4.246 6 C 0.570 3.430 7 O -0.529 6.529 8 N -0.710 5.710 9 C 0.153 3.847 10 H 0.087 0.913 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.137 4.137 14 C 0.181 3.819 15 H 0.039 0.961 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.135 4.135 26 C 0.267 3.733 27 C -0.118 4.118 28 C -0.165 4.165 29 C -0.147 4.147 30 N -0.523 5.523 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.149 0.851 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 -20.441 -1.942 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 N -0.238 5.238 4 C 0.024 3.976 5 C -0.253 4.253 6 C 0.356 3.644 7 O -0.407 6.407 8 N -0.362 5.362 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.166 4.166 12 C -0.154 4.154 13 C -0.178 4.178 14 C 0.071 3.929 15 H 0.057 0.943 16 N -0.364 5.364 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.173 4.173 26 C 0.121 3.879 27 C -0.136 4.136 28 C -0.202 4.202 29 C -0.185 4.185 30 N -0.238 5.238 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.191 0.809 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.166 0.834 47 H 0.124 0.876 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.529 -20.991 -1.892 24.519 hybrid contribution 0.579 1.681 -0.199 1.789 sum -11.949 -19.310 -2.090 22.805 Atomic orbital electron populations 1.20641 0.85281 1.04482 1.04206 1.23511 0.98451 0.83238 0.87553 1.68312 1.09669 1.30007 1.15812 1.23567 0.89691 0.97795 0.86511 1.21564 0.96340 0.95975 1.11457 1.17681 0.85678 0.84335 0.76754 1.90708 1.69319 1.30739 1.49933 1.46131 1.08074 1.08668 1.73345 1.21012 0.78133 0.98718 0.97275 0.89455 1.21901 1.00986 0.98800 0.94875 1.21512 1.00237 0.95558 0.98109 1.22295 1.00874 0.94914 0.99686 1.20134 0.96043 0.85808 0.90928 0.94305 1.42406 1.30463 1.00182 1.63381 1.19163 1.05415 0.85065 1.27611 0.91277 1.24737 0.97795 0.97635 1.00606 1.69646 1.23177 1.24262 1.40903 0.86301 0.79044 0.83144 0.77887 1.21220 1.21700 1.21271 1.22147 1.01875 0.93000 1.00320 1.20970 0.88377 0.93781 0.84805 1.21294 1.01042 0.86146 1.05145 1.23037 0.99552 0.96772 1.00813 1.22876 1.02756 1.01683 0.91209 1.68095 1.09035 1.30129 1.16509 0.89191 0.89405 0.89206 0.80860 0.76208 0.90960 0.92026 0.92781 0.92781 0.92463 0.92036 0.78213 0.93418 0.91128 0.90302 0.83408 0.87576 0.88396 0.87904 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.31 36.01 0.37 -0.27 16 2 C 0.34 3.79 7.64 -157.08 -1.20 2.59 16 3 N -0.52 -6.37 10.31 -10.39 -0.11 -6.48 16 4 C 0.19 2.22 10.80 -16.77 -0.18 2.04 16 5 C -0.25 -3.03 5.91 -104.69 -0.62 -3.64 16 6 C 0.57 7.40 7.72 -12.34 -0.10 7.31 16 7 O -0.53 -7.78 13.22 5.33 0.07 -7.71 16 8 N -0.71 -8.67 4.19 -54.76 -0.23 -8.90 16 9 C 0.15 1.96 2.78 -67.93 -0.19 1.77 16 10 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 11 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16 12 C -0.12 -1.54 5.77 -26.73 -0.15 -1.69 16 13 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 14 C 0.18 3.20 2.60 -67.93 -0.18 3.02 16 15 H 0.04 0.68 6.44 -51.93 -0.33 0.34 16 16 N -0.72 -16.93 5.12 -53.42 -0.27 -17.21 16 17 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 21 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.13 -1.99 5.08 -26.73 -0.14 -2.12 16 26 C 0.27 3.30 6.53 -81.81 -0.53 2.77 16 27 C -0.12 -1.32 4.76 -91.77 -0.44 -1.76 16 28 C -0.16 -1.49 10.05 -26.69 -0.27 -1.76 16 29 C -0.15 -1.43 10.24 -26.70 -0.27 -1.70 16 30 N -0.52 -6.19 9.34 -6.67 -0.06 -6.26 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.17 1.67 6.57 -52.49 -0.35 1.33 16 35 H 0.40 4.64 5.03 -40.82 -0.21 4.43 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.71 7.60 -51.93 -0.39 0.31 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.15 1.82 6.14 -51.93 -0.32 1.50 16 47 H 0.11 0.99 7.58 -51.93 -0.39 0.59 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -30.97 399.55 -11.06 -42.03 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.75 Total: 12.88 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -4.43 Total: -4.52 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.05 Total: -65.50 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.07 Total: -7.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.97 -11.06 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981496282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.923 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds