Wall clock time and date at job start Wed Apr 1 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31882 * 118.95105 * 2 1 4 4 C 1.32133 * 120.96478 * 179.97438 * 3 2 1 5 5 C 1.39967 * 118.92346 * 0.02562 * 4 3 2 6 6 C 1.47831 * 120.94036 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00045 * 174.15216 * 6 5 4 8 8 N 1.34773 * 120.00287 * 354.15474 * 6 5 4 9 9 C 1.46498 * 120.00349 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47044 * 325.00028 * 9 8 6 11 11 C 1.53001 * 109.46925 * 85.00129 * 9 8 6 12 12 C 1.52996 * 109.47097 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47232 * 299.99906 * 12 11 9 14 14 C 1.53001 * 109.47003 * 60.00037 * 13 12 11 15 15 H 1.09000 * 109.47342 * 60.00025 * 14 13 12 16 16 N 1.46500 * 109.47351 * 179.97438 * 14 13 12 17 17 C 1.36932 * 120.00147 * 275.00256 * 16 14 13 18 18 H 1.08001 * 119.99767 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00277 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99629 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46850 * 90.00510 * 21 19 17 23 23 H 1.48503 * 109.46965 * 209.99620 * 21 19 17 24 24 H 1.48498 * 109.47243 * 329.99854 * 21 19 17 25 25 C 1.53003 * 109.47368 * 300.00032 * 14 13 12 26 26 C 1.39930 * 118.12238 * 0.27119 * 5 4 3 27 27 C 1.50692 * 120.54069 * 179.70343 * 26 5 4 28 28 C 1.53007 * 117.50154 * 179.84628 * 27 26 5 29 29 C 1.53004 * 117.49870 * 111.18605 * 27 26 5 30 30 N 1.31849 * 118.95108 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46591 * 89.99485 * 1 2 3 32 32 H 1.08997 * 109.47589 * 210.00070 * 1 2 3 33 33 H 1.08998 * 109.46825 * 330.00279 * 1 2 3 34 34 H 1.08004 * 120.53718 * 180.02562 * 4 3 2 35 35 H 0.97004 * 119.99402 * 0.02562 * 8 6 5 36 36 H 1.08992 * 109.47039 * 300.00300 * 11 9 8 37 37 H 1.09000 * 109.47342 * 60.00082 * 11 9 8 38 38 H 1.09000 * 109.47007 * 59.99816 * 12 11 9 39 39 H 1.09002 * 109.47269 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.47146 * 300.00430 * 13 12 11 41 41 H 1.08996 * 109.47240 * 179.97438 * 13 12 11 42 42 H 0.97000 * 119.99885 * 94.99859 * 16 14 13 43 43 H 0.96998 * 119.99690 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46883 * 300.00274 * 25 14 13 45 45 H 1.08993 * 109.47327 * 179.97438 * 25 14 13 46 46 H 1.09000 * 115.55238 * 325.51618 * 27 26 5 47 47 H 1.09000 * 117.49433 * 0.02562 * 28 27 26 48 48 H 1.08997 * 117.50028 * 145.02045 * 28 27 26 49 49 H 1.09002 * 117.49901 * 214.97710 * 29 27 26 50 50 H 1.08994 * 117.50007 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1855 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0005 7 8 6.2716 -1.0474 0.1077 8 7 6.3378 1.1609 -0.1184 9 6 7.8028 1.1608 -0.1178 10 1 8.1659 0.3836 0.5546 11 6 8.3133 0.8891 -1.5343 12 6 9.8433 0.8885 -1.5337 13 6 10.3537 2.2510 -1.0602 14 6 9.8432 2.5227 0.3563 15 1 10.2059 1.7452 1.0286 16 7 10.3324 3.8269 0.8099 17 6 11.5737 3.9328 1.3782 18 1 12.1919 3.0546 1.4924 19 6 12.0375 5.1687 1.8076 20 7 11.2842 6.2390 1.6679 21 14 13.7306 5.3129 2.5834 22 1 14.7384 5.5801 1.5261 23 1 13.7328 6.4293 3.5627 24 1 14.0663 4.0442 3.2783 25 6 8.3132 2.5233 0.3557 26 6 3.4661 -1.2003 -0.0059 27 6 4.1856 -2.5243 -0.0129 28 6 3.3305 -3.7931 -0.0161 29 6 4.0919 -3.3860 1.2479 30 7 2.1453 -1.1537 -0.0005 31 1 -0.3632 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.9817 2.1494 0.0009 35 1 5.8528 1.9966 -0.2036 36 1 7.9500 -0.0816 -1.8714 37 1 7.9502 1.6664 -2.2068 38 1 10.2060 0.1110 -0.8614 39 1 10.2070 0.6954 -2.5429 40 1 9.9909 3.0285 -1.7325 41 1 11.4436 2.2503 -1.0593 42 1 9.7769 4.6156 0.7076 43 1 11.6084 7.1026 1.9676 44 1 7.9505 3.3008 -0.3166 45 1 7.9495 2.7164 1.3649 46 1 5.1223 -2.5474 -0.5698 47 1 2.2474 -3.6700 -0.0134 48 1 3.7048 -4.6509 -0.5747 49 1 4.9669 -3.9762 1.5203 50 1 3.5096 -2.9953 2.0823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981496283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:42 Heat of formation + Delta-G solvation = 35.966396 kcal Electronic energy + Delta-G solvation = -29819.907160 eV Core-core repulsion = 25847.650140 eV Total energy + Delta-G solvation = -3972.257019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76156 -39.85500 -38.08012 -37.43579 -34.81993 -34.06164 -33.45262 -33.13815 -31.16500 -29.96079 -28.77674 -27.76357 -25.72063 -24.26151 -23.71886 -22.59060 -22.19573 -21.58241 -21.30106 -20.49937 -19.56093 -18.13647 -17.97608 -17.00297 -16.70123 -16.01250 -15.92806 -15.39354 -15.12478 -14.88909 -14.43795 -14.32618 -14.14606 -13.84108 -13.69278 -13.53978 -13.21011 -13.03040 -12.88474 -12.73248 -12.27610 -12.19689 -12.10615 -11.96422 -11.78550 -11.62291 -11.02993 -10.99814 -10.89597 -10.83822 -10.76809 -10.49202 -10.39764 -10.27800 -10.20724 -10.00062 -9.74289 -9.66592 -9.64224 -9.58389 -9.07195 -8.89328 -6.98958 -5.79244 -3.07943 0.07766 0.62118 2.59889 2.89652 3.27875 3.41409 3.42158 3.47710 3.48987 3.56707 3.69750 3.97594 4.35529 4.50637 4.55498 4.67710 4.75319 4.78000 4.88341 4.94126 5.03519 5.09579 5.11383 5.26907 5.42445 5.44710 5.46632 5.47736 5.55761 5.63521 5.64390 5.68633 5.82363 5.89640 5.92543 5.93849 5.97407 6.01960 6.09536 6.23756 6.27352 6.45461 6.48485 6.54921 6.56655 6.68645 6.93019 7.08877 7.31567 7.64421 7.68681 8.00501 8.39471 9.50723 10.07601 10.42237 11.43460 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.002182 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.942436 B =12826.765360 C =13568.149463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.339 3.661 3 N -0.526 5.526 4 C 0.190 3.810 5 C -0.246 4.246 6 C 0.569 3.431 7 O -0.523 6.523 8 N -0.716 5.716 9 C 0.150 3.850 10 H 0.091 0.909 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.137 4.137 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.724 5.724 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.130 4.130 26 C 0.269 3.731 27 C -0.120 4.120 28 C -0.164 4.164 29 C -0.146 4.146 30 N -0.522 5.522 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.397 0.603 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.148 0.852 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.965 -15.848 -6.085 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 N -0.240 5.240 4 C 0.023 3.977 5 C -0.253 4.253 6 C 0.354 3.646 7 O -0.400 6.400 8 N -0.367 5.367 9 C 0.046 3.954 10 H 0.109 0.891 11 C -0.162 4.162 12 C -0.153 4.153 13 C -0.178 4.178 14 C 0.073 3.927 15 H 0.067 0.933 16 N -0.365 5.365 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.169 4.169 26 C 0.122 3.878 27 C -0.138 4.138 28 C -0.201 4.201 29 C -0.184 4.184 30 N -0.237 5.237 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.191 0.809 35 H 0.232 0.768 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.166 0.834 47 H 0.124 0.876 48 H 0.117 0.883 49 H 0.122 0.878 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.360 -16.586 -5.894 27.678 hybrid contribution 1.520 1.163 0.268 1.932 sum -19.840 -15.423 -5.626 25.752 Atomic orbital electron populations 1.20646 0.85236 1.04527 1.04221 1.23513 0.98459 0.83220 0.87508 1.68297 1.09635 1.30090 1.16009 1.23506 0.89693 0.97673 0.86878 1.21575 0.96324 0.96022 1.11402 1.17688 0.85645 0.84370 0.76856 1.90739 1.69265 1.30694 1.49287 1.46084 1.08188 1.08512 1.73867 1.21096 0.77139 0.99489 0.97666 0.89104 1.21883 0.96725 1.01423 0.96212 1.21483 0.94062 0.98922 1.00831 1.22300 1.01271 0.94886 0.99321 1.20089 0.89448 0.90048 0.93071 0.93323 1.42397 1.18013 1.03824 1.72218 1.19237 0.92666 0.93588 1.31347 0.91141 1.24740 0.98508 0.95658 1.02096 1.69657 1.36942 0.98571 1.53035 0.86204 0.84171 0.77140 0.78779 1.21736 1.21804 1.20744 1.22110 0.98542 0.94696 1.01580 1.20989 0.88350 0.93846 0.84567 1.21300 1.01077 0.86109 1.05362 1.23041 0.99500 0.96748 1.00833 1.22888 1.02793 1.01543 0.91196 1.68105 1.09055 1.30110 1.16392 0.89168 0.89342 0.89225 0.80942 0.76838 0.92132 0.92020 0.92117 0.92469 0.92642 0.91848 0.78335 0.93532 0.91626 0.91218 0.83418 0.87574 0.88337 0.87788 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.31 36.01 0.37 -0.17 16 2 C 0.34 3.38 7.64 -157.07 -1.20 2.18 16 3 N -0.53 -5.49 10.32 -10.39 -0.11 -5.60 16 4 C 0.19 1.83 10.80 -16.78 -0.18 1.65 16 5 C -0.25 -2.73 5.91 -104.69 -0.62 -3.35 16 6 C 0.57 6.96 7.71 -12.34 -0.10 6.87 16 7 O -0.52 -7.65 13.23 5.32 0.07 -7.58 16 8 N -0.72 -7.84 5.03 -54.75 -0.28 -8.12 16 9 C 0.15 1.95 2.45 -67.93 -0.17 1.78 16 10 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 11 C -0.12 -1.57 5.49 -26.73 -0.15 -1.71 16 12 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 13 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 14 C 0.18 3.44 2.77 -67.93 -0.19 3.25 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -17.44 5.12 -53.42 -0.27 -17.71 16 17 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.13 -1.95 4.86 -26.73 -0.13 -2.08 16 26 C 0.27 3.10 6.53 -81.82 -0.53 2.57 16 27 C -0.12 -1.30 4.75 -91.77 -0.44 -1.73 16 28 C -0.16 -1.43 10.05 -26.69 -0.27 -1.70 16 29 C -0.15 -1.39 10.24 -26.69 -0.27 -1.66 16 30 N -0.52 -5.71 9.34 -6.68 -0.06 -5.77 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.17 1.15 6.58 -52.48 -0.35 0.80 16 35 H 0.40 3.38 6.77 -40.82 -0.28 3.10 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.38 9.78 7.80 -40.82 -0.32 9.47 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.15 1.77 6.16 -51.93 -0.32 1.45 16 47 H 0.11 0.94 7.58 -51.93 -0.39 0.54 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -32.01 404.01 -11.21 -43.22 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.93 Total: 10.71 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -4.42 Total: -5.37 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: 0.01 Total: -64.22 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.07 Total: -7.58 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.01 -11.21 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981496283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.182 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds