Wall clock time and date at job start Wed Apr 1 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31882 * 118.95105 * 2 1 4 4 C 1.32133 * 120.96478 * 179.97438 * 3 2 1 5 5 C 1.39967 * 118.92346 * 0.02562 * 4 3 2 6 6 C 1.47831 * 120.94036 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00045 * 174.15216 * 6 5 4 8 8 N 1.34773 * 120.00287 * 354.15474 * 6 5 4 9 9 C 1.46498 * 120.00349 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47044 * 325.00028 * 9 8 6 11 11 C 1.53001 * 109.46925 * 85.00129 * 9 8 6 12 12 C 1.52996 * 109.47097 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47232 * 299.99906 * 12 11 9 14 14 C 1.53001 * 109.47003 * 60.00037 * 13 12 11 15 15 H 1.09000 * 109.47342 * 60.00025 * 14 13 12 16 16 N 1.46500 * 109.47351 * 179.97438 * 14 13 12 17 17 C 1.36932 * 120.00147 * 275.00256 * 16 14 13 18 18 H 1.08001 * 119.99767 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00277 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99629 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46850 * 90.00510 * 21 19 17 23 23 H 1.48503 * 109.46965 * 209.99620 * 21 19 17 24 24 H 1.48498 * 109.47243 * 329.99854 * 21 19 17 25 25 C 1.53003 * 109.47368 * 300.00032 * 14 13 12 26 26 C 1.39930 * 118.12238 * 0.27119 * 5 4 3 27 27 C 1.50692 * 120.54069 * 179.70343 * 26 5 4 28 28 C 1.53007 * 117.50154 * 179.84628 * 27 26 5 29 29 C 1.53004 * 117.49870 * 111.18605 * 27 26 5 30 30 N 1.31849 * 118.95108 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46591 * 89.99485 * 1 2 3 32 32 H 1.08997 * 109.47589 * 210.00070 * 1 2 3 33 33 H 1.08998 * 109.46825 * 330.00279 * 1 2 3 34 34 H 1.08004 * 120.53718 * 180.02562 * 4 3 2 35 35 H 0.97004 * 119.99402 * 0.02562 * 8 6 5 36 36 H 1.08992 * 109.47039 * 300.00300 * 11 9 8 37 37 H 1.09000 * 109.47342 * 60.00082 * 11 9 8 38 38 H 1.09000 * 109.47007 * 59.99816 * 12 11 9 39 39 H 1.09002 * 109.47269 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.47146 * 300.00430 * 13 12 11 41 41 H 1.08996 * 109.47240 * 179.97438 * 13 12 11 42 42 H 0.97000 * 119.99885 * 94.99859 * 16 14 13 43 43 H 0.96998 * 119.99690 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46883 * 300.00274 * 25 14 13 45 45 H 1.08993 * 109.47327 * 179.97438 * 25 14 13 46 46 H 1.09000 * 115.55238 * 325.51618 * 27 26 5 47 47 H 1.09000 * 117.49433 * 0.02562 * 28 27 26 48 48 H 1.08997 * 117.50028 * 145.02045 * 28 27 26 49 49 H 1.09002 * 117.49901 * 214.97710 * 29 27 26 50 50 H 1.08994 * 117.50007 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1855 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0005 7 8 6.2716 -1.0474 0.1077 8 7 6.3378 1.1609 -0.1184 9 6 7.8028 1.1608 -0.1178 10 1 8.1659 0.3836 0.5546 11 6 8.3133 0.8891 -1.5343 12 6 9.8433 0.8885 -1.5337 13 6 10.3537 2.2510 -1.0602 14 6 9.8432 2.5227 0.3563 15 1 10.2059 1.7452 1.0286 16 7 10.3324 3.8269 0.8099 17 6 11.5737 3.9328 1.3782 18 1 12.1919 3.0546 1.4924 19 6 12.0375 5.1687 1.8076 20 7 11.2842 6.2390 1.6679 21 14 13.7306 5.3129 2.5834 22 1 14.7384 5.5801 1.5261 23 1 13.7328 6.4293 3.5627 24 1 14.0663 4.0442 3.2783 25 6 8.3132 2.5233 0.3557 26 6 3.4661 -1.2003 -0.0059 27 6 4.1856 -2.5243 -0.0129 28 6 3.3305 -3.7931 -0.0161 29 6 4.0919 -3.3860 1.2479 30 7 2.1453 -1.1537 -0.0005 31 1 -0.3632 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.9817 2.1494 0.0009 35 1 5.8528 1.9966 -0.2036 36 1 7.9500 -0.0816 -1.8714 37 1 7.9502 1.6664 -2.2068 38 1 10.2060 0.1110 -0.8614 39 1 10.2070 0.6954 -2.5429 40 1 9.9909 3.0285 -1.7325 41 1 11.4436 2.2503 -1.0593 42 1 9.7769 4.6156 0.7076 43 1 11.6084 7.1026 1.9676 44 1 7.9505 3.3008 -0.3166 45 1 7.9495 2.7164 1.3649 46 1 5.1223 -2.5474 -0.5698 47 1 2.2474 -3.6700 -0.0134 48 1 3.7048 -4.6509 -0.5747 49 1 4.9669 -3.9762 1.5203 50 1 3.5096 -2.9953 2.0823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981496283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:41 Heat of formation + Delta-G solvation = 16.795586 kcal Electronic energy + Delta-G solvation = -29820.738468 eV Core-core repulsion = 25847.650140 eV Total energy + Delta-G solvation = -3973.088328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55294 -40.87469 -39.27183 -38.24815 -36.24982 -35.14410 -34.47587 -34.05376 -32.91416 -30.97593 -29.84737 -29.14734 -26.51236 -25.71341 -24.97637 -23.44762 -23.23416 -22.79428 -22.09122 -21.56708 -20.89472 -19.33306 -18.94135 -18.59030 -17.49601 -17.18861 -16.71560 -16.46822 -16.14457 -16.05343 -15.79406 -15.47602 -15.27123 -15.00081 -14.95357 -14.86213 -14.35844 -14.22757 -13.66293 -13.47922 -13.44011 -13.31923 -13.00640 -12.91287 -12.80802 -12.78378 -12.50876 -12.37143 -12.26774 -12.14606 -12.02766 -11.96860 -11.67086 -11.63759 -11.40168 -11.30847 -11.23966 -10.86664 -10.67260 -10.48951 -10.42165 -10.05478 -8.98959 -7.93534 -5.20923 -0.71530 -0.15673 1.47721 1.48325 1.56683 1.70238 1.93836 2.49731 2.56890 2.70362 2.86569 2.94487 3.23987 3.39920 3.52710 3.62951 3.72425 3.87531 3.97087 3.99402 4.04629 4.07573 4.17514 4.27857 4.32234 4.42940 4.53762 4.54631 4.59070 4.67816 4.68819 4.73542 4.77854 4.82677 4.85765 4.98159 5.02132 5.10428 5.15997 5.18230 5.23811 5.26970 5.31069 5.36605 5.44217 5.51564 5.54681 5.67029 5.77152 6.29442 6.41924 6.88015 7.08572 7.35857 8.12073 8.35256 9.29825 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.002182 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.942436 B =12826.765360 C =13568.149463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.538 5.538 4 C 0.196 3.804 5 C -0.260 4.260 6 C 0.572 3.428 7 O -0.550 6.550 8 N -0.706 5.706 9 C 0.162 3.838 10 H 0.075 0.925 11 C -0.116 4.116 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.177 3.823 15 H 0.037 0.963 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.072 0.928 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.967 3.033 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.272 1.272 25 C -0.116 4.116 26 C 0.258 3.742 27 C -0.137 4.137 28 C -0.147 4.147 29 C -0.146 4.146 30 N -0.531 5.531 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.201 0.799 35 H 0.411 0.589 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.134 0.866 47 H 0.106 0.894 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.237 -16.749 -6.779 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 N -0.253 5.253 4 C 0.028 3.972 5 C -0.267 4.267 6 C 0.358 3.642 7 O -0.429 6.429 8 N -0.357 5.357 9 C 0.057 3.943 10 H 0.093 0.907 11 C -0.155 4.155 12 C -0.144 4.144 13 C -0.168 4.168 14 C 0.069 3.931 15 H 0.055 0.945 16 N -0.375 5.375 17 C -0.367 4.367 18 H 0.090 0.910 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.797 3.203 22 H -0.215 1.215 23 H -0.223 1.223 24 H -0.197 1.197 25 C -0.155 4.155 26 C 0.112 3.888 27 C -0.155 4.155 28 C -0.184 4.184 29 C -0.184 4.184 30 N -0.246 5.246 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.217 0.783 35 H 0.248 0.752 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.152 0.848 47 H 0.124 0.876 48 H 0.132 0.868 49 H 0.128 0.872 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.657 -17.525 -6.606 29.395 hybrid contribution 1.846 1.376 0.468 2.350 sum -20.810 -16.148 -6.137 27.046 Atomic orbital electron populations 1.20793 0.82760 1.05467 1.05389 1.24262 1.00021 0.82902 0.86180 1.68412 1.09867 1.30292 1.16682 1.23939 0.89652 0.98216 0.85366 1.21482 0.95510 0.96663 1.13092 1.17819 0.86106 0.84046 0.76190 1.90731 1.69883 1.31690 1.50562 1.45863 1.07263 1.09041 1.73528 1.20797 0.78317 0.97508 0.97668 0.90688 1.21815 0.95710 1.02052 0.95901 1.21407 0.94849 0.96534 1.01658 1.22108 0.99796 0.96943 0.97920 1.20307 0.91987 0.87260 0.93595 0.94502 1.42577 1.17166 1.05417 1.72370 1.19573 0.93653 0.93489 1.29973 0.90972 1.25485 1.02008 0.95610 1.03686 1.69797 1.38558 0.98757 1.54815 0.85227 0.80237 0.77097 0.77761 1.21543 1.22302 1.19657 1.21893 0.95653 0.96288 1.01689 1.21187 0.88877 0.94266 0.84493 1.21253 1.01165 0.86862 1.06263 1.23086 0.99234 0.96067 0.99986 1.22918 1.03168 1.01299 0.91062 1.68178 1.08717 1.30612 1.17107 0.87683 0.88393 0.88256 0.78280 0.75208 0.91739 0.90819 0.92193 0.90684 0.92831 0.94095 0.79429 0.94115 0.90494 0.91907 0.84827 0.87566 0.86750 0.87247 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.31 71.24 0.73 -0.15 16 2 C 0.33 6.09 7.64 138.71 1.06 7.15 16 3 N -0.54 -10.32 10.32 -186.79 -1.93 -12.25 16 4 C 0.20 3.44 10.80 85.07 0.92 4.36 16 5 C -0.26 -5.53 5.91 -19.91 -0.12 -5.65 16 6 C 0.57 13.48 7.71 86.78 0.67 14.15 16 7 O -0.55 -15.92 13.23 -3.88 -0.05 -15.97 16 8 N -0.71 -14.34 5.03 -445.42 -2.24 -16.58 16 9 C 0.16 4.00 2.45 44.99 0.11 4.11 16 10 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 11 C -0.12 -2.70 5.49 30.59 0.17 -2.53 16 12 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 13 C -0.13 -4.24 5.50 30.60 0.17 -4.08 16 14 C 0.18 6.61 2.77 44.99 0.12 6.73 16 15 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 16 N -0.74 -35.77 5.12 -322.93 -1.65 -37.43 16 17 C -0.23 -12.83 9.93 84.04 0.83 -12.00 16 18 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 21 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 C -0.12 -3.37 4.86 30.60 0.15 -3.22 16 26 C 0.26 5.79 6.53 42.92 0.28 6.07 16 27 C -0.14 -2.91 4.75 -11.54 -0.05 -2.96 16 28 C -0.15 -2.39 10.05 30.62 0.31 -2.09 16 29 C -0.15 -2.70 10.24 30.62 0.31 -2.39 16 30 N -0.53 -11.04 9.34 -175.03 -1.63 -12.68 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.20 2.16 6.58 -2.91 -0.02 2.14 16 35 H 0.41 6.07 6.77 -92.71 -0.63 5.44 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.37 19.35 7.80 -92.71 -0.72 18.63 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.13 3.23 6.16 -2.39 -0.01 3.22 16 47 H 0.11 1.74 7.58 -2.39 -0.02 1.73 16 48 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -69.19 404.01 0.73 -68.46 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.39 Total: 35.44 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.31 Total: 1.14 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -7.17 Total: -137.05 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.05 Total: -15.97 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -69.19 0.73 -68.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981496283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.258 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds