Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31883 * 118.95195 * 2 1 4 4 C 1.32132 * 120.96714 * 180.02562 * 3 2 1 5 5 C 1.39967 * 118.92649 * 359.97438 * 4 3 2 6 6 C 1.47829 * 120.94386 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99975 * 174.42222 * 6 5 4 8 8 N 1.34774 * 119.99888 * 354.42645 * 6 5 4 9 9 C 1.46501 * 119.99995 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47226 * 34.99755 * 9 8 6 11 11 C 1.52997 * 109.46910 * 274.99722 * 9 8 6 12 12 C 1.53001 * 109.47075 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47115 * 59.99993 * 12 11 9 14 14 C 1.52997 * 109.47154 * 299.99958 * 13 12 11 15 15 H 1.09000 * 109.47573 * 300.00314 * 14 13 12 16 16 N 1.46498 * 109.47507 * 180.02562 * 14 13 12 17 17 C 1.36931 * 119.99950 * 84.99773 * 16 14 13 18 18 H 1.08001 * 120.00316 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99934 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47210 * 89.99462 * 21 19 17 23 23 H 1.48498 * 109.47309 * 209.99803 * 21 19 17 24 24 H 1.48499 * 109.46854 * 329.99791 * 21 19 17 25 25 C 1.53001 * 109.47075 * 60.00018 * 14 13 12 26 26 C 1.39937 * 118.11580 * 0.27116 * 5 4 3 27 27 C 1.50699 * 120.53585 * 179.72429 * 26 5 4 28 28 C 1.52992 * 117.50053 * 179.91109 * 27 26 5 29 29 C 1.52992 * 60.00302 * 252.51102 * 28 27 26 30 30 N 1.31858 * 118.95384 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47062 * 90.00259 * 1 2 3 32 32 H 1.09001 * 109.46532 * 210.00269 * 1 2 3 33 33 H 1.09002 * 109.46748 * 329.99799 * 1 2 3 34 34 H 1.08006 * 120.54066 * 180.02562 * 4 3 2 35 35 H 0.97001 * 120.00184 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47573 * 299.99659 * 11 9 8 37 37 H 1.08998 * 109.47361 * 60.00230 * 11 9 8 38 38 H 1.09007 * 109.47237 * 179.97438 * 12 11 9 39 39 H 1.08999 * 109.47180 * 300.00105 * 12 11 9 40 40 H 1.09003 * 109.47074 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.47005 * 60.00004 * 13 12 11 42 42 H 0.97007 * 119.99740 * 265.00288 * 16 14 13 43 43 H 0.97001 * 120.00051 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.47180 * 59.99895 * 25 14 13 45 45 H 1.09001 * 109.47473 * 180.02562 * 25 14 13 46 46 H 1.09007 * 115.55236 * 325.62229 * 27 26 5 47 47 H 1.08997 * 117.50236 * 0.02562 * 28 27 26 48 48 H 1.09007 * 117.50290 * 145.02053 * 28 27 26 49 49 H 1.09001 * 117.50313 * 252.50854 * 29 28 27 50 50 H 1.08998 * 117.51927 * 107.48076 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 -0.0005 5 6 4.1856 0.0000 -0.0005 6 6 5.6639 -0.0001 -0.0005 7 8 6.2716 -1.0478 0.1018 8 7 6.3378 1.1616 -0.1138 9 6 7.8028 1.1616 -0.1133 10 1 8.1663 0.2664 -0.6178 11 6 8.3121 1.1765 1.3293 12 6 9.8422 1.1758 1.3300 13 6 10.3530 2.4173 0.5959 14 6 9.8436 2.4025 -0.8467 15 1 10.2067 1.5070 -1.3511 16 7 10.3332 3.5908 -1.5497 17 6 11.5749 3.5819 -2.1268 18 1 12.1933 2.6986 -2.0640 19 6 12.0390 4.7081 -2.7925 20 7 11.2853 5.7843 -2.8696 21 14 13.7327 4.6957 -3.5804 22 1 13.6233 4.2173 -4.9819 23 1 14.2941 6.0705 -3.5691 24 1 14.6273 3.7894 -2.8165 25 6 8.3136 2.4031 -0.8473 26 6 3.4661 -1.2002 -0.0058 27 6 4.1856 -2.5243 -0.0123 28 6 3.3306 -3.7930 -0.0158 29 6 4.0906 -3.3862 1.2482 30 7 2.1453 -1.1538 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 3.9817 2.1494 -0.0001 35 1 5.8528 1.9977 -0.1958 36 1 7.9487 2.0717 1.8339 37 1 7.9487 0.2918 1.8522 38 1 10.2051 1.1869 2.3578 39 1 10.2053 0.2804 0.8256 40 1 11.4430 2.4166 0.5960 41 1 9.9898 3.3127 1.1003 42 1 9.7776 4.3841 -1.6064 43 1 11.6094 6.5712 -3.3351 44 1 7.9504 3.2985 -0.3429 45 1 7.9506 2.3921 -1.8751 46 1 5.1231 -2.5472 -0.5681 47 1 2.2476 -3.6701 -0.0137 48 1 3.7052 -4.6510 -0.5741 49 1 4.9652 -3.9764 1.5216 50 1 3.5079 -2.9954 2.0824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981496284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = 35.966623 kcal Electronic energy + Delta-G solvation = -29819.336756 eV Core-core repulsion = 25847.079746 eV Total energy + Delta-G solvation = -3972.257010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76162 -39.85486 -38.08132 -37.44100 -34.82088 -34.06148 -33.45395 -33.13805 -31.16355 -29.96082 -28.77697 -27.76025 -25.72300 -24.26142 -23.71850 -22.59342 -22.19359 -21.58166 -21.29949 -20.50045 -19.56282 -18.13202 -17.97283 -17.00227 -16.70987 -16.04348 -15.91430 -15.38405 -15.14303 -14.83039 -14.43426 -14.39067 -14.12487 -13.84005 -13.69665 -13.53184 -13.20447 -13.04724 -12.87044 -12.72635 -12.32043 -12.16107 -12.10174 -11.96550 -11.78672 -11.62457 -11.02471 -10.99971 -10.90973 -10.82229 -10.76540 -10.50252 -10.38768 -10.29753 -10.19512 -10.00455 -9.70929 -9.70224 -9.65451 -9.57098 -9.06440 -8.89429 -6.98929 -5.79230 -3.07957 0.07696 0.62105 2.59847 2.89620 3.28084 3.41007 3.42138 3.47687 3.48930 3.56629 3.70441 3.96942 4.35275 4.50688 4.55471 4.67532 4.75100 4.77904 4.88329 4.94292 5.03834 5.09501 5.11596 5.27074 5.42251 5.43580 5.46671 5.47887 5.55892 5.63572 5.64319 5.68599 5.82543 5.89675 5.92411 5.93859 5.97611 6.02208 6.09842 6.23946 6.27587 6.45557 6.48618 6.54930 6.56800 6.68824 6.93157 7.08961 7.31558 7.64373 7.68642 8.00478 8.39431 9.50700 10.07593 10.42219 11.43450 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.002182 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.715842 B =12829.140936 C =13594.257768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.339 3.661 3 N -0.526 5.526 4 C 0.190 3.810 5 C -0.245 4.245 6 C 0.569 3.431 7 O -0.523 6.523 8 N -0.716 5.716 9 C 0.150 3.850 10 H 0.091 0.909 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.137 4.137 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.724 5.724 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.130 4.130 26 C 0.269 3.731 27 C -0.120 4.120 28 C -0.164 4.164 29 C -0.146 4.146 30 N -0.522 5.522 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.173 0.827 35 H 0.397 0.603 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.149 0.851 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.953 -14.305 9.254 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 N -0.240 5.240 4 C 0.022 3.978 5 C -0.253 4.253 6 C 0.355 3.645 7 O -0.400 6.400 8 N -0.367 5.367 9 C 0.046 3.954 10 H 0.109 0.891 11 C -0.162 4.162 12 C -0.153 4.153 13 C -0.178 4.178 14 C 0.073 3.927 15 H 0.067 0.933 16 N -0.365 5.365 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.169 4.169 26 C 0.123 3.877 27 C -0.139 4.139 28 C -0.201 4.201 29 C -0.185 4.185 30 N -0.237 5.237 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.190 0.810 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.167 0.833 47 H 0.124 0.876 48 H 0.117 0.883 49 H 0.122 0.878 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.340 -15.060 9.233 27.703 hybrid contribution 1.508 1.081 -0.497 1.921 sum -19.832 -13.979 8.736 25.788 Atomic orbital electron populations 1.20647 0.85236 1.04484 1.04265 1.23515 0.98459 0.83219 0.87504 1.68295 1.09631 1.30095 1.16023 1.23498 0.89695 0.97658 0.86908 1.21576 0.96323 0.96022 1.11396 1.17687 0.85645 0.84338 0.76874 1.90738 1.69270 1.30721 1.49261 1.46085 1.08191 1.08458 1.73920 1.21094 0.77138 1.00448 0.96697 0.89124 1.21884 0.96720 1.01681 0.95961 1.21484 0.94067 0.99498 1.00244 1.22300 1.01272 0.96152 0.98050 1.20087 0.89444 0.91872 0.91249 0.93332 1.42397 1.17988 1.12183 1.63884 1.19236 0.92648 0.98254 1.26700 0.91139 1.24741 0.98522 0.96230 1.01507 1.69657 1.37009 1.03634 1.47908 0.86204 0.84044 0.76703 0.79343 1.21735 1.21805 1.20745 1.22110 0.98537 0.96035 1.00245 1.20991 0.88346 0.93851 0.84546 1.21315 1.01150 0.86107 1.05311 1.23026 0.99514 0.96787 1.00753 1.22866 1.02797 1.01597 0.91193 1.68106 1.09056 1.30106 1.16385 0.89130 0.89354 0.89244 0.80966 0.76836 0.92024 0.92095 0.92469 0.92126 0.91848 0.92641 0.78334 0.93531 0.91625 0.91233 0.83343 0.87571 0.88305 0.87824 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.31 36.01 0.37 -0.17 16 2 C 0.34 3.38 7.64 -157.06 -1.20 2.18 16 3 N -0.53 -5.48 10.31 -10.39 -0.11 -5.59 16 4 C 0.19 1.82 10.80 -16.78 -0.18 1.64 16 5 C -0.25 -2.73 5.91 -104.69 -0.62 -3.35 16 6 C 0.57 6.96 7.72 -12.34 -0.10 6.87 16 7 O -0.52 -7.64 13.23 5.32 0.07 -7.57 16 8 N -0.72 -7.84 5.03 -54.76 -0.28 -8.12 16 9 C 0.15 1.95 2.45 -67.93 -0.17 1.78 16 10 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 11 C -0.12 -1.57 5.49 -26.73 -0.15 -1.72 16 12 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 13 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 14 C 0.18 3.44 2.77 -67.93 -0.19 3.25 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -17.44 5.12 -53.43 -0.27 -17.72 16 17 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.13 -1.95 4.86 -26.73 -0.13 -2.08 16 26 C 0.27 3.11 6.53 -81.82 -0.53 2.58 16 27 C -0.12 -1.31 4.76 -91.78 -0.44 -1.74 16 28 C -0.16 -1.43 10.04 -26.74 -0.27 -1.70 16 29 C -0.15 -1.36 10.23 -26.74 -0.27 -1.63 16 30 N -0.52 -5.72 9.34 -6.67 -0.06 -5.78 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.17 1.13 6.58 -52.48 -0.35 0.78 16 35 H 0.40 3.38 6.77 -40.82 -0.28 3.10 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.15 1.81 6.15 -51.92 -0.32 1.50 16 47 H 0.11 0.94 7.58 -51.93 -0.39 0.55 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -32.01 403.99 -11.21 -43.21 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.93 Total: 10.71 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -4.42 Total: -5.37 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.01 Total: -64.22 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.01 -11.21 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981496284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.181 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds