Wall clock time and date at job start Wed Apr 1 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31883 * 118.95195 * 2 1 4 4 C 1.32132 * 120.96714 * 180.02562 * 3 2 1 5 5 C 1.39967 * 118.92649 * 359.97438 * 4 3 2 6 6 C 1.47829 * 120.94386 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99975 * 174.42222 * 6 5 4 8 8 N 1.34774 * 119.99888 * 354.42645 * 6 5 4 9 9 C 1.46501 * 119.99995 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47226 * 34.99755 * 9 8 6 11 11 C 1.52997 * 109.46910 * 274.99722 * 9 8 6 12 12 C 1.53001 * 109.47075 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47115 * 59.99993 * 12 11 9 14 14 C 1.52997 * 109.47154 * 299.99958 * 13 12 11 15 15 H 1.09000 * 109.47573 * 300.00314 * 14 13 12 16 16 N 1.46498 * 109.47507 * 180.02562 * 14 13 12 17 17 C 1.36931 * 119.99950 * 84.99773 * 16 14 13 18 18 H 1.08001 * 120.00316 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99934 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47210 * 89.99462 * 21 19 17 23 23 H 1.48498 * 109.47309 * 209.99803 * 21 19 17 24 24 H 1.48499 * 109.46854 * 329.99791 * 21 19 17 25 25 C 1.53001 * 109.47075 * 60.00018 * 14 13 12 26 26 C 1.39937 * 118.11580 * 0.27116 * 5 4 3 27 27 C 1.50699 * 120.53585 * 179.72429 * 26 5 4 28 28 C 1.52992 * 117.50053 * 179.91109 * 27 26 5 29 29 C 1.52992 * 60.00302 * 252.51102 * 28 27 26 30 30 N 1.31858 * 118.95384 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47062 * 90.00259 * 1 2 3 32 32 H 1.09001 * 109.46532 * 210.00269 * 1 2 3 33 33 H 1.09002 * 109.46748 * 329.99799 * 1 2 3 34 34 H 1.08006 * 120.54066 * 180.02562 * 4 3 2 35 35 H 0.97001 * 120.00184 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47573 * 299.99659 * 11 9 8 37 37 H 1.08998 * 109.47361 * 60.00230 * 11 9 8 38 38 H 1.09007 * 109.47237 * 179.97438 * 12 11 9 39 39 H 1.08999 * 109.47180 * 300.00105 * 12 11 9 40 40 H 1.09003 * 109.47074 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.47005 * 60.00004 * 13 12 11 42 42 H 0.97007 * 119.99740 * 265.00288 * 16 14 13 43 43 H 0.97001 * 120.00051 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.47180 * 59.99895 * 25 14 13 45 45 H 1.09001 * 109.47473 * 180.02562 * 25 14 13 46 46 H 1.09007 * 115.55236 * 325.62229 * 27 26 5 47 47 H 1.08997 * 117.50236 * 0.02562 * 28 27 26 48 48 H 1.09007 * 117.50290 * 145.02053 * 28 27 26 49 49 H 1.09001 * 117.50313 * 252.50854 * 29 28 27 50 50 H 1.08998 * 117.51927 * 107.48076 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 -0.0005 5 6 4.1856 0.0000 -0.0005 6 6 5.6639 -0.0001 -0.0005 7 8 6.2716 -1.0478 0.1018 8 7 6.3378 1.1616 -0.1138 9 6 7.8028 1.1616 -0.1133 10 1 8.1663 0.2664 -0.6178 11 6 8.3121 1.1765 1.3293 12 6 9.8422 1.1758 1.3300 13 6 10.3530 2.4173 0.5959 14 6 9.8436 2.4025 -0.8467 15 1 10.2067 1.5070 -1.3511 16 7 10.3332 3.5908 -1.5497 17 6 11.5749 3.5819 -2.1268 18 1 12.1933 2.6986 -2.0640 19 6 12.0390 4.7081 -2.7925 20 7 11.2853 5.7843 -2.8696 21 14 13.7327 4.6957 -3.5804 22 1 13.6233 4.2173 -4.9819 23 1 14.2941 6.0705 -3.5691 24 1 14.6273 3.7894 -2.8165 25 6 8.3136 2.4031 -0.8473 26 6 3.4661 -1.2002 -0.0058 27 6 4.1856 -2.5243 -0.0123 28 6 3.3306 -3.7930 -0.0158 29 6 4.0906 -3.3862 1.2482 30 7 2.1453 -1.1538 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 3.9817 2.1494 -0.0001 35 1 5.8528 1.9977 -0.1958 36 1 7.9487 2.0717 1.8339 37 1 7.9487 0.2918 1.8522 38 1 10.2051 1.1869 2.3578 39 1 10.2053 0.2804 0.8256 40 1 11.4430 2.4166 0.5960 41 1 9.9898 3.3127 1.1003 42 1 9.7776 4.3841 -1.6064 43 1 11.6094 6.5712 -3.3351 44 1 7.9504 3.2985 -0.3429 45 1 7.9506 2.3921 -1.8751 46 1 5.1231 -2.5472 -0.5681 47 1 2.2476 -3.6701 -0.0137 48 1 3.7052 -4.6510 -0.5741 49 1 4.9652 -3.9764 1.5216 50 1 3.5079 -2.9954 2.0824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981496284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:45 Heat of formation + Delta-G solvation = 16.784194 kcal Electronic energy + Delta-G solvation = -29820.168568 eV Core-core repulsion = 25847.079746 eV Total energy + Delta-G solvation = -3973.088822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.55169 -40.87412 -39.27229 -38.25255 -36.25046 -35.14328 -34.47540 -34.05370 -32.91340 -30.97617 -29.84756 -29.14462 -26.51367 -25.71205 -24.97581 -23.44650 -23.22961 -22.79572 -22.08849 -21.56806 -20.89766 -19.33326 -18.93527 -18.58646 -17.50651 -17.18676 -16.75116 -16.44918 -16.10151 -16.07742 -15.76578 -15.49049 -15.27894 -15.02298 -14.97926 -14.81937 -14.35373 -14.22995 -13.66035 -13.50507 -13.40888 -13.32525 -13.00905 -12.89268 -12.82980 -12.78330 -12.50762 -12.36743 -12.25736 -12.14305 -12.03500 -11.96379 -11.66537 -11.63923 -11.40851 -11.31928 -11.22791 -10.87417 -10.68187 -10.48021 -10.42188 -10.04785 -8.99002 -7.93583 -5.21005 -0.71465 -0.15463 1.47623 1.48319 1.56611 1.70192 1.93960 2.50054 2.56835 2.69987 2.86620 2.95515 3.23466 3.39871 3.52597 3.63182 3.72458 3.87453 3.96996 3.99538 4.04801 4.07907 4.17765 4.27860 4.32341 4.43224 4.53616 4.54830 4.59055 4.67975 4.68748 4.73459 4.77894 4.82776 4.85808 4.98147 5.02135 5.10406 5.16443 5.18461 5.23883 5.26896 5.31125 5.36782 5.44310 5.51540 5.54708 5.67081 5.77244 6.29347 6.41996 6.88088 7.08655 7.35767 8.11988 8.35157 9.29756 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.002182 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.715842 B =12829.140936 C =13594.257768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.538 5.538 4 C 0.196 3.804 5 C -0.260 4.260 6 C 0.572 3.428 7 O -0.550 6.550 8 N -0.706 5.706 9 C 0.162 3.838 10 H 0.075 0.925 11 C -0.116 4.116 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.177 3.823 15 H 0.037 0.963 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.072 0.928 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.967 3.033 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.271 1.271 25 C -0.116 4.116 26 C 0.258 3.742 27 C -0.139 4.139 28 C -0.149 4.149 29 C -0.142 4.142 30 N -0.531 5.531 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.132 0.868 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.223 -15.014 10.174 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 N -0.252 5.252 4 C 0.029 3.971 5 C -0.268 4.268 6 C 0.358 3.642 7 O -0.429 6.429 8 N -0.357 5.357 9 C 0.057 3.943 10 H 0.093 0.907 11 C -0.154 4.154 12 C -0.144 4.144 13 C -0.167 4.167 14 C 0.068 3.932 15 H 0.055 0.945 16 N -0.375 5.375 17 C -0.367 4.367 18 H 0.090 0.910 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.797 3.203 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.196 1.196 25 C -0.155 4.155 26 C 0.112 3.888 27 C -0.157 4.157 28 C -0.186 4.186 29 C -0.180 4.180 30 N -0.246 5.246 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.218 0.782 35 H 0.248 0.752 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.149 0.851 47 H 0.124 0.876 48 H 0.131 0.869 49 H 0.128 0.872 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.635 -15.803 10.177 29.422 hybrid contribution 1.835 1.236 -0.765 2.341 sum -20.800 -14.567 9.413 27.082 Atomic orbital electron populations 1.20793 0.82764 1.05525 1.05328 1.24264 1.00019 0.82905 0.86180 1.68411 1.09870 1.30272 1.16688 1.23943 0.89641 0.98211 0.85346 1.21484 0.95508 0.96673 1.13103 1.17820 0.86111 0.84001 0.76221 1.90730 1.69891 1.31704 1.50543 1.45863 1.07262 1.08984 1.73593 1.20795 0.78321 0.98521 0.96647 0.90710 1.21812 0.95693 1.02431 0.95512 1.21408 0.94864 0.97489 1.00687 1.22106 0.99781 0.97868 0.96989 1.20306 0.91974 0.89316 0.91555 0.94510 1.42578 1.17143 1.13416 1.64396 1.19573 0.93642 0.97960 1.25514 0.90969 1.25486 1.02033 0.96243 1.03027 1.69798 1.38616 1.04119 1.49404 0.85227 0.80298 0.76399 0.78398 1.21609 1.22276 1.19608 1.21893 0.95657 0.97572 1.00397 1.21182 0.88881 0.94265 0.84495 1.21250 1.01121 0.86905 1.06466 1.23070 0.99266 0.96050 1.00206 1.22903 1.03101 1.01053 0.90955 1.68178 1.08710 1.30627 1.17120 0.87849 0.88334 0.88152 0.78212 0.75205 0.90747 0.91772 0.90680 0.92226 0.94119 0.92792 0.79429 0.94113 0.90461 0.91991 0.85053 0.87558 0.86918 0.87174 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.31 71.24 0.73 -0.15 16 2 C 0.33 6.09 7.64 138.70 1.06 7.15 16 3 N -0.54 -10.27 10.31 -186.79 -1.93 -12.19 16 4 C 0.20 3.42 10.80 85.07 0.92 4.34 16 5 C -0.26 -5.54 5.91 -19.91 -0.12 -5.66 16 6 C 0.57 13.49 7.72 86.78 0.67 14.16 16 7 O -0.55 -15.95 13.23 -3.88 -0.05 -16.00 16 8 N -0.71 -14.34 5.03 -445.43 -2.24 -16.58 16 9 C 0.16 4.00 2.45 44.99 0.11 4.11 16 10 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 11 C -0.12 -2.69 5.49 30.59 0.17 -2.52 16 12 C -0.11 -2.72 5.92 30.60 0.18 -2.54 16 13 C -0.13 -4.23 5.50 30.59 0.17 -4.07 16 14 C 0.18 6.61 2.77 44.99 0.12 6.74 16 15 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 16 N -0.74 -35.79 5.12 -322.95 -1.65 -37.45 16 17 C -0.23 -12.84 9.93 84.03 0.83 -12.00 16 18 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 21 Si 0.97 45.97 29.55 68.60 2.03 47.99 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C -0.12 -3.37 4.86 30.60 0.15 -3.22 16 26 C 0.26 5.82 6.53 42.92 0.28 6.10 16 27 C -0.14 -2.98 4.76 -11.54 -0.05 -3.04 16 28 C -0.15 -2.47 10.04 30.59 0.31 -2.16 16 29 C -0.14 -2.54 10.23 30.59 0.31 -2.22 16 30 N -0.53 -11.09 9.34 -175.02 -1.63 -12.72 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.20 2.10 6.58 -2.91 -0.02 2.08 16 35 H 0.41 6.06 6.77 -92.71 -0.63 5.43 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.37 19.36 7.80 -92.70 -0.72 18.64 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.13 3.29 6.15 -2.38 -0.01 3.27 16 47 H 0.11 1.77 7.58 -2.39 -0.02 1.75 16 48 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -69.27 403.99 0.73 -68.54 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.38 Total: 35.38 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 6.31 Total: 1.18 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -7.17 Total: -137.09 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.05 Total: -16.00 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -69.27 0.73 -68.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981496284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.324 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds