Wall clock time and date at job start Wed Apr 1 2020 03:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47199 * 2 1 4 4 N 1.32160 * 120.53717 * 85.06805 * 3 2 1 5 5 C 1.31857 * 120.96691 * 179.97438 * 4 3 2 6 6 N 1.31882 * 122.09718 * 359.97438 * 5 4 3 7 7 C 1.32136 * 120.96501 * 359.97438 * 6 5 4 8 8 C 1.39928 * 120.53668 * 264.78338 * 3 2 1 9 9 C 1.47835 * 120.93814 * 0.02562 * 8 3 2 10 10 O 1.21545 * 120.00227 * 35.08046 * 9 8 3 11 11 N 1.34780 * 119.99615 * 215.08530 * 9 8 3 12 12 C 1.47207 * 126.70530 * 5.25856 * 11 9 8 13 13 C 1.54038 * 106.26159 * 148.63713 * 12 11 9 14 14 C 1.52998 * 112.76545 * 141.67938 * 13 12 11 15 15 C 1.56815 * 109.45129 * 268.28273 * 13 12 11 16 16 N 1.48112 * 105.09748 * 88.54603 * 15 13 12 17 17 C 1.36930 * 127.84528 * 219.46261 * 16 15 13 18 18 H 1.08009 * 120.00058 * 24.45572 * 17 16 15 19 19 C 1.38814 * 120.00175 * 204.46166 * 17 16 15 20 20 N 1.31612 * 120.00064 * 5.22465 * 19 17 16 21 21 Si 1.86806 * 120.00157 * 185.22504 * 19 17 16 22 22 H 1.48500 * 109.46834 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47228 * 119.99584 * 21 19 17 24 24 H 1.48495 * 109.46972 * 240.00028 * 21 19 17 25 25 C 1.48111 * 104.31160 * 39.46000 * 16 15 13 26 26 C 1.54314 * 104.71688 * 320.22510 * 25 16 15 27 27 C 1.53000 * 112.07756 * 146.94290 * 26 25 16 28 28 C 1.47201 * 126.70094 * 185.58264 * 11 9 8 29 29 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47242 * 300.00220 * 1 2 3 31 31 H 1.08998 * 109.47011 * 60.00010 * 1 2 3 32 32 H 1.09008 * 109.46471 * 120.00090 * 2 1 3 33 33 H 1.09002 * 109.47242 * 239.99780 * 2 1 3 34 34 H 1.07999 * 118.94868 * 180.02562 * 5 4 3 35 35 H 1.07993 * 120.53860 * 179.97438 * 7 6 5 36 36 H 1.08998 * 110.07137 * 267.95443 * 12 11 9 37 37 H 1.09006 * 110.06606 * 29.47994 * 12 11 9 38 38 H 1.09008 * 109.47256 * 301.37807 * 14 13 12 39 39 H 1.09000 * 109.47572 * 61.37790 * 14 13 12 40 40 H 1.09000 * 109.47156 * 181.38311 * 14 13 12 41 41 H 1.08999 * 110.47154 * 329.47659 * 15 13 12 42 42 H 1.08998 * 110.02995 * 207.38850 * 15 13 12 43 43 H 0.97005 * 120.00498 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.38758 * 201.40934 * 25 16 15 45 45 H 1.08999 * 110.38898 * 79.03512 * 25 16 15 46 46 H 1.08998 * 109.47314 * 182.00925 * 27 26 25 47 47 H 1.08994 * 109.46841 * 302.01437 * 27 26 25 48 48 H 1.09002 * 109.46620 * 62.00575 * 27 26 25 49 49 H 1.09007 * 110.06414 * 330.52347 * 28 11 9 50 50 H 1.08992 * 110.07168 * 91.99690 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1639 2.0865 1.1341 5 6 2.6031 3.3297 1.1440 6 7 2.9306 3.9661 0.0362 7 6 2.8309 3.3758 -1.1417 8 6 2.3726 2.0545 -1.2002 9 6 2.2481 1.3498 -2.4938 10 8 1.3413 0.5601 -2.6708 11 7 3.1403 1.5829 -3.4767 12 6 4.3484 2.4193 -3.3883 13 6 5.3802 1.7891 -4.3428 14 6 6.2083 2.8342 -5.0930 15 6 6.2634 0.7621 -3.5527 16 7 5.5344 -0.5240 -3.6439 17 6 5.3786 -1.4723 -2.6685 18 1 5.4485 -1.1929 -1.6275 19 6 5.1310 -2.7929 -3.0175 20 7 5.1479 -3.1532 -4.2833 21 14 4.7739 -4.0585 -1.6908 22 1 4.8136 -3.4037 -0.3586 23 1 3.4278 -4.6442 -1.9150 24 1 5.7968 -5.1336 -1.7441 25 6 5.0120 -0.5513 -5.0295 26 6 4.5538 0.8964 -5.3044 27 6 4.7468 1.2923 -6.7696 28 6 3.0934 1.0561 -4.8505 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8932 -0.5139 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.6985 3.8429 2.0894 35 1 3.1005 3.9035 -2.0445 36 1 4.1211 3.4389 -3.6995 37 1 4.7318 2.4159 -2.3678 38 1 5.5442 3.4799 -5.6678 39 1 6.7695 3.4352 -4.3775 40 1 6.9011 2.3323 -5.7685 41 1 6.3648 1.0681 -2.5115 42 1 7.2444 0.6763 -4.0199 43 1 4.9746 -4.0759 -4.5273 44 1 4.1682 -1.2373 -5.1037 45 1 5.7990 -0.8393 -5.7265 46 1 4.4442 2.3301 -6.9085 47 1 5.7965 1.1804 -7.0409 48 1 4.1372 0.6481 -7.4033 49 1 2.5898 0.0894 -4.8633 50 1 2.5728 1.7574 -5.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982807176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:24 Heat of formation + Delta-G solvation = 44.922177 kcal Electronic energy + Delta-G solvation = -32822.724010 eV Core-core repulsion = 28850.855343 eV Total energy + Delta-G solvation = -3971.868668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38188 -40.19471 -38.25005 -35.25815 -34.54196 -33.26487 -32.76198 -31.70703 -30.87646 -30.75350 -27.02349 -26.18075 -25.97145 -25.06345 -24.86929 -24.57262 -22.22674 -21.83885 -20.16875 -19.76788 -18.04016 -17.83495 -17.20258 -16.83501 -16.37421 -15.73156 -15.37027 -14.98051 -14.69037 -14.33331 -13.97822 -13.85061 -13.68015 -13.57871 -13.42828 -13.33908 -13.20525 -12.85928 -12.44202 -12.35572 -12.15385 -11.77804 -11.68046 -11.51512 -11.46952 -11.43349 -11.42692 -10.88163 -10.84219 -10.77440 -10.70136 -10.55946 -10.17139 -10.04813 -9.87191 -9.76620 -9.66558 -9.62069 -9.47524 -9.32255 -8.67648 -8.29460 -6.75394 -5.83746 -3.21214 0.51791 0.96498 2.89237 3.20511 3.36197 3.43087 3.44374 3.74312 3.95576 4.00483 4.31692 4.43461 4.51526 4.73537 4.84827 4.96927 5.07673 5.22944 5.33039 5.37561 5.39214 5.48410 5.50094 5.54223 5.58899 5.61915 5.67455 5.82161 5.82667 5.92294 6.03318 6.06199 6.09960 6.12060 6.18407 6.22021 6.28125 6.33221 6.41235 6.43298 6.47837 6.53822 6.61269 6.78816 6.84036 6.86785 7.24283 7.50266 7.69643 7.80364 7.94557 8.20850 8.37037 9.08623 9.71416 10.52071 11.31322 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008708 B = 0.006008 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.632197 B = 4659.385402 C = 6525.150721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C 0.238 3.762 4 N -0.522 5.522 5 C 0.307 3.693 6 N -0.529 5.529 7 C 0.177 3.823 8 C -0.224 4.224 9 C 0.589 3.411 10 O -0.522 6.522 11 N -0.591 5.591 12 C 0.116 3.884 13 C -0.090 4.090 14 C -0.123 4.123 15 C 0.141 3.859 16 N -0.585 5.585 17 C -0.225 4.225 18 H 0.066 0.934 19 C 0.006 3.994 20 N -0.908 5.908 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.177 3.823 26 C -0.098 4.098 27 C -0.123 4.123 28 C 0.129 3.871 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.199 0.801 35 H 0.172 0.828 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.025 0.975 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.083 0.917 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 14.571 1.275 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 C 0.092 3.908 4 N -0.236 5.236 5 C 0.020 3.980 6 N -0.243 5.243 7 C 0.011 3.989 8 C -0.231 4.231 9 C 0.376 3.624 10 O -0.399 6.399 11 N -0.322 5.322 12 C -0.007 4.007 13 C -0.092 4.092 14 C -0.181 4.181 15 C 0.014 3.986 16 N -0.307 5.307 17 C -0.354 4.354 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.553 5.553 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.216 1.216 25 C 0.051 3.949 26 C -0.100 4.100 27 C -0.181 4.181 28 C 0.007 3.993 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.215 0.785 35 H 0.189 0.811 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.102 0.898 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.934 14.312 2.199 15.005 hybrid contribution 0.000 -1.042 -0.056 1.043 sum -3.934 13.270 2.143 14.006 Atomic orbital electron populations 1.21571 0.93070 1.02493 1.01854 1.20745 0.97474 0.88877 1.05112 1.21928 0.85975 0.96504 0.86423 1.68358 1.15918 1.09612 1.29669 1.25131 0.88308 0.87499 0.97085 1.68429 1.18111 1.38710 0.99039 1.23578 0.88204 0.90535 0.96585 1.21640 1.07100 0.97890 0.96506 1.17178 0.81901 0.81517 0.81823 1.90774 1.33963 1.34639 1.80572 1.48008 1.23676 1.48605 1.11921 1.22239 0.85164 0.93004 1.00279 1.22843 0.95684 0.95463 0.95252 1.21600 0.99318 0.97538 0.99595 1.22113 0.93054 0.87180 0.96286 1.44636 1.58099 1.17689 1.10303 1.18797 1.43961 0.86166 0.86454 0.91592 1.24987 1.01339 0.96719 0.96194 1.69888 1.53634 1.16964 1.14830 0.86203 0.77725 0.81714 0.81137 1.20292 1.21418 1.21586 1.21501 0.97870 0.89134 0.86354 1.22577 0.93292 1.00146 0.94023 1.21634 1.01890 1.00118 0.94470 1.22040 0.96989 0.99674 0.80624 0.91687 0.93095 0.91679 0.89800 0.87776 0.78492 0.81147 0.92037 0.91153 0.92578 0.92885 0.91820 0.94045 0.95778 0.93619 0.90714 0.95682 0.93083 0.92106 0.92654 0.89812 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.70 37.16 0.36 -1.54 16 2 C -0.08 -1.38 5.54 -27.88 -0.15 -1.54 16 3 C 0.24 3.86 6.11 -81.82 -0.50 3.36 16 4 N -0.52 -7.71 10.36 -10.48 -0.11 -7.82 16 5 C 0.31 3.85 12.27 -92.03 -1.13 2.72 16 6 N -0.53 -6.96 10.42 -14.24 -0.15 -7.11 16 7 C 0.18 2.38 9.34 -16.77 -0.16 2.23 16 8 C -0.22 -3.57 5.45 -104.69 -0.57 -4.15 16 9 C 0.59 10.63 7.07 -12.33 -0.09 10.54 16 10 O -0.52 -10.77 13.89 5.33 0.07 -10.70 16 11 N -0.59 -9.89 3.32 -172.56 -0.57 -10.46 16 12 C 0.12 1.64 4.37 -3.11 -0.01 1.63 16 13 C -0.09 -1.35 1.15 -150.81 -0.17 -1.53 16 14 C -0.12 -1.41 7.65 37.16 0.28 -1.12 16 15 C 0.14 2.73 6.37 -1.09 -0.01 2.72 16 16 N -0.58 -14.02 3.36 -167.41 -0.56 -14.59 16 17 C -0.23 -6.12 10.32 -15.06 -0.16 -6.28 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 19 C 0.01 0.17 5.41 -17.43 -0.09 0.07 16 20 N -0.91 -26.19 11.23 55.49 0.62 -25.57 16 21 Si 0.90 22.15 29.56 -169.99 -5.02 17.12 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.18 3.94 4.76 -2.47 -0.01 3.93 16 26 C -0.10 -1.61 1.06 -152.33 -0.16 -1.78 16 27 C -0.12 -1.62 7.50 37.16 0.28 -1.34 16 28 C 0.13 2.17 6.10 -3.26 -0.02 2.15 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.01 7.24 -51.93 -0.38 0.63 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.10 2.02 6.11 -51.93 -0.32 1.70 16 34 H 0.20 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.17 1.88 6.04 -52.49 -0.32 1.57 16 36 H 0.06 0.68 7.20 -51.93 -0.37 0.31 16 37 H 0.07 1.04 6.13 -51.93 -0.32 0.72 16 38 H 0.06 0.55 7.09 -51.92 -0.37 0.19 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.75 7.17 -51.93 -0.37 0.38 16 41 H 0.04 0.80 7.53 -51.93 -0.39 0.41 16 42 H 0.02 0.48 8.00 -51.93 -0.42 0.06 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.07 1.92 6.31 -51.93 -0.33 1.60 16 45 H 0.03 0.60 7.97 -51.93 -0.41 0.19 16 46 H 0.05 0.56 7.10 -51.93 -0.37 0.19 16 47 H 0.06 0.79 7.16 -51.93 -0.37 0.42 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 1.68 7.09 -51.93 -0.37 1.31 16 50 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -31.63 384.57 -9.83 -41.46 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.59 Total: 1.77 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -2.31 Total: 10.09 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.77 Total: -65.55 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.63 -9.83 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982807176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.380 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds