Wall clock time and date at job start Wed Apr 1 2020 03:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47199 * 2 1 4 4 N 1.32160 * 120.53717 * 85.06805 * 3 2 1 5 5 C 1.31857 * 120.96691 * 179.97438 * 4 3 2 6 6 N 1.31882 * 122.09718 * 359.97438 * 5 4 3 7 7 C 1.32136 * 120.96501 * 359.97438 * 6 5 4 8 8 C 1.39928 * 120.53668 * 264.78338 * 3 2 1 9 9 C 1.47835 * 120.93814 * 0.02562 * 8 3 2 10 10 O 1.21545 * 120.00227 * 35.08046 * 9 8 3 11 11 N 1.34780 * 119.99615 * 215.08530 * 9 8 3 12 12 C 1.47207 * 126.70530 * 5.25856 * 11 9 8 13 13 C 1.54038 * 106.26159 * 148.63713 * 12 11 9 14 14 C 1.52998 * 112.76545 * 141.67938 * 13 12 11 15 15 C 1.56815 * 109.45129 * 268.28273 * 13 12 11 16 16 N 1.48112 * 105.09748 * 88.54603 * 15 13 12 17 17 C 1.36930 * 127.84528 * 219.46261 * 16 15 13 18 18 H 1.08009 * 120.00058 * 24.45572 * 17 16 15 19 19 C 1.38814 * 120.00175 * 204.46166 * 17 16 15 20 20 N 1.31612 * 120.00064 * 5.22465 * 19 17 16 21 21 Si 1.86806 * 120.00157 * 185.22504 * 19 17 16 22 22 H 1.48500 * 109.46834 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47228 * 119.99584 * 21 19 17 24 24 H 1.48495 * 109.46972 * 240.00028 * 21 19 17 25 25 C 1.48111 * 104.31160 * 39.46000 * 16 15 13 26 26 C 1.54314 * 104.71688 * 320.22510 * 25 16 15 27 27 C 1.53000 * 112.07756 * 146.94290 * 26 25 16 28 28 C 1.47201 * 126.70094 * 185.58264 * 11 9 8 29 29 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47242 * 300.00220 * 1 2 3 31 31 H 1.08998 * 109.47011 * 60.00010 * 1 2 3 32 32 H 1.09008 * 109.46471 * 120.00090 * 2 1 3 33 33 H 1.09002 * 109.47242 * 239.99780 * 2 1 3 34 34 H 1.07999 * 118.94868 * 180.02562 * 5 4 3 35 35 H 1.07993 * 120.53860 * 179.97438 * 7 6 5 36 36 H 1.08998 * 110.07137 * 267.95443 * 12 11 9 37 37 H 1.09006 * 110.06606 * 29.47994 * 12 11 9 38 38 H 1.09008 * 109.47256 * 301.37807 * 14 13 12 39 39 H 1.09000 * 109.47572 * 61.37790 * 14 13 12 40 40 H 1.09000 * 109.47156 * 181.38311 * 14 13 12 41 41 H 1.08999 * 110.47154 * 329.47659 * 15 13 12 42 42 H 1.08998 * 110.02995 * 207.38850 * 15 13 12 43 43 H 0.97005 * 120.00498 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.38758 * 201.40934 * 25 16 15 45 45 H 1.08999 * 110.38898 * 79.03512 * 25 16 15 46 46 H 1.08998 * 109.47314 * 182.00925 * 27 26 25 47 47 H 1.08994 * 109.46841 * 302.01437 * 27 26 25 48 48 H 1.09002 * 109.46620 * 62.00575 * 27 26 25 49 49 H 1.09007 * 110.06414 * 330.52347 * 28 11 9 50 50 H 1.08992 * 110.07168 * 91.99690 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1639 2.0865 1.1341 5 6 2.6031 3.3297 1.1440 6 7 2.9306 3.9661 0.0362 7 6 2.8309 3.3758 -1.1417 8 6 2.3726 2.0545 -1.2002 9 6 2.2481 1.3498 -2.4938 10 8 1.3413 0.5601 -2.6708 11 7 3.1403 1.5829 -3.4767 12 6 4.3484 2.4193 -3.3883 13 6 5.3802 1.7891 -4.3428 14 6 6.2083 2.8342 -5.0930 15 6 6.2634 0.7621 -3.5527 16 7 5.5344 -0.5240 -3.6439 17 6 5.3786 -1.4723 -2.6685 18 1 5.4485 -1.1929 -1.6275 19 6 5.1310 -2.7929 -3.0175 20 7 5.1479 -3.1532 -4.2833 21 14 4.7739 -4.0585 -1.6908 22 1 4.8136 -3.4037 -0.3586 23 1 3.4278 -4.6442 -1.9150 24 1 5.7968 -5.1336 -1.7441 25 6 5.0120 -0.5513 -5.0295 26 6 4.5538 0.8964 -5.3044 27 6 4.7468 1.2923 -6.7696 28 6 3.0934 1.0561 -4.8505 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8932 -0.5139 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.6985 3.8429 2.0894 35 1 3.1005 3.9035 -2.0445 36 1 4.1211 3.4389 -3.6995 37 1 4.7318 2.4159 -2.3678 38 1 5.5442 3.4799 -5.6678 39 1 6.7695 3.4352 -4.3775 40 1 6.9011 2.3323 -5.7685 41 1 6.3648 1.0681 -2.5115 42 1 7.2444 0.6763 -4.0199 43 1 4.9746 -4.0759 -4.5273 44 1 4.1682 -1.2373 -5.1037 45 1 5.7990 -0.8393 -5.7265 46 1 4.4442 2.3301 -6.9085 47 1 5.7965 1.1804 -7.0409 48 1 4.1372 0.6481 -7.4033 49 1 2.5898 0.0894 -4.8633 50 1 2.5728 1.7574 -5.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982807176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:23 Heat of formation + Delta-G solvation = 25.422722 kcal Electronic energy + Delta-G solvation = -32823.569570 eV Core-core repulsion = 28850.855343 eV Total energy + Delta-G solvation = -3972.714227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53972 -41.50297 -39.63589 -36.64369 -35.98412 -34.78470 -34.00691 -33.03978 -32.55151 -32.00872 -28.33629 -27.89136 -27.13309 -26.46173 -26.10194 -25.80836 -23.89456 -23.02841 -21.72829 -21.05659 -19.31944 -19.04631 -18.91333 -18.01361 -17.81383 -17.07558 -16.84105 -16.53547 -16.17222 -15.65467 -15.45873 -15.06735 -15.02783 -14.94415 -14.85315 -14.47851 -14.37278 -14.28878 -13.78062 -13.65481 -13.59816 -13.36733 -12.97042 -12.91958 -12.88141 -12.68434 -12.63199 -12.52529 -12.43085 -12.15757 -12.05964 -11.92609 -11.80032 -11.72660 -11.53720 -11.12175 -11.10257 -10.95943 -10.72913 -10.69620 -10.42512 -9.64505 -8.74178 -7.97777 -5.34355 -0.58884 -0.15009 1.33868 1.36270 1.44256 1.57433 1.96977 2.40287 2.62909 2.85489 3.03443 3.20754 3.23831 3.28383 3.50584 3.66463 3.69687 3.76383 3.86822 4.10627 4.17477 4.21692 4.26402 4.31726 4.41731 4.45895 4.51913 4.62087 4.65364 4.77471 4.82600 4.86343 4.87425 4.91297 4.99996 5.02139 5.08382 5.12563 5.17309 5.24280 5.24845 5.30555 5.36094 5.42453 5.45001 5.50491 5.62252 5.73572 5.78744 6.19682 6.50260 6.87524 7.00331 7.03619 7.67088 8.48954 9.16380 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008708 B = 0.006008 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.632197 B = 4659.385402 C = 6525.150721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C 0.224 3.776 4 N -0.533 5.533 5 C 0.313 3.687 6 N -0.527 5.527 7 C 0.194 3.806 8 C -0.245 4.245 9 C 0.581 3.419 10 O -0.563 6.563 11 N -0.595 5.595 12 C 0.114 3.886 13 C -0.073 4.073 14 C -0.117 4.117 15 C 0.133 3.867 16 N -0.608 5.608 17 C -0.225 4.225 18 H 0.058 0.942 19 C -0.049 4.049 20 N -0.937 5.937 21 Si 0.955 3.045 22 H -0.269 1.269 23 H -0.294 1.294 24 H -0.285 1.285 25 C 0.185 3.815 26 C -0.086 4.086 27 C -0.117 4.117 28 C 0.130 3.870 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.240 0.760 35 H 0.200 0.800 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.022 0.978 43 H 0.248 0.752 44 H 0.026 0.974 45 H -0.001 1.001 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.036 0.964 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 18.995 1.679 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.121 4.121 3 C 0.078 3.922 4 N -0.247 5.247 5 C 0.026 3.974 6 N -0.241 5.241 7 C 0.027 3.973 8 C -0.252 4.252 9 C 0.369 3.631 10 O -0.443 6.443 11 N -0.325 5.325 12 C -0.008 4.008 13 C -0.076 4.076 14 C -0.175 4.175 15 C 0.008 3.992 16 N -0.331 5.331 17 C -0.355 4.355 18 H 0.076 0.924 19 C -0.244 4.244 20 N -0.584 5.584 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.222 1.222 24 H -0.212 1.212 25 C 0.059 3.941 26 C -0.089 4.089 27 C -0.175 4.175 28 C 0.007 3.993 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.255 0.745 35 H 0.217 0.783 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.017 0.983 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.365 18.788 2.611 19.264 hybrid contribution -0.110 -2.395 -0.125 2.401 sum -3.475 16.393 2.486 16.940 Atomic orbital electron populations 1.21486 0.91739 1.02922 1.01817 1.20627 0.98712 0.89567 1.03233 1.21872 0.86553 0.96434 0.87358 1.68398 1.16803 1.10713 1.28826 1.25997 0.86169 0.86664 0.98526 1.68577 1.18131 1.38314 0.99034 1.23961 0.86390 0.89193 0.97795 1.21531 1.09316 0.99199 0.95171 1.17584 0.81640 0.81193 0.82642 1.90744 1.35791 1.36467 1.81345 1.48146 1.24186 1.48658 1.11542 1.22510 0.83598 0.94750 0.99980 1.22814 0.95128 0.95096 0.94527 1.21624 0.99384 0.96607 0.99841 1.22348 0.93556 0.86243 0.97095 1.44843 1.59318 1.18752 1.10199 1.18969 1.42423 0.87099 0.87008 0.92409 1.25635 1.02407 0.98472 0.97851 1.70046 1.55433 1.16704 1.16260 0.85363 0.77006 0.79737 0.79511 1.19337 1.22158 1.21207 1.21295 0.95155 0.92374 0.85243 1.22442 0.93208 0.96224 0.97010 1.21634 1.02290 1.02308 0.91240 1.22019 0.97003 0.98486 0.81745 0.91098 0.91374 0.93192 0.89417 0.91689 0.74457 0.78306 0.86838 0.91664 0.89348 0.90932 0.92091 0.94318 0.96000 0.94303 0.95544 0.98270 0.89058 0.91722 0.93131 0.94543 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 9.70 71.98 0.70 -2.91 16 2 C -0.08 -2.86 5.54 29.85 0.17 -2.69 16 3 C 0.22 7.23 6.11 42.92 0.26 7.49 16 4 N -0.53 -14.90 10.36 -187.07 -1.94 -16.84 16 5 C 0.31 6.84 12.27 180.84 2.22 9.06 16 6 N -0.53 -11.95 10.42 -198.98 -2.07 -14.03 16 7 C 0.19 4.60 9.34 85.07 0.79 5.40 16 8 C -0.24 -7.63 5.45 -19.91 -0.11 -7.74 16 9 C 0.58 21.29 7.07 86.78 0.61 21.90 16 10 O -0.56 -24.63 13.89 -3.86 -0.05 -24.69 16 11 N -0.60 -19.36 3.32 -818.14 -2.71 -22.07 16 12 C 0.11 2.80 4.37 86.60 0.38 3.18 16 13 C -0.07 -2.00 1.15 -49.79 -0.06 -2.06 16 14 C -0.12 -2.05 7.65 71.98 0.55 -1.50 16 15 C 0.13 5.12 6.37 87.41 0.56 5.67 16 16 N -0.61 -30.35 3.36 -683.58 -2.30 -32.65 16 17 C -0.23 -12.84 10.32 84.04 0.87 -11.98 16 18 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 19 C -0.05 -2.85 5.41 84.86 0.46 -2.39 16 20 N -0.94 -57.48 11.23 21.65 0.24 -57.23 16 21 Si 0.96 47.76 29.56 68.60 2.03 49.79 16 22 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 C 0.19 8.67 4.76 86.52 0.41 9.08 16 26 C -0.09 -2.77 1.06 -50.77 -0.05 -2.82 16 27 C -0.12 -2.74 7.50 71.98 0.54 -2.20 16 28 C 0.13 4.32 6.10 86.50 0.53 4.85 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.62 7.24 -2.39 -0.02 1.60 16 32 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 33 H 0.06 2.74 6.11 -2.39 -0.01 2.72 16 34 H 0.24 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.20 3.42 6.04 -2.91 -0.02 3.40 16 36 H 0.11 1.74 7.20 -2.39 -0.02 1.72 16 37 H 0.06 1.72 6.13 -2.38 -0.01 1.71 16 38 H 0.09 1.07 7.09 -2.38 -0.02 1.06 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.15 7.17 -2.39 -0.02 1.14 16 41 H 0.04 1.48 7.53 -2.39 -0.02 1.46 16 42 H 0.02 0.86 8.00 -2.39 -0.02 0.84 16 43 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 44 H 0.03 1.47 6.31 -2.39 -0.02 1.45 16 45 H 0.00 -0.03 7.97 -2.39 -0.02 -0.05 16 46 H 0.09 1.47 7.10 -2.39 -0.02 1.45 16 47 H 0.06 1.49 7.16 -2.39 -0.02 1.48 16 48 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.04 1.56 7.09 -2.38 -0.02 1.54 16 50 H 0.09 2.43 7.88 -2.39 -0.02 2.41 16 Total: -1.00 -77.00 384.57 2.97 -74.03 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.95 Total: 13.33 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 8.83 Total: 30.35 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -8.78 Total: -142.81 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -77.00 2.97 -74.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982807176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.453 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds