Wall clock time and date at job start Wed Apr 1 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31887 * 118.94933 * 2 1 4 4 C 1.32136 * 120.96606 * 179.97438 * 3 2 1 5 5 C 1.39967 * 118.92281 * 359.97438 * 4 3 2 6 6 C 1.47832 * 120.93907 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99879 * 228.81890 * 6 5 4 8 8 N 1.34779 * 120.00298 * 48.81537 * 6 5 4 9 9 C 1.46929 * 120.62249 * 5.50413 * 8 6 5 10 10 C 1.53631 * 108.53880 * 126.36963 * 9 8 6 11 11 C 1.53043 * 109.24434 * 54.85332 * 10 9 8 12 12 N 1.46496 * 109.44837 * 178.49940 * 11 10 9 13 13 C 1.46490 * 120.00384 * 60.05519 * 12 11 10 14 14 C 1.36941 * 119.99765 * 240.06090 * 12 11 10 15 15 H 1.08004 * 119.99947 * 22.90792 * 14 12 11 16 16 C 1.38809 * 119.99825 * 202.91365 * 14 12 11 17 17 N 1.31611 * 120.00279 * 10.69336 * 16 14 12 18 18 Si 1.86802 * 119.99882 * 190.69893 * 16 14 12 19 19 H 1.48505 * 109.47218 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47289 * 119.99731 * 18 16 14 21 21 H 1.48505 * 109.47156 * 239.99997 * 18 16 14 22 22 C 1.53042 * 109.53400 * 298.50917 * 11 10 9 23 23 C 1.46921 * 120.63144 * 185.78084 * 8 6 5 24 24 C 1.39923 * 118.12323 * 0.02562 * 5 4 3 25 25 C 1.50701 * 120.53953 * 180.02562 * 24 5 4 26 26 C 1.53003 * 117.49910 * 181.84564 * 25 24 5 27 27 C 1.52998 * 59.99971 * 252.51071 * 26 25 24 28 28 N 1.31851 * 118.95409 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47325 * 90.00156 * 1 2 3 30 30 H 1.09009 * 109.47156 * 209.99690 * 1 2 3 31 31 H 1.08994 * 109.47404 * 329.99651 * 1 2 3 32 32 H 1.07999 * 120.53754 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.58469 * 246.19417 * 9 8 6 34 34 H 1.08993 * 109.59423 * 6.62479 * 9 8 6 35 35 H 1.08991 * 109.63218 * 294.85798 * 10 9 8 36 36 H 1.09004 * 109.42627 * 174.72170 * 10 9 8 37 37 H 1.08997 * 109.45847 * 58.52588 * 11 10 9 38 38 H 1.09009 * 109.47041 * 94.10436 * 13 12 11 39 39 H 1.09002 * 109.47981 * 214.10416 * 13 12 11 40 40 H 1.08996 * 109.47587 * 334.10803 * 13 12 11 41 41 H 0.97003 * 120.00486 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.49801 * 301.41545 * 22 11 10 43 43 H 1.09000 * 109.51896 * 181.33002 * 22 11 10 44 44 H 1.08996 * 109.58987 * 353.37537 * 23 8 6 45 45 H 1.09001 * 109.58499 * 113.66066 * 23 8 6 46 46 H 1.08995 * 115.55162 * 327.55240 * 25 24 5 47 47 H 1.09002 * 117.49842 * 0.02562 * 26 25 24 48 48 H 1.09005 * 117.49694 * 145.01489 * 26 25 24 49 49 H 1.09003 * 117.49447 * 252.50943 * 27 26 25 50 50 H 1.09001 * 117.52085 * 107.48546 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2006 0.0005 5 6 4.1855 0.0001 0.0016 6 6 5.6638 0.0001 0.0028 7 8 6.2722 -0.6934 -0.7888 8 7 6.3370 0.7690 0.8814 9 6 5.6206 1.5194 1.9218 10 6 6.2299 1.1651 3.2868 11 6 7.7374 1.4263 3.2494 12 7 8.3176 1.1238 4.5601 13 6 8.2069 -0.2269 5.1162 14 6 8.9633 2.1039 5.2657 15 1 8.7446 3.1433 5.0701 16 6 9.8990 1.7613 6.2320 17 7 10.3214 0.5185 6.3279 18 14 10.5587 3.0644 7.3967 19 1 9.9296 4.3726 7.0834 20 1 10.2403 2.6842 8.7964 21 1 12.0310 3.1725 7.2358 22 6 8.3850 0.5348 2.1872 23 6 7.8006 0.8776 0.8132 24 6 3.4661 -1.2001 0.0015 25 6 4.1857 -2.5242 0.0033 26 6 3.3313 -3.7927 -0.0406 27 6 4.0514 -3.3996 1.2509 28 7 2.1452 -1.1537 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.9815 2.1495 0.0001 33 1 5.7251 2.5888 1.7384 34 1 4.5656 1.2457 1.9088 35 1 6.0483 0.1132 3.5070 36 1 5.7726 1.7832 4.0594 37 1 7.9186 2.4729 3.0047 38 1 9.1001 -0.7983 4.8632 39 1 8.1089 -0.1669 6.2001 40 1 7.3294 -0.7209 4.6989 41 1 10.9750 0.2791 7.0034 42 1 8.1830 -0.5112 2.4178 43 1 9.4618 0.7039 2.1770 44 1 8.1845 0.1803 0.0686 45 1 8.0792 1.8951 0.5388 46 1 5.1400 -2.5413 -0.5232 47 1 2.2487 -3.6695 -0.0711 48 1 3.7234 -4.6446 -0.5963 49 1 4.9172 -3.9930 1.5449 50 1 3.4429 -3.0177 2.0706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985774598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:33 Heat of formation + Delta-G solvation = 67.766788 kcal Electronic energy + Delta-G solvation = -31040.861389 eV Core-core repulsion = 27069.983338 eV Total energy + Delta-G solvation = -3970.878051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.71761 -39.82105 -37.77500 -37.29710 -35.16676 -33.92887 -33.32279 -32.16089 -30.90077 -29.87580 -28.94617 -26.03978 -25.79420 -25.20861 -23.72129 -22.96653 -22.51350 -22.06388 -21.24227 -20.24035 -18.82532 -18.17246 -17.20656 -16.80987 -16.65325 -16.17016 -15.62036 -15.45696 -15.06254 -14.81629 -14.25380 -14.14748 -13.95267 -13.72609 -13.54548 -13.39141 -13.14079 -12.97079 -12.76579 -12.42619 -12.36633 -12.14198 -11.96543 -11.77619 -11.65250 -11.52165 -11.47685 -11.02167 -10.89183 -10.83578 -10.70126 -10.43757 -10.38094 -10.25278 -10.16866 -9.90233 -9.86849 -9.64326 -9.55479 -9.42823 -8.64065 -8.53873 -6.78222 -5.74570 -3.21524 0.29032 0.71707 2.51592 2.90644 3.26785 3.35068 3.42344 3.44017 3.49992 3.69775 3.76539 4.02953 4.26794 4.45293 4.61620 4.77472 4.78485 4.80719 4.92802 4.98257 5.16525 5.18039 5.19821 5.30848 5.33282 5.44486 5.50040 5.50686 5.53250 5.56570 5.69060 5.70577 5.81518 5.92848 5.95068 6.00963 6.07071 6.09410 6.18552 6.30172 6.46754 6.53176 6.63938 6.76182 6.92508 6.95638 7.34327 7.38243 7.71801 7.74979 7.78756 8.03446 8.37494 9.21488 9.84622 10.33878 11.30044 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.002764 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.180727 B =10128.616234 C =10483.691263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.333 3.667 3 N -0.524 5.524 4 C 0.188 3.812 5 C -0.234 4.234 6 C 0.573 3.427 7 O -0.534 6.534 8 N -0.595 5.595 9 C 0.105 3.895 10 C -0.146 4.146 11 C 0.180 3.820 12 N -0.596 5.596 13 C 0.165 3.835 14 C -0.255 4.255 15 H 0.068 0.932 16 C 0.002 3.998 17 N -0.907 5.907 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.290 1.290 22 C -0.144 4.144 23 C 0.114 3.886 24 C 0.262 3.738 25 C -0.136 4.136 26 C -0.153 4.153 27 C -0.152 4.152 28 N -0.519 5.519 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.042 0.958 40 H -0.004 1.004 41 H 0.252 0.748 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.144 0.856 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.138 -2.702 -13.315 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 N -0.239 5.239 4 C 0.021 3.979 5 C -0.241 4.241 6 C 0.359 3.641 7 O -0.412 6.412 8 N -0.327 5.327 9 C -0.018 4.018 10 C -0.186 4.186 11 C 0.071 3.929 12 N -0.317 5.317 13 C 0.021 3.979 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.552 5.552 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.217 1.217 22 C -0.185 4.185 23 C -0.008 4.008 24 C 0.116 3.884 25 C -0.155 4.155 26 C -0.190 4.190 27 C -0.190 4.190 28 N -0.233 5.233 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.161 0.839 47 H 0.126 0.874 48 H 0.118 0.882 49 H 0.123 0.877 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.683 -3.119 -13.569 22.506 hybrid contribution 1.482 0.797 0.791 1.860 sum -16.201 -2.321 -12.778 20.764 Atomic orbital electron populations 1.20618 0.85322 1.04469 1.04079 1.23447 0.98374 0.83224 0.88243 1.68306 1.09483 1.30033 1.16048 1.23485 0.89449 0.97598 0.87360 1.21474 0.96399 0.96179 1.10086 1.17747 0.85664 0.79668 0.80989 1.90741 1.69069 1.41227 1.40173 1.48100 1.08178 1.46012 1.30436 1.22067 0.95693 0.95937 0.88125 1.22554 0.99449 1.02217 0.94392 1.20272 0.89584 0.97007 0.86002 1.43948 1.64264 1.08763 1.14770 1.20735 0.95100 0.84912 0.97172 1.19264 1.15833 0.87930 1.15408 0.91381 1.25037 0.97251 0.96406 1.00940 1.70073 1.32900 1.16649 1.35613 0.86194 0.78502 0.81008 0.80879 1.20346 1.21684 1.21742 1.22506 1.01177 1.01397 0.93371 1.21779 0.77537 1.01934 0.99549 1.20823 0.88448 0.93462 0.85706 1.21296 1.01689 0.86822 1.05706 1.22962 0.99721 0.96128 1.00158 1.22981 1.03303 1.01465 0.91259 1.68060 1.08922 1.30137 1.16218 0.89341 0.89404 0.89286 0.80822 0.90823 0.90964 0.91901 0.90696 0.91828 0.95450 0.93892 0.98594 0.93815 0.92127 0.90428 0.89373 0.91319 0.83862 0.87359 0.88222 0.87662 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.31 36.00 0.37 -0.24 16 2 C 0.33 3.68 7.64 -157.07 -1.20 2.48 16 3 N -0.52 -6.05 10.32 -10.39 -0.11 -6.16 16 4 C 0.19 2.11 8.88 -16.77 -0.15 1.97 16 5 C -0.23 -3.02 4.82 -104.69 -0.50 -3.53 16 6 C 0.57 8.26 6.82 -12.33 -0.08 8.18 16 7 O -0.53 -9.03 14.50 5.32 0.08 -8.95 16 8 N -0.60 -8.12 2.97 -173.62 -0.51 -8.64 16 9 C 0.11 1.30 5.37 -3.48 -0.02 1.28 16 10 C -0.15 -2.30 5.34 -26.38 -0.14 -2.44 16 11 C 0.18 3.38 2.55 -67.89 -0.17 3.20 16 12 N -0.60 -14.21 2.81 -173.44 -0.49 -14.70 16 13 C 0.17 3.98 8.03 59.84 0.48 4.46 16 14 C -0.25 -6.74 9.60 -15.06 -0.14 -6.89 16 15 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 16 C 0.00 0.05 5.14 -17.43 -0.09 -0.04 16 17 N -0.91 -26.00 10.58 55.49 0.59 -25.42 16 18 Si 0.90 21.43 29.57 -169.99 -5.03 16.40 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 C -0.14 -2.50 5.34 -26.61 -0.14 -2.64 16 23 C 0.11 1.63 6.44 -3.71 -0.02 1.61 16 24 C 0.26 3.41 6.53 -81.82 -0.53 2.87 16 25 C -0.14 -1.67 5.45 -91.77 -0.50 -2.17 16 26 C -0.15 -1.50 10.04 -26.73 -0.27 -1.77 16 27 C -0.15 -1.62 10.23 -26.73 -0.27 -1.90 16 28 N -0.52 -6.30 9.34 -6.68 -0.06 -6.37 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.17 1.54 7.43 -52.49 -0.39 1.15 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.83 5.15 -51.93 -0.27 0.57 16 35 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.19 7.86 -51.93 -0.41 0.78 16 38 H 0.03 0.72 7.41 -51.92 -0.38 0.33 16 39 H 0.04 1.12 7.20 -51.93 -0.37 0.75 16 40 H 0.00 -0.09 6.46 -51.93 -0.34 -0.43 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.14 1.96 6.21 -51.93 -0.32 1.64 16 47 H 0.11 1.07 7.58 -51.93 -0.39 0.67 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -31.29 394.22 -10.75 -42.04 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.76 Total: 1.41 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -3.40 Total: 4.44 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.58 Total: -61.28 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.29 -10.75 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985774598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.802 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds