Wall clock time and date at job start Wed Apr 1 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31887 * 118.94933 * 2 1 4 4 C 1.32136 * 120.96606 * 179.97438 * 3 2 1 5 5 C 1.39967 * 118.92281 * 359.97438 * 4 3 2 6 6 C 1.47832 * 120.93907 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99879 * 228.81890 * 6 5 4 8 8 N 1.34779 * 120.00298 * 48.81537 * 6 5 4 9 9 C 1.46929 * 120.62249 * 5.50413 * 8 6 5 10 10 C 1.53631 * 108.53880 * 126.36963 * 9 8 6 11 11 C 1.53043 * 109.24434 * 54.85332 * 10 9 8 12 12 N 1.46496 * 109.44837 * 178.49940 * 11 10 9 13 13 C 1.46490 * 120.00384 * 60.05519 * 12 11 10 14 14 C 1.36941 * 119.99765 * 240.06090 * 12 11 10 15 15 H 1.08004 * 119.99947 * 22.90792 * 14 12 11 16 16 C 1.38809 * 119.99825 * 202.91365 * 14 12 11 17 17 N 1.31611 * 120.00279 * 10.69336 * 16 14 12 18 18 Si 1.86802 * 119.99882 * 190.69893 * 16 14 12 19 19 H 1.48505 * 109.47218 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47289 * 119.99731 * 18 16 14 21 21 H 1.48505 * 109.47156 * 239.99997 * 18 16 14 22 22 C 1.53042 * 109.53400 * 298.50917 * 11 10 9 23 23 C 1.46921 * 120.63144 * 185.78084 * 8 6 5 24 24 C 1.39923 * 118.12323 * 0.02562 * 5 4 3 25 25 C 1.50701 * 120.53953 * 180.02562 * 24 5 4 26 26 C 1.53003 * 117.49910 * 181.84564 * 25 24 5 27 27 C 1.52998 * 59.99971 * 252.51071 * 26 25 24 28 28 N 1.31851 * 118.95409 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47325 * 90.00156 * 1 2 3 30 30 H 1.09009 * 109.47156 * 209.99690 * 1 2 3 31 31 H 1.08994 * 109.47404 * 329.99651 * 1 2 3 32 32 H 1.07999 * 120.53754 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.58469 * 246.19417 * 9 8 6 34 34 H 1.08993 * 109.59423 * 6.62479 * 9 8 6 35 35 H 1.08991 * 109.63218 * 294.85798 * 10 9 8 36 36 H 1.09004 * 109.42627 * 174.72170 * 10 9 8 37 37 H 1.08997 * 109.45847 * 58.52588 * 11 10 9 38 38 H 1.09009 * 109.47041 * 94.10436 * 13 12 11 39 39 H 1.09002 * 109.47981 * 214.10416 * 13 12 11 40 40 H 1.08996 * 109.47587 * 334.10803 * 13 12 11 41 41 H 0.97003 * 120.00486 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.49801 * 301.41545 * 22 11 10 43 43 H 1.09000 * 109.51896 * 181.33002 * 22 11 10 44 44 H 1.08996 * 109.58987 * 353.37537 * 23 8 6 45 45 H 1.09001 * 109.58499 * 113.66066 * 23 8 6 46 46 H 1.08995 * 115.55162 * 327.55240 * 25 24 5 47 47 H 1.09002 * 117.49842 * 0.02562 * 26 25 24 48 48 H 1.09005 * 117.49694 * 145.01489 * 26 25 24 49 49 H 1.09003 * 117.49447 * 252.50943 * 27 26 25 50 50 H 1.09001 * 117.52085 * 107.48546 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2006 0.0005 5 6 4.1855 0.0001 0.0016 6 6 5.6638 0.0001 0.0028 7 8 6.2722 -0.6934 -0.7888 8 7 6.3370 0.7690 0.8814 9 6 5.6206 1.5194 1.9218 10 6 6.2299 1.1651 3.2868 11 6 7.7374 1.4263 3.2494 12 7 8.3176 1.1238 4.5601 13 6 8.2069 -0.2269 5.1162 14 6 8.9633 2.1039 5.2657 15 1 8.7446 3.1433 5.0701 16 6 9.8990 1.7613 6.2320 17 7 10.3214 0.5185 6.3279 18 14 10.5587 3.0644 7.3967 19 1 9.9296 4.3726 7.0834 20 1 10.2403 2.6842 8.7964 21 1 12.0310 3.1725 7.2358 22 6 8.3850 0.5348 2.1872 23 6 7.8006 0.8776 0.8132 24 6 3.4661 -1.2001 0.0015 25 6 4.1857 -2.5242 0.0033 26 6 3.3313 -3.7927 -0.0406 27 6 4.0514 -3.3996 1.2509 28 7 2.1452 -1.1537 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.9815 2.1495 0.0001 33 1 5.7251 2.5888 1.7384 34 1 4.5656 1.2457 1.9088 35 1 6.0483 0.1132 3.5070 36 1 5.7726 1.7832 4.0594 37 1 7.9186 2.4729 3.0047 38 1 9.1001 -0.7983 4.8632 39 1 8.1089 -0.1669 6.2001 40 1 7.3294 -0.7209 4.6989 41 1 10.9750 0.2791 7.0034 42 1 8.1830 -0.5112 2.4178 43 1 9.4618 0.7039 2.1770 44 1 8.1845 0.1803 0.0686 45 1 8.0792 1.8951 0.5388 46 1 5.1400 -2.5413 -0.5232 47 1 2.2487 -3.6695 -0.0711 48 1 3.7234 -4.6446 -0.5963 49 1 4.9172 -3.9930 1.5449 50 1 3.4429 -3.0177 2.0706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985774598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:32 Heat of formation + Delta-G solvation = 50.625856 kcal Electronic energy + Delta-G solvation = -31041.604676 eV Core-core repulsion = 27069.983338 eV Total energy + Delta-G solvation = -3971.621338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.62957 -40.95154 -39.04005 -38.29973 -36.75026 -34.88156 -34.23973 -33.76129 -32.10049 -31.50685 -29.81664 -28.04420 -26.77249 -26.48208 -24.83029 -24.21796 -23.61648 -23.26100 -22.16088 -21.51743 -20.14315 -19.10396 -18.75819 -18.29901 -17.52337 -17.31700 -16.94846 -16.47011 -16.37723 -15.88861 -15.69450 -15.31971 -15.12675 -15.08711 -14.89182 -14.56136 -14.44962 -14.02357 -13.84714 -13.56023 -13.32498 -13.27602 -13.12269 -13.00214 -12.84073 -12.76121 -12.67308 -12.52362 -12.37209 -12.35397 -12.21658 -12.03162 -11.83943 -11.65817 -11.56857 -11.27929 -11.21732 -10.95700 -10.63185 -10.43725 -10.35100 -9.75770 -8.76272 -7.80404 -5.28992 -0.60522 -0.16527 1.42714 1.47025 1.48677 1.58364 1.83270 2.39465 2.51602 2.68427 2.88429 2.91856 3.18592 3.25992 3.33728 3.60578 3.72289 3.81068 3.90503 3.92128 4.01936 4.07895 4.12320 4.15710 4.29223 4.35610 4.50829 4.51885 4.65370 4.68298 4.71208 4.72786 4.81034 4.81864 4.85487 4.89842 4.92911 4.97195 5.05623 5.07649 5.21646 5.23448 5.31794 5.34343 5.47078 5.55870 5.67099 5.72040 5.75039 6.23523 6.35273 6.88796 6.92708 7.17117 7.89664 8.34511 9.23092 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.002764 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.180727 B =10128.616234 C =10483.691263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.328 3.672 3 N -0.531 5.531 4 C 0.196 3.804 5 C -0.252 4.252 6 C 0.577 3.423 7 O -0.564 6.564 8 N -0.594 5.594 9 C 0.114 3.886 10 C -0.135 4.135 11 C 0.175 3.825 12 N -0.611 5.611 13 C 0.186 3.814 14 C -0.257 4.257 15 H 0.077 0.923 16 C -0.056 4.056 17 N -0.942 5.942 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.295 1.295 21 H -0.295 1.295 22 C -0.132 4.132 23 C 0.125 3.875 24 C 0.252 3.748 25 C -0.156 4.156 26 C -0.134 4.134 27 C -0.151 4.151 28 N -0.527 5.527 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.200 0.800 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.070 0.930 38 H -0.003 1.003 39 H 0.014 0.986 40 H 0.021 0.979 41 H 0.245 0.755 42 H 0.039 0.961 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.109 0.891 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.467 -1.030 -14.284 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 N -0.246 5.246 4 C 0.029 3.971 5 C -0.260 4.260 6 C 0.365 3.635 7 O -0.444 6.444 8 N -0.325 5.325 9 C -0.009 4.009 10 C -0.175 4.175 11 C 0.068 3.932 12 N -0.333 5.333 13 C 0.040 3.960 14 C -0.387 4.387 15 H 0.095 0.905 16 C -0.251 4.251 17 N -0.589 5.589 18 Si 0.796 3.204 19 H -0.187 1.187 20 H -0.222 1.222 21 H -0.223 1.223 22 C -0.172 4.172 23 C 0.002 3.998 24 C 0.106 3.894 25 C -0.175 4.175 26 C -0.171 4.171 27 C -0.189 4.189 28 N -0.242 5.242 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.216 0.784 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.015 0.985 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.142 0.858 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.057 -1.421 -14.563 24.827 hybrid contribution 2.134 0.253 1.037 2.386 sum -17.923 -1.168 -13.526 22.485 Atomic orbital electron populations 1.20778 0.82676 1.05509 1.05317 1.24238 0.99994 0.82844 0.86693 1.68433 1.09460 1.30131 1.16530 1.23872 0.89484 0.97877 0.85904 1.21378 0.95340 0.97034 1.12227 1.17939 0.86301 0.78841 0.80468 1.90727 1.69880 1.42344 1.41479 1.48106 1.07804 1.46030 1.30604 1.22109 0.95859 0.97408 0.85480 1.22361 0.97059 1.01268 0.96783 1.20517 0.91244 0.97523 0.83915 1.44184 1.64363 1.08006 1.16762 1.20370 0.94712 0.85386 0.95483 1.19651 1.15033 0.88830 1.15172 0.90543 1.25800 0.98197 0.98192 1.02901 1.70248 1.33825 1.18514 1.36329 0.85195 0.77396 0.79368 0.78441 1.18651 1.22247 1.22276 1.22289 1.00080 0.99824 0.95054 1.21621 0.78000 1.03133 0.97018 1.20982 0.89045 0.93733 0.85647 1.21233 1.01614 0.87802 1.06822 1.23028 0.99570 0.95264 0.99215 1.23001 1.03607 1.01103 0.91161 1.68139 1.08404 1.30743 1.16914 0.87799 0.88485 0.88095 0.78357 0.87735 0.89504 0.93514 0.90544 0.91177 0.98488 0.96731 0.96096 0.94526 0.94170 0.92420 0.89956 0.88826 0.85784 0.87090 0.86641 0.87260 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.31 71.23 0.73 -0.23 16 2 C 0.33 6.48 7.64 138.70 1.06 7.54 16 3 N -0.53 -10.83 10.32 -186.80 -1.93 -12.76 16 4 C 0.20 3.89 8.88 85.07 0.76 4.64 16 5 C -0.25 -6.15 4.82 -19.91 -0.10 -6.25 16 6 C 0.58 16.03 6.82 86.78 0.59 16.62 16 7 O -0.56 -19.06 14.50 -3.89 -0.06 -19.12 16 8 N -0.59 -15.12 2.97 -821.48 -2.44 -17.55 16 9 C 0.11 2.49 5.37 86.51 0.46 2.95 16 10 C -0.13 -4.01 5.34 30.82 0.16 -3.85 16 11 C 0.17 6.39 2.55 45.02 0.11 6.51 16 12 N -0.61 -29.30 2.81 -702.65 -1.98 -31.27 16 13 C 0.19 9.21 8.03 127.77 1.03 10.24 16 14 C -0.26 -13.55 9.60 84.03 0.81 -12.74 16 15 H 0.08 3.84 7.81 -2.91 -0.02 3.82 16 16 C -0.06 -3.10 5.14 84.86 0.44 -2.67 16 17 N -0.94 -55.63 10.58 21.65 0.23 -55.40 16 18 Si 0.97 44.36 29.57 68.60 2.03 46.39 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 21 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 22 C -0.13 -4.58 5.34 30.67 0.16 -4.42 16 23 C 0.12 3.40 6.44 86.36 0.56 3.96 16 24 C 0.25 6.32 6.53 42.92 0.28 6.60 16 25 C -0.16 -3.77 5.45 -11.54 -0.06 -3.84 16 26 C -0.13 -2.50 10.04 30.59 0.31 -2.19 16 27 C -0.15 -3.15 10.23 30.59 0.31 -2.83 16 28 N -0.53 -11.97 9.34 -175.03 -1.63 -13.60 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.20 2.78 7.43 -2.91 -0.02 2.75 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.72 5.15 -2.39 -0.01 1.71 16 35 H 0.05 1.54 6.72 -2.39 -0.02 1.52 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.48 7.86 -2.39 -0.02 2.46 16 38 H 0.00 -0.18 7.41 -2.38 -0.02 -0.19 16 39 H 0.01 0.77 7.20 -2.39 -0.02 0.75 16 40 H 0.02 0.90 6.46 -2.39 -0.02 0.89 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.04 1.53 7.72 -2.39 -0.02 1.52 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.12 3.50 6.21 -2.39 -0.01 3.48 16 47 H 0.11 2.02 7.58 -2.39 -0.02 2.01 16 48 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 49 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -69.20 394.22 2.79 -66.41 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.95 Total: 16.87 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 7.61 Total: 20.04 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -7.74 Total: -130.59 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.06 Total: -19.12 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.20 2.79 -66.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985774598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.041 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds